RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 C8orf49Q96NF6 230 aa3.9□□□□□ -1.79
USP54-216ENST00000498143 DPM3Q9P2X0 92 aa3.9□□□□□ -1.79
USP54-216ENST00000498143 ANK1P16157 1881 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 A0A1W2PQD3 144 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 AVPP01185 164 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 IGKV1D-16P01601 117 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 EGR2P11161 476 aaPredicted RBP3.89□□□□□ -1.79
USP54-216ENST00000498143 DKK2Q9UBU2 259 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 IGKV1D-13A0A0B4J2D9 117 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 C2orf70A6NJV1 201 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 IGKV1-13P0DP09 117 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 ZNF32P17041 273 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 LYZP61626 148 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 CFHR3Q02985 330 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 CEMP1Q6PRD7 247 aaPredicted RBP3.89□□□□□ -1.79
USP54-216ENST00000498143 KLK15Q9H2R5 256 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 LHFPL6Q9Y693 200 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 IGHV3-43A0A0B4J1X8 118 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 IGKV1D-33P01593 117 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 IGKV1-33P01594 117 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 IGHV3-43DP0DP04 118 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 Q6ZQT7 251 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 Q6ZSN1 163 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 PCP2Q8IVA1 136 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 Q9HAA7 133 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 CMC4P56277 68 aaPredicted RBP3.89□□□□□ -1.79
USP54-216ENST00000498143 C7orf65Q6ZTY9 151 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 PRR15Q8IV56 129 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 C11orf52Q96A22 123 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 CYYR1Q96J86 154 aa3.89□□□□□ -1.79
USP54-216ENST00000498143 F8WEM9 126 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 LINC01619G3V211 115 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 IGKV3-11P04433 115 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 GFRA4Q9GZZ7 299 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 TRAV7A0A075B6U4 112 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 IGKV1-9A0A0C4DH69 117 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 RPL27AP46776 148 aaKnown RBP3.88□□□□□ -1.79
USP54-216ENST00000498143 C11orf71Q6IPW1 123 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 ZFP2Q6ZN57 461 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 LYPD6Q86Y78 171 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 SBSPONQ8IVN8 264 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 RETNLBQ9BQ08 111 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 TP53TG3Q9ULZ0 132 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 FHL3Q13643 280 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 DEFB136Q30KP8 78 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 GGNQ86UU5 652 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 CELA1Q9UNI1 258 aa3.88□□□□□ -1.79
USP54-216ENST00000498143 TRAV23DV6A0A075B6W5 121 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 TRGV3P03979 118 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 BAALC-AS2P0C853 105 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 MRGPRG-AS1Q2M3A8 158 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 MYO16Q9Y6X6 1858 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 IGHV4-30-4P0DP06 118 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 CCL1P22362 96 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 LINC00173Q6ZV60 143 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 ZNRD1Q9P1U0 126 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 XCL1P47992 114 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 Q6ZSR3 168 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 C22orf34Q6ZV56 151 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 C11orf53Q8IXP5 236 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 TMEM141Q96I45 108 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 C16orf95Q9H693 158 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 XCL2Q9UBD3 114 aa3.87□□□□□ -1.79
USP54-216ENST00000498143 NDUFB1O75438 58 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 NPPCP23582 126 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 ODF3L1Q8IXM7 274 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 ZNF581Q9P0T4 197 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 IGKV1-5P01602 117 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 CRPP02741 224 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 TEX49A0A1B0GTD5 131 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 FAM27BQ5VT28 67 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 Q6ZRM9 215 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 LIMD2Q9BT23 127 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 Q9H8V8 135 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 ZFHX3Q15911 3703 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 A0A0G2JRQ6 117 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 K7EMT4 169 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 MIFP14174 115 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 CD24P25063 80 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 FAM19A1Q7Z5A9 133 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 TMEM254Q8TBM7 123 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 ZNF492Q9P255 531 aa3.86□□□□□ -1.79
USP54-216ENST00000498143 ZZEF1O43149 2961 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 IGKV1-8A0A0C4DH67 115 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 C17orf98A8MV24 154 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 IGHV3-13P01766 116 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 LINC00269Q8N2A0 174 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 PLXNB1O43157 2135 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 M0R1W7 72 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 MLANAQ16655 118 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 DEFB135Q30KP9 77 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 TMEM30BQ3MIR4 351 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 Q6JHZ5 121 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 ATP11AUNQ6ZP68 121 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 SDIM1Q6ZPB5 146 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 Q8N976 141 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 ZNF503Q96F45 646 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 TET2Q6N021 2002 aaPredicted RBP3.85□□□□□ -1.79
USP54-216ENST00000498143 TRAV12-1A0A0B4J245 112 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 FAM19A3Q7Z5A8 133 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms