RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 DEFB114Q30KQ6 69 aa7.18□□□□□ -1.26
CLIP1-204ENST00000501271 C11orf72Q8NBR9 251 aa7.18□□□□□ -1.26
CLIP1-204ENST00000501271 PRO0461Q9UI25 63 aa7.18□□□□□ -1.26
CLIP1-204ENST00000501271 A8MWV9 139 aa7.17□□□□□ -1.26
CLIP1-204ENST00000501271 CEMP1Q6PRD7 247 aaPredicted RBP7.17□□□□□ -1.26
CLIP1-204ENST00000501271 Q6ZSV7 163 aa7.17□□□□□ -1.26
CLIP1-204ENST00000501271 VCX2Q9H322 139 aa7.17□□□□□ -1.26
CLIP1-204ENST00000501271 LEPROTO15243 131 aa7.17□□□□□ -1.26
CLIP1-204ENST00000501271 CFAP126Q5VTH2 177 aa7.17□□□□□ -1.26
CLIP1-204ENST00000501271 SFTA2Q6UW10 78 aa7.17□□□□□ -1.26
CLIP1-204ENST00000501271 TNFRSF18Q9Y5U5 241 aa7.17□□□□□ -1.26
CLIP1-204ENST00000501271 NDUFA11Q86Y39 141 aa7.16□□□□□ -1.26
CLIP1-204ENST00000501271 LINC01587Q99440 93 aa7.16□□□□□ -1.26
CLIP1-204ENST00000501271 PYGO1Q9Y3Y4 419 aa7.16□□□□□ -1.26
CLIP1-204ENST00000501271 FLNAP21333 2647 aaKnown RBP7.16□□□□□ -1.26
CLIP1-204ENST00000501271 GAGE13Q4V321 117 aa7.16□□□□□ -1.26
CLIP1-204ENST00000501271 RNASE13Q5GAN3 156 aaKnown RBP7.16□□□□□ -1.26
CLIP1-204ENST00000501271 PIK3CD-AS1Q5SR53 167 aa7.16□□□□□ -1.26
CLIP1-204ENST00000501271 SH2D6Q7Z4S9 175 aa7.16□□□□□ -1.26
CLIP1-204ENST00000501271 RAX2Q96IS3 184 aa7.16□□□□□ -1.26
CLIP1-204ENST00000501271 DNAJC9-AS1A6NH13 148 aa7.15□□□□□ -1.26
CLIP1-204ENST00000501271 INSP01308 110 aa7.15□□□□□ -1.26
CLIP1-204ENST00000501271 CFC1BP0CG36 223 aa7.15□□□□□ -1.26
CLIP1-204ENST00000501271 CFC1P0CG37 223 aa7.15□□□□□ -1.26
CLIP1-204ENST00000501271 ODF3L2Q3SX64 289 aa7.15□□□□□ -1.26
CLIP1-204ENST00000501271 ETDBQ3ZM63 59 aa7.15□□□□□ -1.26
CLIP1-204ENST00000501271 C11orf44Q8N8P7 122 aa7.15□□□□□ -1.26
CLIP1-204ENST00000501271 WFDC11Q8NEX6 87 aa7.15□□□□□ -1.26
CLIP1-204ENST00000501271 CHCHD7Q9BUK0 85 aa7.15□□□□□ -1.26
CLIP1-204ENST00000501271 PTH2Q96A98 100 aa7.15□□□□□ -1.27
CLIP1-204ENST00000501271 LINC00467Q9BRT7 94 aa7.15□□□□□ -1.27
CLIP1-204ENST00000501271 NIPBLQ6KC79 2804 aaeCLIP7.14□□□□□ -1.27
CLIP1-204ENST00000501271 LOC107984156A0A0G2JMH3 177 aa7.14□□□□□ -1.27
CLIP1-204ENST00000501271 A0A1W2PRX2 142 aa7.14□□□□□ -1.27
CLIP1-204ENST00000501271 UBE2D3P61077 147 aa7.14□□□□□ -1.27
CLIP1-204ENST00000501271 UBE2D2P62837 147 aa7.14□□□□□ -1.27
CLIP1-204ENST00000501271 MRPS36P82909 103 aaKnown RBP7.14□□□□□ -1.27
CLIP1-204ENST00000501271 ARL17AQ8IVW1 177 aa7.14□□□□□ -1.27
CLIP1-204ENST00000501271 C10orf126Q8N4M7 172 aa7.14□□□□□ -1.27
CLIP1-204ENST00000501271 TMEM86BQ8N661 226 aa7.14□□□□□ -1.27
CLIP1-204ENST00000501271 XCL2Q9UBD3 114 aa7.14□□□□□ -1.27
CLIP1-204ENST00000501271 TENM4Q6N022 2769 aa7.14□□□□□ -1.27
CLIP1-204ENST00000501271 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.13□□□□□ -1.27
CLIP1-204ENST00000501271 IGHV3-38A0A0C4DH36 116 aa7.13□□□□□ -1.27
CLIP1-204ENST00000501271 IGKV2-29A2NJV5 120 aaPredicted RBP7.13□□□□□ -1.27
CLIP1-204ENST00000501271 AZU1P20160 251 aa7.13□□□□□ -1.27
CLIP1-204ENST00000501271 BEAN1Q3B7T3 259 aa7.13□□□□□ -1.27
CLIP1-204ENST00000501271 SPXQ9BT56 116 aa7.13□□□□□ -1.27
CLIP1-204ENST00000501271 ESM1Q9NQ30 184 aa7.13□□□□□ -1.27
CLIP1-204ENST00000501271 UBE2D4Q9Y2X8 147 aa7.13□□□□□ -1.27
CLIP1-204ENST00000501271 CCDC168Q8NDH2 2452 aa7.13□□□□□ -1.27
CLIP1-204ENST00000501271 TRAV8-3A0A0A6YYJ7 113 aa7.13□□□□□ -1.27
CLIP1-204ENST00000501271 EIF4EBP3O60516 100 aaPredicted RBP7.13□□□□□ -1.27
CLIP1-204ENST00000501271 IGHV3-53P01767 116 aa7.13□□□□□ -1.27
CLIP1-204ENST00000501271 IGHV3-30-3P0DP02 117 aa7.13□□□□□ -1.27
CLIP1-204ENST00000501271 ADARB2-AS1A8MUL3 147 aa7.12□□□□□ -1.27
CLIP1-204ENST00000501271 PSMB2P49721 201 aa7.12□□□□□ -1.27
CLIP1-204ENST00000501271 SMCPP49901 116 aaPredicted RBP7.12□□□□□ -1.27
CLIP1-204ENST00000501271 FHL3Q13643 280 aa7.12□□□□□ -1.27
CLIP1-204ENST00000501271 COTL1Q14019 142 aa7.12□□□□□ -1.27
CLIP1-204ENST00000501271 A4D1N5 150 aa7.12□□□□□ -1.27
CLIP1-204ENST00000501271 RS1O15537 224 aa7.12□□□□□ -1.27
CLIP1-204ENST00000501271 CRYBA4P53673 196 aa7.12□□□□□ -1.27
CLIP1-204ENST00000501271 Q6ZUT4 128 aa7.12□□□□□ -1.27
CLIP1-204ENST00000501271 TIMM21Q9BVV7 248 aa7.12□□□□□ -1.27
CLIP1-204ENST00000501271 SETXQ7Z333 2677 aaKnown RBP7.11□□□□□ -1.27
CLIP1-204ENST00000501271 IGHV3OR16-12A0A075B7B8 117 aa7.11□□□□□ -1.27
CLIP1-204ENST00000501271 A0A0J9YXY3 114 aa7.11□□□□□ -1.27
CLIP1-204ENST00000501271 INSL3P51460 131 aa7.11□□□□□ -1.27
CLIP1-204ENST00000501271 HIST2H2BCQ6DN03 193 aa7.11□□□□□ -1.27
CLIP1-204ENST00000501271 C1orf158Q8N1D5 194 aa7.11□□□□□ -1.27
CLIP1-204ENST00000501271 SPANXA1Q9NS26 97 aa7.11□□□□□ -1.27
CLIP1-204ENST00000501271 SETD2Q9BYW2 2564 aaPredicted RBP7.11□□□□□ -1.27
CLIP1-204ENST00000501271 MUSTN1Q8IVN3 82 aa7.11□□□□□ -1.27
CLIP1-204ENST00000501271 STHQ8IWL8 128 aa7.11□□□□□ -1.27
CLIP1-204ENST00000501271 PRO1854Q9UHT4 67 aa7.11□□□□□ -1.27
CLIP1-204ENST00000501271 ANK3Q12955 4377 aaKnown RBP7.1□□□□□ -1.27
CLIP1-204ENST00000501271 CCL24O00175 119 aa7.1□□□□□ -1.27
CLIP1-204ENST00000501271 TCL1BO95988 128 aa7.1□□□□□ -1.27
CLIP1-204ENST00000501271 IL17DQ8TAD2 202 aa7.1□□□□□ -1.27
CLIP1-204ENST00000501271 DNAJC30Q96LL9 226 aa7.1□□□□□ -1.27
CLIP1-204ENST00000501271 TRAV25A0A0B4J276 109 aa7.1□□□□□ -1.27
CLIP1-204ENST00000501271 IGHV1-58A0A0C4DH39 117 aa7.1□□□□□ -1.27
CLIP1-204ENST00000501271 TINCRA0A1B0GVN0 87 aa7.1□□□□□ -1.27
CLIP1-204ENST00000501271 A8MZ25 164 aa7.1□□□□□ -1.27
CLIP1-204ENST00000501271 TMEM238C9JI98 176 aa7.1□□□□□ -1.27
CLIP1-204ENST00000501271 TMEM263Q8WUH6 116 aaKnown RBP7.1□□□□□ -1.27
CLIP1-204ENST00000501271 LITAFQ99732 161 aa7.1□□□□□ -1.27
CLIP1-204ENST00000501271 TSSC4Q9Y5U2 329 aaPredicted RBP7.1□□□□□ -1.27
CLIP1-204ENST00000501271 PDZD2O15018 2839 aa7.1□□□□□ -1.27
CLIP1-204ENST00000501271 SPINK8P0C7L1 97 aa7.09□□□□□ -1.27
CLIP1-204ENST00000501271 ZNF418Q8TF45 676 aaPredicted RBP7.09□□□□□ -1.27
CLIP1-204ENST00000501271 CITED2Q99967 270 aaPredicted RBP7.09□□□□□ -1.27
CLIP1-204ENST00000501271 JMJD1CQ15652 2540 aa7.09□□□□□ -1.27
CLIP1-204ENST00000501271 TRGV1A0A0A0MS02 117 aa7.09□□□□□ -1.27
CLIP1-204ENST00000501271 LYRM7Q5U5X0 104 aa7.09□□□□□ -1.27
CLIP1-204ENST00000501271 VSIG2Q96IQ7 327 aa7.09□□□□□ -1.27
CLIP1-204ENST00000501271 ACANP16112 2415 aa7.08□□□□□ -1.28
CLIP1-204ENST00000501271 A0A0B4J2C4 111 aa7.08□□□□□ -1.28
CLIP1-204ENST00000501271 J3QR89 54 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms