RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 TRAV12-1A0A0B4J245 112 aa6□□□□□ -1.45
SF3A1-210ENST00000498259 H0Y8G0 127 aa6□□□□□ -1.45
SF3A1-210ENST00000498259 UBE2L6O14933 153 aa6□□□□□ -1.45
SF3A1-210ENST00000498259 PAX4O43316 350 aa6□□□□□ -1.45
SF3A1-210ENST00000498259 TSHBP01222 138 aa6□□□□□ -1.45
SF3A1-210ENST00000498259 UBE2D3P61077 147 aa6□□□□□ -1.45
SF3A1-210ENST00000498259 PKIAP61925 76 aa6□□□□□ -1.45
SF3A1-210ENST00000498259 UBE2D2P62837 147 aa6□□□□□ -1.45
SF3A1-210ENST00000498259 LINC01545Q5VT33 79 aa6□□□□□ -1.45
SF3A1-210ENST00000498259 DGAT2L7PQ6IED9 249 aa6□□□□□ -1.45
SF3A1-210ENST00000498259 C20orf203Q8NBC4 194 aa6□□□□□ -1.45
SF3A1-210ENST00000498259 STAB1Q9NY15 2570 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 TRAV9-2A0A087WT02 112 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 TRAV26-1A0A087WT03 109 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 GAGE12JA6NER3 117 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 H3BNG1 76 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 GAGE1Q13065 139 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 GAGE4Q13068 117 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 GAGE5Q13069 117 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 GAGE13Q4V321 117 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 TEX43Q6ZNM6 134 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 Q6ZSN1 163 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 TMEM101Q96IK0 257 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 C2orf88Q9BSF0 95 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 TIMM21Q9BVV7 248 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 VCX2Q9H322 139 aa5.99□□□□□ -1.45
SF3A1-210ENST00000498259 A0A087WX48 190 aa5.98□□□□□ -1.45
SF3A1-210ENST00000498259 F5H768 121 aa5.98□□□□□ -1.45
SF3A1-210ENST00000498259 DPM2O94777 84 aa5.98□□□□□ -1.45
SF3A1-210ENST00000498259 P0DMU3 169 aa5.98□□□□□ -1.45
SF3A1-210ENST00000498259 FAM231AP0DMU4 169 aa5.98□□□□□ -1.45
SF3A1-210ENST00000498259 FAM231CP0DMU5 169 aa5.98□□□□□ -1.45
SF3A1-210ENST00000498259 ZNF25P17030 456 aaPredicted RBP5.98□□□□□ -1.45
SF3A1-210ENST00000498259 PMVKQ15126 192 aa5.98□□□□□ -1.45
SF3A1-210ENST00000498259 MRPL23Q16540 153 aaKnown RBP5.98□□□□□ -1.45
SF3A1-210ENST00000498259 NEGR1Q7Z3B1 354 aa5.98□□□□□ -1.45
SF3A1-210ENST00000498259 ATP6V0E2Q8NHE4 81 aa5.98□□□□□ -1.45
SF3A1-210ENST00000498259 TM2D3Q9BRN9 247 aa5.98□□□□□ -1.45
SF3A1-210ENST00000498259 TMEM243Q9BU79 118 aa5.98□□□□□ -1.45
SF3A1-210ENST00000498259 CSDC2Q9Y534 153 aaKnown RBP5.98□□□□□ -1.45
SF3A1-210ENST00000498259 IGIPA6NJ69 53 aa5.97□□□□□ -1.45
SF3A1-210ENST00000498259 F8VRH5 84 aa5.97□□□□□ -1.45
SF3A1-210ENST00000498259 K7EIL1 84 aa5.97□□□□□ -1.45
SF3A1-210ENST00000498259 DEFB4AO15263 64 aa5.97□□□□□ -1.45
SF3A1-210ENST00000498259 IGKCP01834 107 aa5.97□□□□□ -1.45
SF3A1-210ENST00000498259 NHLRC4P0CG21 123 aaPredicted RBP5.97□□□□□ -1.45
SF3A1-210ENST00000498259 GYPEP15421 78 aa5.97□□□□□ -1.45
SF3A1-210ENST00000498259 SEC11AP67812 179 aa5.97□□□□□ -1.45
SF3A1-210ENST00000498259 AMMECR1LQ6DCA0 310 aa5.97□□□□□ -1.45
SF3A1-210ENST00000498259 SBSPONQ8IVN8 264 aa5.97□□□□□ -1.45
SF3A1-210ENST00000498259 C11orf45Q8TAV5 145 aa5.97□□□□□ -1.45
SF3A1-210ENST00000498259 PHLDA1Q8WV24 401 aaPredicted RBP5.97□□□□□ -1.45
SF3A1-210ENST00000498259 CHTOPQ9Y3Y2 248 aaKnown RBP5.97□□□□□ -1.45
SF3A1-210ENST00000498259 ICOSQ9Y6W8 199 aa5.97□□□□□ -1.45
SF3A1-210ENST00000498259 MRPS36P82909 103 aaKnown RBP5.96□□□□□ -1.46
SF3A1-210ENST00000498259 LINC00173Q6ZV60 143 aa5.96□□□□□ -1.46
SF3A1-210ENST00000498259 MRAPQ8TCY5 172 aa5.96□□□□□ -1.46
SF3A1-210ENST00000498259 BAALCQ8WXS3 180 aa5.96□□□□□ -1.46
SF3A1-210ENST00000498259 TRBV6-8A0A0A6YYG3 113 aa5.95□□□□□ -1.46
SF3A1-210ENST00000498259 IGHV3-38A0A0C4DH36 116 aa5.95□□□□□ -1.46
SF3A1-210ENST00000498259 HTN3P15516 51 aa5.95□□□□□ -1.46
SF3A1-210ENST00000498259 HERVK_113P61574 105 aa5.95□□□□□ -1.46
SF3A1-210ENST00000498259 RPL39P62891 51 aaKnown RBP5.95□□□□□ -1.46
SF3A1-210ENST00000498259 ODF1Q14990 250 aa5.95□□□□□ -1.46
SF3A1-210ENST00000498259 SPATA45Q537H7 98 aa5.95□□□□□ -1.46
SF3A1-210ENST00000498259 MRPL52Q86TS9 123 aaKnown RBP5.95□□□□□ -1.46
SF3A1-210ENST00000498259 OR5A1Q8NGJ0 315 aa5.95□□□□□ -1.46
SF3A1-210ENST00000498259 B9D2Q9BPU9 175 aa5.95□□□□□ -1.46
SF3A1-210ENST00000498259 PMCHL2Q9BQD1 86 aa5.95□□□□□ -1.46
SF3A1-210ENST00000498259 CHCHD7Q9BUK0 85 aa5.95□□□□□ -1.46
SF3A1-210ENST00000498259 CST9LQ9H4G1 147 aa5.95□□□□□ -1.46
SF3A1-210ENST00000498259 PAM16Q9Y3D7 125 aa5.95□□□□□ -1.46
SF3A1-210ENST00000498259 TRRAPQ9Y4A5 3859 aa5.95□□□□□ -1.46
SF3A1-210ENST00000498259 A0A0J9YWU9 116 aa5.94□□□□□ -1.46
SF3A1-210ENST00000498259 PRSS29PA6NIE9 313 aa5.94□□□□□ -1.46
SF3A1-210ENST00000498259 C12orf74Q32Q52 190 aa5.94□□□□□ -1.46
SF3A1-210ENST00000498259 Q8N976 141 aa5.94□□□□□ -1.46
SF3A1-210ENST00000498259 CHCHD5Q9BSY4 110 aa5.94□□□□□ -1.46
SF3A1-210ENST00000498259 CELA1Q9UNI1 258 aa5.94□□□□□ -1.46
SF3A1-210ENST00000498259 UBE2D4Q9Y2X8 147 aa5.94□□□□□ -1.46
SF3A1-210ENST00000498259 IGLV4-3A0A075B6K6 122 aa5.93□□□□□ -1.46
SF3A1-210ENST00000498259 DEFB131BA0A096LNP1 70 aa5.93□□□□□ -1.46
SF3A1-210ENST00000498259 TRAV10A0A0B4J240 114 aa5.93□□□□□ -1.46
SF3A1-210ENST00000498259 CCL25O15444 150 aa5.93□□□□□ -1.46
SF3A1-210ENST00000498259 LINC00694P0DN24 101 aa5.93□□□□□ -1.46
SF3A1-210ENST00000498259 FGF6P10767 208 aa5.93□□□□□ -1.46
SF3A1-210ENST00000498259 TIRAPP58753 221 aa5.93□□□□□ -1.46
SF3A1-210ENST00000498259 ZNF664Q8N3J9 261 aa5.93□□□□□ -1.46
SF3A1-210ENST00000498259 RETNQ9HD89 108 aa5.93□□□□□ -1.46
SF3A1-210ENST00000498259 MRPL35Q9NZE8 188 aaKnown RBP5.93□□□□□ -1.46
SF3A1-210ENST00000498259 UQCR10Q9UDW1 63 aa5.93□□□□□ -1.46
SF3A1-210ENST00000498259 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.92□□□□□ -1.46
SF3A1-210ENST00000498259 TRAV8-6A0A0B4J262 113 aa5.92□□□□□ -1.46
SF3A1-210ENST00000498259 A0A0J9YY99 117 aa5.92□□□□□ -1.46
SF3A1-210ENST00000498259 A0A1B0GUV1 79 aa5.92□□□□□ -1.46
SF3A1-210ENST00000498259 IGKV2-29A2NJV5 120 aaPredicted RBP5.92□□□□□ -1.46
SF3A1-210ENST00000498259 PCP4L1A6NKN8 68 aa5.92□□□□□ -1.46
SF3A1-210ENST00000498259 TMEM262E9PQX1 116 aa5.92□□□□□ -1.46
SF3A1-210ENST00000498259 H3BRM9 83 aa5.92□□□□□ -1.46
SF3A1-210ENST00000498259 PRB2P02812 416 aaPredicted RBP5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 371.3 ms