RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 PPP1R17O96001 155 aa0.19□□□□□ -2.38
SMC4-225ENST00000497203 SPINK8P0C7L1 97 aa0.19□□□□□ -2.38
SMC4-225ENST00000497203 CCL18P55774 89 aa0.19□□□□□ -2.38
SMC4-225ENST00000497203 BTG2P78543 158 aa0.19□□□□□ -2.38
SMC4-225ENST00000497203 RBM3P98179 157 aaKnown RBP0.19□□□□□ -2.38
SMC4-225ENST00000497203 CFAP126Q5VTH2 177 aa0.19□□□□□ -2.38
SMC4-225ENST00000497203 Q8N8P6 123 aa0.19□□□□□ -2.38
SMC4-225ENST00000497203 PATJQ8NI35 1801 aa0.19□□□□□ -2.38
SMC4-225ENST00000497203 PRDM2Q13029 1718 aa0.18□□□□□ -2.38
SMC4-225ENST00000497203 C10orf128Q5T292 105 aa0.18□□□□□ -2.38
SMC4-225ENST00000497203 LSM10Q969L4 123 aaKnown RBP0.18□□□□□ -2.38
SMC4-225ENST00000497203 CNFNQ9BYD5 112 aa0.18□□□□□ -2.38
SMC4-225ENST00000497203 ZNF609O15014 1411 aa0.18□□□□□ -2.38
SMC4-225ENST00000497203 PHLPP1O60346 1717 aa0.18□□□□□ -2.38
SMC4-225ENST00000497203 FOCADQ5VW36 1801 aa0.17□□□□□ -2.38
SMC4-225ENST00000497203 DOCK2Q92608 1830 aa0.17□□□□□ -2.38
SMC4-225ENST00000497203 LENEPQ9Y5L5 61 aa0.17□□□□□ -2.38
SMC4-225ENST00000497203 U3KQA8 63 aa0.17□□□□□ -2.38
SMC4-225ENST00000497203 FAM208BQ5VWN6 2430 aa0.17□□□□□ -2.38
SMC4-225ENST00000497203 DMBT1Q9UGM3 2413 aaPredicted RBP0.16□□□□□ -2.38
SMC4-225ENST00000497203 PPIP5K1Q6PFW1 1433 aa0.16□□□□□ -2.38
SMC4-225ENST00000497203 UNC79Q9P2D8 2635 aa0.16□□□□□ -2.38
SMC4-225ENST00000497203 FGF7P21781 194 aa0.16□□□□□ -2.38
SMC4-225ENST00000497203 Q56UQ5 140 aa0.16□□□□□ -2.38
SMC4-225ENST00000497203 TTC9CQ8N5M4 171 aa0.16□□□□□ -2.38
SMC4-225ENST00000497203 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.16□□□□□ -2.38
SMC4-225ENST00000497203 SMIM4Q8WVI0 70 aa0.16□□□□□ -2.38
SMC4-225ENST00000497203 PPP3R2Q96LZ3 170 aa0.16□□□□□ -2.38
SMC4-225ENST00000497203 NPVFQ9HCQ7 196 aa0.16□□□□□ -2.38
SMC4-225ENST00000497203 HRNRQ86YZ3 2850 aaPredicted RBP0.16□□□□□ -2.38
SMC4-225ENST00000497203 DOCK1Q14185 1865 aa0.16□□□□□ -2.38
SMC4-225ENST00000497203 ANKRD17O75179 2603 aaKnown RBP0.16□□□□□ -2.38
SMC4-225ENST00000497203 ARAP2Q8WZ64 1704 aa0.16□□□□□ -2.38
SMC4-225ENST00000497203 ANK2Q01484 3957 aa0.15□□□□□ -2.38
SMC4-225ENST00000497203 WNK3Q9BYP7 1800 aa0.15□□□□□ -2.38
SMC4-225ENST00000497203 CHD9Q3L8U1 2897 aa0.15□□□□□ -2.39
SMC4-225ENST00000497203 CYP4F30PQ9H0H9 118 aa0.15□□□□□ -2.39
SMC4-225ENST00000497203 FSIP2Q5CZC0 6907 aa0.15□□□□□ -2.39
SMC4-225ENST00000497203 SPTBN2O15020 2390 aa0.14□□□□□ -2.39
SMC4-225ENST00000497203 LRP1Q07954 4544 aaKnown RBP0.14□□□□□ -2.39
SMC4-225ENST00000497203 M0R135 149 aa0.14□□□□□ -2.39
SMC4-225ENST00000497203 SPAG11BQ08648 103 aa0.14□□□□□ -2.39
SMC4-225ENST00000497203 SPAG11AQ6PDA7 123 aa0.14□□□□□ -2.39
SMC4-225ENST00000497203 SCN3BQ9NY72 215 aa0.14□□□□□ -2.39
SMC4-225ENST00000497203 MRC1P22897 1456 aa0.14□□□□□ -2.39
SMC4-225ENST00000497203 CTXND1A0A1B0GTU2 59 aa0.13□□□□□ -2.39
SMC4-225ENST00000497203 PRO0255Q9UI72 69 aa0.13□□□□□ -2.39
SMC4-225ENST00000497203 PLXNB2O15031 1838 aa0.13□□□□□ -2.39
SMC4-225ENST00000497203 KDM3BQ7LBC6 1761 aa0.12□□□□□ -2.39
SMC4-225ENST00000497203 MIF4GDA9UHW6 222 aaKnown RBP0.12□□□□□ -2.39
SMC4-225ENST00000497203 APOC2P02655 101 aa0.12□□□□□ -2.39
SMC4-225ENST00000497203 IFITM1P13164 125 aa0.12□□□□□ -2.39
SMC4-225ENST00000497203 V9GYH0 126 aa0.12□□□□□ -2.39
SMC4-225ENST00000497203 HIVEP3Q5T1R4 2406 aa0.12□□□□□ -2.39
SMC4-225ENST00000497203 MBD5Q9P267 1494 aa0.11□□□□□ -2.39
SMC4-225ENST00000497203 IFNGP01579 166 aa0.11□□□□□ -2.39
SMC4-225ENST00000497203 S100A3P33764 101 aa0.11□□□□□ -2.39
SMC4-225ENST00000497203 C8orf59Q8N0T1 100 aaPredicted RBP0.11□□□□□ -2.39
SMC4-225ENST00000497203 BCL9LQ86UU0 1499 aa0.1□□□□□ -2.39
SMC4-225ENST00000497203 LRRC37A2A6NM11 1700 aa0.1□□□□□ -2.39
SMC4-225ENST00000497203 BIVM-ERCC5R4GMW8 1640 aa0.1□□□□□ -2.39
SMC4-225ENST00000497203 UBR5O95071 2799 aaPredicted RBP0.1□□□□□ -2.39
SMC4-225ENST00000497203 CATR1Q13166 79 aa0.1□□□□□ -2.39
SMC4-225ENST00000497203 COX17Q14061 63 aa0.1□□□□□ -2.39
SMC4-225ENST00000497203 SPCS1Q9Y6A9 102 aa0.1□□□□□ -2.39
SMC4-225ENST00000497203 MACF1Q9UPN3 7388 aaKnown RBP0.1□□□□□ -2.39
SMC4-225ENST00000497203 EFCAB10A6NFE3 127 aa0.09□□□□□ -2.4
SMC4-225ENST00000497203 CFDP00746 253 aaPredicted RBP0.09□□□□□ -2.4
SMC4-225ENST00000497203 AKAIN1P0CW23 69 aa0.09□□□□□ -2.4
SMC4-225ENST00000497203 MGST2Q99735 147 aa0.09□□□□□ -2.4
SMC4-225ENST00000497203 SPANXDQ9BXN6 97 aa0.09□□□□□ -2.4
SMC4-225ENST00000497203 SPRR2GQ9BYE4 73 aa0.09□□□□□ -2.4
SMC4-225ENST00000497203 CPSF1Q10570 1443 aaKnown RBP0.09□□□□□ -2.4
SMC4-225ENST00000497203 PLCE1Q9P212 2302 aa0.09□□□□□ -2.4
SMC4-225ENST00000497203 C2CD3Q4AC94 2353 aa0.09□□□□□ -2.4
SMC4-225ENST00000497203 COL7A1Q02388 2944 aa0.08□□□□□ -2.4
SMC4-225ENST00000497203 SSSCA1O60232 199 aa0.08□□□□□ -2.4
SMC4-225ENST00000497203 RPL13AP3Q6NVV1 102 aa0.08□□□□□ -2.4
SMC4-225ENST00000497203 DYNLRB1Q9NP97 96 aa0.08□□□□□ -2.4
SMC4-225ENST00000497203 KTN1Q86UP2 1357 aaKnown RBP0.07□□□□□ -2.4
SMC4-225ENST00000497203 DOPEY2Q9Y3R5 2298 aa0.07□□□□□ -2.4
SMC4-225ENST00000497203 ZNF292O60281 2723 aa0.07□□□□□ -2.4
SMC4-225ENST00000497203 TRBV7-3A0A075B6L6 115 aa0.07□□□□□ -2.4
SMC4-225ENST00000497203 TRAV22A0A0B4J277 110 aa0.07□□□□□ -2.4
SMC4-225ENST00000497203 LOC100130705A0A1B0GUX0 176 aa0.07□□□□□ -2.4
SMC4-225ENST00000497203 M0R3E3 92 aa0.07□□□□□ -2.4
SMC4-225ENST00000497203 HAMPP81172 84 aa0.07□□□□□ -2.4
SMC4-225ENST00000497203 C5orf38Q86SI9 138 aa0.07□□□□□ -2.4
SMC4-225ENST00000497203 PP6455Q8WZ26 134 aa0.07□□□□□ -2.4
SMC4-225ENST00000497203 AMELXQ99217 191 aa0.07□□□□□ -2.4
SMC4-225ENST00000497203 NDUFA4L2Q9NRX3 87 aa0.07□□□□□ -2.4
SMC4-225ENST00000497203 CELSR1Q9NYQ6 3014 aa0.07□□□□□ -2.4
SMC4-225ENST00000497203 NHSL1Q5SYE7 1610 aa0.06□□□□□ -2.4
SMC4-225ENST00000497203 WNK2Q9Y3S1 2297 aa0.06□□□□□ -2.4
SMC4-225ENST00000497203 UQCR11O14957 56 aa0.06□□□□□ -2.4
SMC4-225ENST00000497203 APOC3P02656 99 aa0.06□□□□□ -2.4
SMC4-225ENST00000497203 TPPP2P59282 170 aa0.06□□□□□ -2.4
SMC4-225ENST00000497203 SARNPP82979 210 aaKnown RBP0.06□□□□□ -2.4
SMC4-225ENST00000497203 TMEM170BQ5T4T1 132 aa0.06□□□□□ -2.4
SMC4-225ENST00000497203 COMMD6Q7Z4G1 85 aa0.06□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms