RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 AMTP48728 403 aa8.12□□□□□ -1.11
CUX1-210ENST00000497815 POLR2KP53803 58 aaKnown RBP8.12□□□□□ -1.11
CUX1-210ENST00000497815 Q8N3U1 123 aa8.12□□□□□ -1.11
CUX1-210ENST00000497815 C20orf78Q9BR46 151 aa8.12□□□□□ -1.11
CUX1-210ENST00000497815 TRBV27A0A0K0K1C4 114 aa8.11□□□□□ -1.11
CUX1-210ENST00000497815 TMEM262E9PQX1 116 aa8.11□□□□□ -1.11
CUX1-210ENST00000497815 PHOX2AO14813 284 aa8.11□□□□□ -1.11
CUX1-210ENST00000497815 TSHBP01222 138 aa8.11□□□□□ -1.11
CUX1-210ENST00000497815 FCER1GP30273 86 aa8.11□□□□□ -1.11
CUX1-210ENST00000497815 GAGE6Q13070 117 aa8.11□□□□□ -1.11
CUX1-210ENST00000497815 SMIM2Q9BVW6 85 aa8.11□□□□□ -1.11
CUX1-210ENST00000497815 MAP1LC3AQ9H492 121 aa8.11□□□□□ -1.11
CUX1-210ENST00000497815 NBDYA0A0U1RRE5 68 aa8.1□□□□□ -1.11
CUX1-210ENST00000497815 IQCJQ1A5X6 159 aa8.1□□□□□ -1.11
CUX1-210ENST00000497815 KIR2DL4Q99706 377 aa8.1□□□□□ -1.11
CUX1-210ENST00000497815 ALKBH7Q9BT30 221 aaPredicted RBP8.1□□□□□ -1.11
CUX1-210ENST00000497815 TMEM243Q9BU79 118 aa8.1□□□□□ -1.11
CUX1-210ENST00000497815 LAMTOR2Q9Y2Q5 125 aa8.1□□□□□ -1.11
CUX1-210ENST00000497815 ALMS1Q8TCU4 4167 aa8.1□□□□□ -1.11
CUX1-210ENST00000497815 LYSTQ99698 3801 aa8.1□□□□□ -1.11
CUX1-210ENST00000497815 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.09□□□□□ -1.11
CUX1-210ENST00000497815 A0A087WX48 190 aa8.09□□□□□ -1.11
CUX1-210ENST00000497815 IGKV2-29A2NJV5 120 aaPredicted RBP8.09□□□□□ -1.11
CUX1-210ENST00000497815 COLCA2A8K830 154 aa8.09□□□□□ -1.11
CUX1-210ENST00000497815 UBE2L6O14933 153 aa8.09□□□□□ -1.11
CUX1-210ENST00000497815 DNAH10OSP0CZ25 163 aa8.09□□□□□ -1.11
CUX1-210ENST00000497815 NIT1Q86X76 327 aa8.09□□□□□ -1.11
CUX1-210ENST00000497815 TCAPO15273 167 aa8.08□□□□□ -1.12
CUX1-210ENST00000497815 RPL32P62910 135 aaKnown RBP8.08□□□□□ -1.12
CUX1-210ENST00000497815 LINC01556Q5JQF7 62 aa8.08□□□□□ -1.12
CUX1-210ENST00000497815 CHCHD7Q9BUK0 85 aa8.08□□□□□ -1.12
CUX1-210ENST00000497815 KRTAP1-5Q9BYS1 174 aa8.08□□□□□ -1.12
CUX1-210ENST00000497815 KMT2CQ8NEZ4 4911 aaKnown RBP8.08□□□□□ -1.12
CUX1-210ENST00000497815 TRAV9-2A0A087WT02 112 aa8.07□□□□□ -1.12
CUX1-210ENST00000497815 RAB5AP20339 215 aa8.07□□□□□ -1.12
CUX1-210ENST00000497815 MPV17L2Q567V2 206 aa8.07□□□□□ -1.12
CUX1-210ENST00000497815 TTC32Q5I0X7 151 aa8.07□□□□□ -1.12
CUX1-210ENST00000497815 Q8N976 141 aa8.07□□□□□ -1.12
CUX1-210ENST00000497815 PRSS47A8MTI9 375 aa8.06□□□□□ -1.12
CUX1-210ENST00000497815 TRGC2P03986 189 aa8.06□□□□□ -1.12
CUX1-210ENST00000497815 IFI27P40305 119 aaPredicted RBP8.06□□□□□ -1.12
CUX1-210ENST00000497815 AMMECR1LQ6DCA0 310 aa8.06□□□□□ -1.12
CUX1-210ENST00000497815 Q6ZR54 194 aa8.06□□□□□ -1.12
CUX1-210ENST00000497815 Q8N8P6 123 aa8.06□□□□□ -1.12
CUX1-210ENST00000497815 PRSS3P2Q8NHM4 247 aa8.06□□□□□ -1.12
CUX1-210ENST00000497815 ESDP10768 282 aa8.05□□□□□ -1.12
CUX1-210ENST00000497815 PKIAP61925 76 aa8.05□□□□□ -1.12
CUX1-210ENST00000497815 RBX1P62877 108 aa8.05□□□□□ -1.12
CUX1-210ENST00000497815 RNASEKQ6P5S7 137 aaKnown RBP8.05□□□□□ -1.12
CUX1-210ENST00000497815 NXT2Q9NPJ8 142 aaKnown RBP8.05□□□□□ -1.12
CUX1-210ENST00000497815 KLK12Q9UKR0 248 aa8.05□□□□□ -1.12
CUX1-210ENST00000497815 VPS13DQ5THJ4 4388 aa8.05□□□□□ -1.12
CUX1-210ENST00000497815 DNAH1Q9P2D7 4330 aa8.05□□□□□ -1.12
CUX1-210ENST00000497815 ANGP03950 147 aaKnown RBP8.04□□□□□ -1.12
CUX1-210ENST00000497815 FGF6P10767 208 aa8.04□□□□□ -1.12
CUX1-210ENST00000497815 LORP23490 312 aaPredicted RBP8.04□□□□□ -1.12
CUX1-210ENST00000497815 C10orf126Q8N4M7 172 aa8.04□□□□□ -1.12
CUX1-210ENST00000497815 Q9HAA7 133 aa8.04□□□□□ -1.12
CUX1-210ENST00000497815 RYR2Q92736 4967 aa8.04□□□□□ -1.12
CUX1-210ENST00000497815 HYDINQ4G0P3 5121 aa8.04□□□□□ -1.12
CUX1-210ENST00000497815 SACSQ9NZJ4 4579 aa8.03□□□□□ -1.12
CUX1-210ENST00000497815 IGLV4-60A0A075B6I1 120 aa8.03□□□□□ -1.12
CUX1-210ENST00000497815 H7C423 109 aa8.03□□□□□ -1.12
CUX1-210ENST00000497815 CLPSL2Q6UWE3 100 aa8.03□□□□□ -1.12
CUX1-210ENST00000497815 FA2HQ7L5A8 372 aa8.03□□□□□ -1.12
CUX1-210ENST00000497815 C20orf203Q8NBC4 194 aa8.03□□□□□ -1.12
CUX1-210ENST00000497815 C18orf32Q8TCD1 76 aa8.03□□□□□ -1.12
CUX1-210ENST00000497815 IBA57-AS1B1ANH7 110 aa8.02□□□□□ -1.13
CUX1-210ENST00000497815 K7EP13 123 aa8.02□□□□□ -1.13
CUX1-210ENST00000497815 RPL39P62891 51 aaKnown RBP8.02□□□□□ -1.13
CUX1-210ENST00000497815 LAGE3Q14657 143 aa8.02□□□□□ -1.13
CUX1-210ENST00000497815 ORMDL2Q53FV1 153 aa8.02□□□□□ -1.13
CUX1-210ENST00000497815 C1orf134Q5TEV5 83 aa8.02□□□□□ -1.13
CUX1-210ENST00000497815 LINC00269Q8N2A0 174 aa8.02□□□□□ -1.13
CUX1-210ENST00000497815 C6orf223Q8N319 242 aa8.02□□□□□ -1.13
CUX1-210ENST00000497815 UBE2WQ96B02 151 aa8.02□□□□□ -1.13
CUX1-210ENST00000497815 TMEM18Q96B42 140 aa8.02□□□□□ -1.13
CUX1-210ENST00000497815 TMEM101Q96IK0 257 aa8.02□□□□□ -1.13
CUX1-210ENST00000497815 CRPP02741 224 aa8.01□□□□□ -1.13
CUX1-210ENST00000497815 DGAT2L7PQ6IED9 249 aa8.01□□□□□ -1.13
CUX1-210ENST00000497815 OR5A1Q8NGJ0 315 aa8.01□□□□□ -1.13
CUX1-210ENST00000497815 IGKV3OR2-268A0A0C4DH90 116 aa8□□□□□ -1.13
CUX1-210ENST00000497815 A0A1B0GUV1 79 aa8□□□□□ -1.13
CUX1-210ENST00000497815 ZNF25P17030 456 aaPredicted RBP8□□□□□ -1.13
CUX1-210ENST00000497815 BTF3P20290 206 aaKnown RBP8□□□□□ -1.13
CUX1-210ENST00000497815 UBE2D4Q9Y2X8 147 aa8□□□□□ -1.13
CUX1-210ENST00000497815 RYR3Q15413 4870 aa8□□□□□ -1.13
CUX1-210ENST00000497815 TRAV8-3A0A0A6YYJ7 113 aa7.99□□□□□ -1.13
CUX1-210ENST00000497815 K7EMI3 77 aa7.99□□□□□ -1.13
CUX1-210ENST00000497815 REG3AQ06141 175 aa7.99□□□□□ -1.13
CUX1-210ENST00000497815 SMAGPQ0VAQ4 97 aa7.99□□□□□ -1.13
CUX1-210ENST00000497815 RNASE13Q5GAN3 156 aaKnown RBP7.99□□□□□ -1.13
CUX1-210ENST00000497815 ENHOQ6UWT2 76 aa7.99□□□□□ -1.13
CUX1-210ENST00000497815 C2orf66Q6UXQ4 117 aa7.99□□□□□ -1.13
CUX1-210ENST00000497815 MRPL52Q86TS9 123 aaKnown RBP7.99□□□□□ -1.13
CUX1-210ENST00000497815 URB1-AS1Q96HZ7 61 aa7.99□□□□□ -1.13
CUX1-210ENST00000497815 CYSLTR1Q9Y271 337 aa7.99□□□□□ -1.13
CUX1-210ENST00000497815 RTL8CO15255 209 aa7.98□□□□□ -1.13
CUX1-210ENST00000497815 LINC00614P0C842 121 aa7.98□□□□□ -1.13
CUX1-210ENST00000497815 RAB5BP61020 215 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms