RNA–Protein interactions for RNA: ENST00000493601.5

PTPRU-208, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 5

Gene PTPRU, Length 695 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-208ENST00000493601 WDR73Q6P4I2 378 aa10.67□□□□□ -0.7
PTPRU-208ENST00000493601 SDIM1Q6ZPB5 146 aa10.67□□□□□ -0.7
PTPRU-208ENST00000493601 C9orf62Q8N4C0 152 aa10.67□□□□□ -0.7
PTPRU-208ENST00000493601 AP5S1Q9NUS5 200 aa10.67□□□□□ -0.7
PTPRU-208ENST00000493601 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.66□□□□□ -0.7
PTPRU-208ENST00000493601 AMTP48728 403 aa10.66□□□□□ -0.7
PTPRU-208ENST00000493601 PANO1I0J062 215 aa10.65□□□□□ -0.7
PTPRU-208ENST00000493601 TAGLN2P37802 199 aaKnown RBP10.65□□□□□ -0.7
PTPRU-208ENST00000493601 CNFNQ9BYD5 112 aa10.65□□□□□ -0.7
PTPRU-208ENST00000493601 GFRA4Q9GZZ7 299 aa10.65□□□□□ -0.7
PTPRU-208ENST00000493601 FAT3Q8TDW7 4589 aa10.64□□□□□ -0.71
PTPRU-208ENST00000493601 IGHV3-64A0A075B6Q5 118 aa10.64□□□□□ -0.71
PTPRU-208ENST00000493601 CIRBPQ14011 172 aaKnown RBP10.64□□□□□ -0.71
PTPRU-208ENST00000493601 TWIST1Q15672 202 aa10.64□□□□□ -0.71
PTPRU-208ENST00000493601 NUDT10Q8NFP7 164 aa10.64□□□□□ -0.71
PTPRU-208ENST00000493601 NUDT11Q96G61 164 aa10.64□□□□□ -0.71
PTPRU-208ENST00000493601 RPP21Q9H633 154 aaKnown RBP10.64□□□□□ -0.71
PTPRU-208ENST00000493601 HNRNPA3P51991 378 aaKnown RBP10.63□□□□□ -0.71
PTPRU-208ENST00000493601 SLC51BQ86UW2 128 aa10.62□□□□□ -0.71
PTPRU-208ENST00000493601 TCTE3Q8IZS6 198 aa10.62□□□□□ -0.71
PTPRU-208ENST00000493601 RNF185Q96GF1 192 aa10.62□□□□□ -0.71
PTPRU-208ENST00000493601 PKHD1L1Q86WI1 4243 aa10.62□□□□□ -0.71
PTPRU-208ENST00000493601 GATD1Q8NB37 220 aa10.61□□□□□ -0.71
PTPRU-208ENST00000493601 RNASE7Q9H1E1 156 aaKnown RBP10.61□□□□□ -0.71
PTPRU-208ENST00000493601 TRAV26-2A0A0B4J265 109 aa10.6□□□□□ -0.71
PTPRU-208ENST00000493601 K7EN84 100 aa10.6□□□□□ -0.71
PTPRU-208ENST00000493601 NCR2O95944 276 aa10.6□□□□□ -0.71
PTPRU-208ENST00000493601 AMMECR1LQ6DCA0 310 aa10.6□□□□□ -0.71
PTPRU-208ENST00000493601 CFAP161Q6P656 301 aa10.6□□□□□ -0.71
PTPRU-208ENST00000493601 SMIM15Q7Z3B0 74 aa10.6□□□□□ -0.71
PTPRU-208ENST00000493601 DPH3Q96FX2 82 aa10.6□□□□□ -0.71
PTPRU-208ENST00000493601 HMCN2Q8NDA2 5059 aa10.59□□□□□ -0.71
PTPRU-208ENST00000493601 GAGE12HA6NDE8 117 aa10.59□□□□□ -0.71
PTPRU-208ENST00000493601 SLPIP03973 132 aa10.59□□□□□ -0.71
PTPRU-208ENST00000493601 TEX261Q6UWH6 196 aa10.59□□□□□ -0.71
PTPRU-208ENST00000493601 SPACA4Q8TDM5 124 aa10.59□□□□□ -0.71
PTPRU-208ENST00000493601 PLA2G2DQ9UNK4 145 aa10.59□□□□□ -0.71
PTPRU-208ENST00000493601 IGKV3OR2-268A0A0C4DH90 116 aa10.58□□□□□ -0.72
PTPRU-208ENST00000493601 C15orf56Q8N910 161 aa10.58□□□□□ -0.72
PTPRU-208ENST00000493601 OCC1Q8TAD7 63 aa10.58□□□□□ -0.72
PTPRU-208ENST00000493601 A0A087WYN8 130 aa10.57□□□□□ -0.72
PTPRU-208ENST00000493601 H7C423 109 aa10.57□□□□□ -0.72
PTPRU-208ENST00000493601 APCSP02743 223 aa10.57□□□□□ -0.72
PTPRU-208ENST00000493601 CHTF8P0CG12 524 aa10.57□□□□□ -0.72
PTPRU-208ENST00000493601 Q6ZNX1 250 aa10.57□□□□□ -0.72
PTPRU-208ENST00000493601 Q6ZRU5 148 aa10.57□□□□□ -0.72
PTPRU-208ENST00000493601 GTSF1Q8WW33 167 aa10.57□□□□□ -0.72
PTPRU-208ENST00000493601 RPL39LQ96EH5 51 aaKnown RBP10.57□□□□□ -0.72
PTPRU-208ENST00000493601 RNASEKQ6P5S7 137 aaKnown RBP10.56□□□□□ -0.72
PTPRU-208ENST00000493601 CHCHD10Q8WYQ3 142 aaPredicted RBP10.56□□□□□ -0.72
PTPRU-208ENST00000493601 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.55□□□□□ -0.72
PTPRU-208ENST00000493601 IGKV2-29A2NJV5 120 aaPredicted RBP10.55□□□□□ -0.72
PTPRU-208ENST00000493601 TMEM250H0YL14 139 aa10.55□□□□□ -0.72
PTPRU-208ENST00000493601 RPS10P46783 165 aaKnown RBP10.55□□□□□ -0.72
PTPRU-208ENST00000493601 PLAC8Q9NZF1 115 aa10.55□□□□□ -0.72
PTPRU-208ENST00000493601 SDHAF1A6NFY7 115 aa10.54□□□□□ -0.72
PTPRU-208ENST00000493601 A8MWL6 223 aa10.54□□□□□ -0.72
PTPRU-208ENST00000493601 GATCO43716 136 aaKnown RBP10.54□□□□□ -0.72
PTPRU-208ENST00000493601 FGF6P10767 208 aa10.54□□□□□ -0.72
PTPRU-208ENST00000493601 ZNF25P17030 456 aaPredicted RBP10.54□□□□□ -0.72
PTPRU-208ENST00000493601 HIGD2BQ4VC39 106 aa10.54□□□□□ -0.72
PTPRU-208ENST00000493601 C7orf33Q8WU49 177 aa10.54□□□□□ -0.72
PTPRU-208ENST00000493601 GVQW2A0A096LPI5 108 aaPredicted RBP10.53□□□□□ -0.72
PTPRU-208ENST00000493601 NDUFS6O75380 124 aaKnown RBP10.53□□□□□ -0.72
PTPRU-208ENST00000493601 FOXA3P55318 350 aaPredicted RBP10.53□□□□□ -0.72
PTPRU-208ENST00000493601 COX6A2Q02221 97 aa10.53□□□□□ -0.72
PTPRU-208ENST00000493601 FAM231DQ6ZW35 169 aa10.53□□□□□ -0.72
PTPRU-208ENST00000493601 I3L3M4 83 aa10.52□□□□□ -0.73
PTPRU-208ENST00000493601 CT83Q5H943 113 aa10.52□□□□□ -0.73
PTPRU-208ENST00000493601 BORCS7Q96B45 105 aa10.52□□□□□ -0.73
PTPRU-208ENST00000493601 BTF3L4Q96K17 158 aa10.52□□□□□ -0.73
PTPRU-208ENST00000493601 TRBV6-5A0A0K0K1A5 114 aa10.51□□□□□ -0.73
PTPRU-208ENST00000493601 PHOX2AO14813 284 aa10.51□□□□□ -0.73
PTPRU-208ENST00000493601 MT1HL1P0DM35 61 aa10.51□□□□□ -0.73
PTPRU-208ENST00000493601 PMCHP20382 165 aa10.51□□□□□ -0.73
PTPRU-208ENST00000493601 BLOC1S1P78537 153 aa10.51□□□□□ -0.73
PTPRU-208ENST00000493601 OR5A1Q8NGJ0 315 aa10.51□□□□□ -0.73
PTPRU-208ENST00000493601 TMEM101Q96IK0 257 aa10.51□□□□□ -0.73
PTPRU-208ENST00000493601 FOXI1Q12951 378 aa10.5□□□□□ -0.73
PTPRU-208ENST00000493601 MAJINQ3KP22 176 aa10.5□□□□□ -0.73
PTPRU-208ENST00000493601 FAM210AQ96ND0 272 aa10.5□□□□□ -0.73
PTPRU-208ENST00000493601 PKIGQ9Y2B9 76 aa10.5□□□□□ -0.73
PTPRU-208ENST00000493601 IGKV2-24A0A0C4DH68 120 aa10.49□□□□□ -0.73
PTPRU-208ENST00000493601 XCL1P47992 114 aa10.49□□□□□ -0.73
PTPRU-208ENST00000493601 CEBPGP53567 150 aa10.49□□□□□ -0.73
PTPRU-208ENST00000493601 ALKAL2Q6UX46 152 aa10.49□□□□□ -0.73
PTPRU-208ENST00000493601 PRSS3P2Q8NHM4 247 aa10.49□□□□□ -0.73
PTPRU-208ENST00000493601 MRAP2Q96G30 205 aa10.49□□□□□ -0.73
PTPRU-208ENST00000493601 ST20Q9HBF5 79 aa10.49□□□□□ -0.73
PTPRU-208ENST00000493601 FAM231BA6NCW3 169 aa10.48□□□□□ -0.73
PTPRU-208ENST00000493601 TSHBP01222 138 aa10.48□□□□□ -0.73
PTPRU-208ENST00000493601 LYPD6BQ8NI32 183 aa10.48□□□□□ -0.73
PTPRU-208ENST00000493601 LINC00474Q9P2X8 69 aa10.48□□□□□ -0.73
PTPRU-208ENST00000493601 LINC00959A0A1B0GUT2 108 aa10.47□□□□□ -0.73
PTPRU-208ENST00000493601 A0A1B0GUT8 65 aa10.47□□□□□ -0.73
PTPRU-208ENST00000493601 ESDP10768 282 aa10.47□□□□□ -0.73
PTPRU-208ENST00000493601 AKAP14Q86UN6 197 aa10.47□□□□□ -0.73
PTPRU-208ENST00000493601 STPG4Q8N801 248 aa10.47□□□□□ -0.73
PTPRU-208ENST00000493601 SMIM7Q9BQ49 75 aa10.47□□□□□ -0.73
PTPRU-208ENST00000493601 TMEM242Q9NWH2 141 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms