RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 RASL11AQ6T310 242 aa9.14□□□□□ -0.95
TRAF4-212ENST00000498540 REG3GQ6UW15 175 aa9.14□□□□□ -0.95
TRAF4-212ENST00000498540 G3V3Q6 166 aa9.13□□□□□ -0.95
TRAF4-212ENST00000498540 FER1L6-AS1Q8NA97 138 aa9.13□□□□□ -0.95
TRAF4-212ENST00000498540 GVQW2A0A096LPI5 108 aaPredicted RBP9.12□□□□□ -0.95
TRAF4-212ENST00000498540 PFDN1O60925 122 aa9.12□□□□□ -0.95
TRAF4-212ENST00000498540 SRSF9Q13242 221 aaKnown RBP eCLIP9.12□□□□□ -0.952e-6■■□□□ 13.7
TRAF4-212ENST00000498540 COTL1Q14019 142 aa9.12□□□□□ -0.95
TRAF4-212ENST00000498540 TMUB2Q71RG4 321 aa9.12□□□□□ -0.95
TRAF4-212ENST00000498540 SFT2D1Q8WV19 159 aa9.12□□□□□ -0.95
TRAF4-212ENST00000498540 CHCHD10Q8WYQ3 142 aaPredicted RBP9.12□□□□□ -0.95
TRAF4-212ENST00000498540 NIT2Q9NQR4 276 aa9.12□□□□□ -0.95
TRAF4-212ENST00000498540 RPL35P42766 123 aaKnown RBP9.11□□□□□ -0.95
TRAF4-212ENST00000498540 FAM213BQ8TBF2 198 aa9.11□□□□□ -0.95
TRAF4-212ENST00000498540 ARPC5O15511 151 aa9.1□□□□□ -0.95
TRAF4-212ENST00000498540 CACNG7P62955 275 aa9.1□□□□□ -0.95
TRAF4-212ENST00000498540 OR2D3Q8NGH3 330 aa9.1□□□□□ -0.95
TRAF4-212ENST00000498540 MBD3L1Q8WWY6 194 aa9.1□□□□□ -0.95
TRAF4-212ENST00000498540 LPAP08519 4548 aa9.09□□□□□ -0.95
TRAF4-212ENST00000498540 FOXI1Q12951 378 aa9.08□□□□□ -0.96
TRAF4-212ENST00000498540 CENPWQ5EE01 88 aa9.08□□□□□ -0.96
TRAF4-212ENST00000498540 Q6ZRP5 223 aa9.08□□□□□ -0.96
TRAF4-212ENST00000498540 KCNRGQ8N5I3 272 aa9.08□□□□□ -0.96
TRAF4-212ENST00000498540 LINC00526Q96FQ7 95 aa9.08□□□□□ -0.96
TRAF4-212ENST00000498540 LINC00474Q9P2X8 69 aa9.08□□□□□ -0.96
TRAF4-212ENST00000498540 C19orf71A6NCJ1 209 aa9.07□□□□□ -0.96
TRAF4-212ENST00000498540 TRGC1P0CF51 173 aa9.07□□□□□ -0.96
TRAF4-212ENST00000498540 RPS20P60866 119 aaKnown RBP9.07□□□□□ -0.96
TRAF4-212ENST00000498540 AMMECR1LQ6DCA0 310 aa9.07□□□□□ -0.96
TRAF4-212ENST00000498540 LYZL1Q6UWQ5 148 aa9.07□□□□□ -0.96
TRAF4-212ENST00000498540 Q6ZNX1 250 aa9.07□□□□□ -0.96
TRAF4-212ENST00000498540 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.06□□□□□ -0.96
TRAF4-212ENST00000498540 IGKV2-29A2NJV5 120 aaPredicted RBP9.06□□□□□ -0.96
TRAF4-212ENST00000498540 NTF3P20783 257 aa9.06□□□□□ -0.96
TRAF4-212ENST00000498540 RNASEKQ6P5S7 137 aaKnown RBP9.06□□□□□ -0.96
TRAF4-212ENST00000498540 C11orf52Q96A22 123 aa9.06□□□□□ -0.96
TRAF4-212ENST00000498540 TRAV26-2A0A0B4J265 109 aa9.05□□□□□ -0.96
TRAF4-212ENST00000498540 F2Z2F3 143 aa9.05□□□□□ -0.96
TRAF4-212ENST00000498540 GATD1Q8NB37 220 aa9.05□□□□□ -0.96
TRAF4-212ENST00000498540 CARD19Q96LW7 228 aa9.05□□□□□ -0.96
TRAF4-212ENST00000498540 UMAD1C9J7I0 102 aa9.04□□□□□ -0.96
TRAF4-212ENST00000498540 H2AFB1P0C5Y9 115 aa9.04□□□□□ -0.96
TRAF4-212ENST00000498540 FGF6P10767 208 aa9.04□□□□□ -0.96
TRAF4-212ENST00000498540 XCL1P47992 114 aa9.04□□□□□ -0.96
TRAF4-212ENST00000498540 RAB19A4D1S5 217 aa9.03□□□□□ -0.96
TRAF4-212ENST00000498540 SMLR1H3BR10 107 aa9.03□□□□□ -0.96
TRAF4-212ENST00000498540 IFNA1P01562 189 aa9.03□□□□□ -0.96
TRAF4-212ENST00000498540 CTRLP40313 264 aa9.03□□□□□ -0.96
TRAF4-212ENST00000498540 RPL39LQ96EH5 51 aaKnown RBP9.03□□□□□ -0.96
TRAF4-212ENST00000498540 PKIGQ9Y2B9 76 aa9.03□□□□□ -0.96
TRAF4-212ENST00000498540 IGHV1-58A0A0C4DH39 117 aa9.02□□□□□ -0.97
TRAF4-212ENST00000498540 XKRY2A2RUG3 117 aa9.02□□□□□ -0.97
TRAF4-212ENST00000498540 CCL25O15444 150 aa9.02□□□□□ -0.97
TRAF4-212ENST00000498540 APCSP02743 223 aa9.02□□□□□ -0.97
TRAF4-212ENST00000498540 CCL20P78556 96 aa9.02□□□□□ -0.97
TRAF4-212ENST00000498540 C9orf62Q8N4C0 152 aa9.02□□□□□ -0.97
TRAF4-212ENST00000498540 OR5A1Q8NGJ0 315 aa9.02□□□□□ -0.97
TRAF4-212ENST00000498540 GNG13Q9P2W3 67 aa9.02□□□□□ -0.97
TRAF4-212ENST00000498540 TRBV20OR9-2A0A075B6H5 130 aa9.01□□□□□ -0.97
TRAF4-212ENST00000498540 H7C423 109 aa9.01□□□□□ -0.97
TRAF4-212ENST00000498540 NCR2O95944 276 aa9.01□□□□□ -0.97
TRAF4-212ENST00000498540 GNG4P50150 75 aa9.01□□□□□ -0.97
TRAF4-212ENST00000498540 PTTG1IPP53801 180 aa9.01□□□□□ -0.97
TRAF4-212ENST00000498540 TWIST1Q15672 202 aa9.01□□□□□ -0.97
TRAF4-212ENST00000498540 MANBALQ9NQG1 85 aa9.01□□□□□ -0.97
TRAF4-212ENST00000498540 LINC00959A0A1B0GUT2 108 aa9□□□□□ -0.97
TRAF4-212ENST00000498540 FAM231BA6NCW3 169 aa9□□□□□ -0.97
TRAF4-212ENST00000498540 SYCNQ0VAF6 134 aa9□□□□□ -0.97
TRAF4-212ENST00000498540 ZNF345Q14585 488 aa9□□□□□ -0.97
TRAF4-212ENST00000498540 SMIM12Q96EX1 92 aa9□□□□□ -0.97
TRAF4-212ENST00000498540 CNFNQ9BYD5 112 aa9□□□□□ -0.97
TRAF4-212ENST00000498540 A0A1W2PNN7 141 aa8.99□□□□□ -0.97
TRAF4-212ENST00000498540 ZNF25P17030 456 aaPredicted RBP8.99□□□□□ -0.97
TRAF4-212ENST00000498540 GAGE2BQ13066 116 aa8.99□□□□□ -0.97
TRAF4-212ENST00000498540 PSORS1C2Q9UIG4 136 aa8.99□□□□□ -0.97
TRAF4-212ENST00000498540 SDHAF1A6NFY7 115 aa8.98□□□□□ -0.97
TRAF4-212ENST00000498540 ZNF561-AS1K7EIQ3 104 aa8.98□□□□□ -0.97
TRAF4-212ENST00000498540 FOXA3P55318 350 aaPredicted RBP8.98□□□□□ -0.97
TRAF4-212ENST00000498540 LOC107984640A0A0U1RRK4 108 aa8.97□□□□□ -0.97
TRAF4-212ENST00000498540 BCL2P10415 239 aa8.97□□□□□ -0.97
TRAF4-212ENST00000498540 CAMPP49913 170 aa8.97□□□□□ -0.97
TRAF4-212ENST00000498540 NUDT10Q8NFP7 164 aa8.97□□□□□ -0.97
TRAF4-212ENST00000498540 NUDT11Q96G61 164 aa8.97□□□□□ -0.97
TRAF4-212ENST00000498540 BTF3L4Q96K17 158 aa8.97□□□□□ -0.97
TRAF4-212ENST00000498540 BCL2L11O43521 198 aa8.96□□□□□ -0.98
TRAF4-212ENST00000498540 MT-ND6P03923 174 aa8.96□□□□□ -0.98
TRAF4-212ENST00000498540 CD164L2Q6UWJ8 174 aa8.96□□□□□ -0.98
TRAF4-212ENST00000498540 ZNF664Q8N3J9 261 aa8.96□□□□□ -0.98
TRAF4-212ENST00000498540 TMEM101Q96IK0 257 aa8.96□□□□□ -0.98
TRAF4-212ENST00000498540 IGLV4-69A0A075B6H9 119 aa8.95□□□□□ -0.98
TRAF4-212ENST00000498540 TRAV1-1A0A0B4J248 108 aa8.95□□□□□ -0.98
TRAF4-212ENST00000498540 I3L3M4 83 aa8.95□□□□□ -0.98
TRAF4-212ENST00000498540 ESDP10768 282 aa8.95□□□□□ -0.98
TRAF4-212ENST00000498540 MEF2BQ02080 365 aaPredicted RBP8.95□□□□□ -0.98
TRAF4-212ENST00000498540 SS18Q15532 418 aa8.95□□□□□ -0.98
TRAF4-212ENST00000498540 C1orf137Q5JT78 98 aa8.95□□□□□ -0.98
TRAF4-212ENST00000498540 PRR26Q8N8Z3 221 aa8.95□□□□□ -0.98
TRAF4-212ENST00000498540 RPP21Q9H633 154 aaKnown RBP8.95□□□□□ -0.98
TRAF4-212ENST00000498540 BIN3Q9NQY0 253 aa8.95□□□□□ -0.98
TRAF4-212ENST00000498540 KANTRA0A1W2PQU2 76 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms