RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 C6orf99Q4VX62 202 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 S100A7L2Q5SY68 101 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 LYPD5Q6UWN5 251 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 C2orf82Q6UX34 121 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 ZNF826PQ6ZT77 177 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 VMO1Q7Z5L0 202 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 MDP1Q86V88 176 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 NPBQ8NG41 125 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 NPCDR1Q9BY65 106 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 PRO1854Q9UHT4 67 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 TMEM14AQ9Y6G1 99 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 TANC2Q9HCD6 1990 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 KIAA1549LQ6ZVL6 1849 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 LTBP4Q8N2S1 1624 aa1.09□□□□□ -2.23
NUP54-208ENST00000508604 MYO16Q9Y6X6 1858 aa1.09□□□□□ -2.23
NUP54-208ENST00000508604 IGHV1-69DA0A0B4J2H0 117 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 TMEM30CPA0ZSE6 113 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 A6NN06 94 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 TMEM14DPA8MWL7 114 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 BUB1B-PAK6H3BSN5 160 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 SH2D1AO60880 128 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 IGLV2-23P01705 113 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 SAA1P0DJI8 122 aaPredicted RBP1.09□□□□□ -2.24
NUP54-208ENST00000508604 ZNF22P17026 224 aaPredicted RBP1.09□□□□□ -2.24
NUP54-208ENST00000508604 RNASE4P34096 147 aaKnown RBP1.09□□□□□ -2.24
NUP54-208ENST00000508604 FUSP35637 526 aaKnown RBP eCLIP1.09□□□□□ -2.24
NUP54-208ENST00000508604 LINC00173Q6ZV60 143 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 SCXQ7RTU7 201 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 LYZL2Q7Z4W2 148 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 LYPD6Q86Y78 171 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 GPHB5Q86YW7 130 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 FAM223AQ8IWN6 122 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 WFDC5Q8TCV5 224 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 ZCCHC13Q8WW36 166 aaKnown RBP1.09□□□□□ -2.24
NUP54-208ENST00000508604 Q96M85 177 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 CYP4F30PQ9H0H9 118 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 LINC00474Q9P2X8 69 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 TAC3Q9UHF0 121 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 UBE2D4Q9Y2X8 147 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 POLEQ07864 2286 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 CABIN1Q9Y6J0 2220 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 EML5Q05BV3 1969 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 ATG2BQ96BY7 2078 aa1.09□□□□□ -2.24
NUP54-208ENST00000508604 LTBP2Q14767 1821 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 MYO9BQ13459 2157 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 IGKV2D-26A0A0A0MRZ7 120 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 IGLV3-32A0A0A0MS00 114 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 IGHV1OR15-9A0A0B4J2B8 117 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 TMEM223A0PJW6 202 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 IGKV1D-33P01593 117 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 IGKV1-33P01594 117 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 IGHV3-33P01772 117 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 CD28P10747 220 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 MIFP14174 115 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 FCER1GP30273 86 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 RPS21P63220 83 aaKnown RBP1.08□□□□□ -2.24
NUP54-208ENST00000508604 GDF5OSQ5U4N7 250 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 SPANXN1Q5VSR9 72 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 ZNF818PQ6ZRF7 136 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 C20orf197Q8N268 126 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 FAM216BQ8N7L0 139 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 CCL4L1Q8NHW4 92 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 SMCR5Q8TEV8 140 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 ITLN2Q8WWU7 325 aaPredicted RBP1.08□□□□□ -2.24
NUP54-208ENST00000508604 NABP2Q9BQ15 211 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 WFDC6Q9BQY6 131 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 TMEM167BQ9NRX6 74 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 PHLDA3Q9Y5J5 127 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 COL4A6Q14031 1691 aa1.08□□□□□ -2.24
NUP54-208ENST00000508604 TRAV12-1A0A0B4J245 112 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 FAM223BA6NKX1 122 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 HIGD1CA8MV81 97 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 F8WEM9 126 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 C3orf84H3BNL1 204 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 GNRH2O43555 120 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 SPINK4O60575 86 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 IL9P15248 144 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 FGF12P61328 243 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 SYCNQ0VAF6 134 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 PATE2Q6UY27 113 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 PRNTQ86SH4 94 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 DYNAPQ8N1N2 210 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 LINC00269Q8N2A0 174 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 CLEC2BQ92478 149 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 TMEM141Q96I45 108 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 FAM167A-AS1Q96KT0 104 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 LINC00597Q9H2U6 94 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 PSENENQ9NZ42 101 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 U3KQK5 164 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 MYO7AQ13402 2215 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 MYOFQ9NZM1 2061 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 ZNF831Q5JPB2 1677 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 IGHV1-45A0A0A0MS14 117 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 CPSF4LA6NMK7 179 aaKnown RBP1.07□□□□□ -2.24
NUP54-208ENST00000508604 LOC730098B7Z3J9 87 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 F8VRH5 84 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 K7EMI3 77 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 HMGN4O00479 90 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 IGLV2-8P01709 118 aa1.07□□□□□ -2.24
NUP54-208ENST00000508604 IGHV3-30P01768 117 aa1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms