RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 GFRA4Q9GZZ7 299 aa13.42□□□□□ -0.26
HDAC4-209ENST00000487617 A0A1B0GUT8 65 aa13.41□□□□□ -0.26
HDAC4-209ENST00000487617 UBE2L6O14933 153 aa13.41□□□□□ -0.26
HDAC4-209ENST00000487617 HLA-DQA1P01909 254 aa13.41□□□□□ -0.26
HDAC4-209ENST00000487617 FAM74A3Q4VXF1 159 aa13.41□□□□□ -0.26
HDAC4-209ENST00000487617 FAM30AQ9NZY2 134 aa13.41□□□□□ -0.26
HDAC4-209ENST00000487617 FAM231BA6NCW3 169 aa13.4□□□□□ -0.26
HDAC4-209ENST00000487617 C9JQL5 133 aa13.4□□□□□ -0.26
HDAC4-209ENST00000487617 SMR3BP02814 79 aaPredicted RBP13.4□□□□□ -0.26
HDAC4-209ENST00000487617 PEA15Q15121 130 aa13.4□□□□□ -0.26
HDAC4-209ENST00000487617 C14orf177Q52M58 125 aa13.4□□□□□ -0.26
HDAC4-209ENST00000487617 ISOC2Q96AB3 205 aa13.4□□□□□ -0.26
HDAC4-209ENST00000487617 SRSF3P84103 164 aaKnown RBP13.39□□□□□ -0.27
HDAC4-209ENST00000487617 REG3AQ06141 175 aa13.39□□□□□ -0.27
HDAC4-209ENST00000487617 C20orf203Q8NBC4 194 aa13.39□□□□□ -0.27
HDAC4-209ENST00000487617 V9GYV3 84 aa13.39□□□□□ -0.27
HDAC4-209ENST00000487617 ABCA13Q86UQ4 5058 aa13.38□□□□□ -0.27
HDAC4-209ENST00000487617 IGLV4-60A0A075B6I1 120 aa13.38□□□□□ -0.27
HDAC4-209ENST00000487617 A0A1B0GUV1 79 aa13.38□□□□□ -0.27
HDAC4-209ENST00000487617 RPL23P62829 140 aaKnown RBP13.38□□□□□ -0.27
HDAC4-209ENST00000487617 ADIRFQ15847 76 aa13.38□□□□□ -0.27
HDAC4-209ENST00000487617 LINC01620Q4KN68 170 aa13.38□□□□□ -0.27
HDAC4-209ENST00000487617 USP17L23D6RBM5 183 aa13.37□□□□□ -0.27
HDAC4-209ENST00000487617 Q5VSD8 79 aa13.37□□□□□ -0.27
HDAC4-209ENST00000487617 NAT8Q9UHE5 227 aa13.37□□□□□ -0.27
HDAC4-209ENST00000487617 SDHAF1A6NFY7 115 aa13.36□□□□□ -0.27
HDAC4-209ENST00000487617 KRTAP26-1Q6PEX3 210 aa13.36□□□□□ -0.27
HDAC4-209ENST00000487617 TMEM191AQ9H0A3 160 aa13.36□□□□□ -0.27
HDAC4-209ENST00000487617 IGLV10-54A0A075B6I4 117 aa13.35□□□□□ -0.27
HDAC4-209ENST00000487617 NCR2O95944 276 aa13.35□□□□□ -0.27
HDAC4-209ENST00000487617 RIGQ13278 110 aa13.35□□□□□ -0.27
HDAC4-209ENST00000487617 NUP35Q8NFH5 326 aa13.35□□□□□ -0.27
HDAC4-209ENST00000487617 SMDT1Q9H4I9 107 aa13.35□□□□□ -0.27
HDAC4-209ENST00000487617 TRBV6-5A0A0K0K1A5 114 aa13.34□□□□□ -0.27
HDAC4-209ENST00000487617 APCSP02743 223 aa13.34□□□□□ -0.27
HDAC4-209ENST00000487617 PMCHP20382 165 aa13.34□□□□□ -0.27
HDAC4-209ENST00000487617 Q6ZSA8 131 aa13.34□□□□□ -0.27
HDAC4-209ENST00000487617 TRAV8-4A0A0B4J246 113 aa13.33□□□□□ -0.28
HDAC4-209ENST00000487617 FAM229AH3BQW9 127 aa13.33□□□□□ -0.28
HDAC4-209ENST00000487617 GAS8-AS1O95177 125 aa13.33□□□□□ -0.28
HDAC4-209ENST00000487617 AMMECR1LQ6DCA0 310 aa13.33□□□□□ -0.28
HDAC4-209ENST00000487617 RNF185Q96GF1 192 aa13.33□□□□□ -0.28
HDAC4-209ENST00000487617 NAT8BQ9UHF3 227 aa13.33□□□□□ -0.28
HDAC4-209ENST00000487617 I3L3M4 83 aa13.32□□□□□ -0.28
HDAC4-209ENST00000487617 RAB4AP20338 218 aa13.32□□□□□ -0.28
HDAC4-209ENST00000487617 AMN1Q8IY45 258 aa13.32□□□□□ -0.28
HDAC4-209ENST00000487617 MRAP2Q96G30 205 aa13.32□□□□□ -0.28
HDAC4-209ENST00000487617 ST20Q9HBF5 79 aa13.32□□□□□ -0.28
HDAC4-209ENST00000487617 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.31□□□□□ -0.28
HDAC4-209ENST00000487617 IGKV2-29A2NJV5 120 aaPredicted RBP13.31□□□□□ -0.28
HDAC4-209ENST00000487617 PRSS1P07477 247 aa13.31□□□□□ -0.28
HDAC4-209ENST00000487617 H7C423 109 aa13.3□□□□□ -0.28
HDAC4-209ENST00000487617 INAFM2P0DMQ5 153 aa13.3□□□□□ -0.28
HDAC4-209ENST00000487617 RNASEKQ6P5S7 137 aaKnown RBP13.3□□□□□ -0.28
HDAC4-209ENST00000487617 SMIM27A0A1W2PRY6 76 aa13.29□□□□□ -0.28
HDAC4-209ENST00000487617 RPS10P46783 165 aaKnown RBP13.29□□□□□ -0.28
HDAC4-209ENST00000487617 IGKV3OR2-268A0A0C4DH90 116 aa13.28□□□□□ -0.28
HDAC4-209ENST00000487617 FGF6P10767 208 aa13.28□□□□□ -0.28
HDAC4-209ENST00000487617 TMEM242Q9NWH2 141 aa13.28□□□□□ -0.28
HDAC4-209ENST00000487617 SMKR1H3BMG3 65 aa13.27□□□□□ -0.29
HDAC4-209ENST00000487617 TSHBP01222 138 aa13.27□□□□□ -0.29
HDAC4-209ENST00000487617 DGAT2L7PQ6IED9 249 aa13.27□□□□□ -0.29
HDAC4-209ENST00000487617 CLRN3Q8NCR9 226 aa13.27□□□□□ -0.29
HDAC4-209ENST00000487617 POLR2KP53803 58 aaKnown RBP13.26□□□□□ -0.29
HDAC4-209ENST00000487617 CAMPP49913 170 aa13.25□□□□□ -0.29
HDAC4-209ENST00000487617 SCXQ7RTU7 201 aa13.25□□□□□ -0.29
HDAC4-209ENST00000487617 CHAC1Q9BUX1 264 aa13.25□□□□□ -0.29
HDAC4-209ENST00000487617 FAT1Q14517 4588 aa13.25□□□□□ -0.29
HDAC4-209ENST00000487617 TRBV27A0A0K0K1C4 114 aa13.24□□□□□ -0.29
HDAC4-209ENST00000487617 hDV102S1A0JD36 115 aa13.24□□□□□ -0.29
HDAC4-209ENST00000487617 GAGE12HA6NDE8 117 aa13.24□□□□□ -0.29
HDAC4-209ENST00000487617 PPP1R17O96001 155 aa13.24□□□□□ -0.29
HDAC4-209ENST00000487617 ESDP10768 282 aa13.24□□□□□ -0.29
HDAC4-209ENST00000487617 ZNF25P17030 456 aaPredicted RBP13.24□□□□□ -0.29
HDAC4-209ENST00000487617 RAB14P61106 215 aa13.24□□□□□ -0.29
HDAC4-209ENST00000487617 FAM104BQ5XKR9 115 aa13.24□□□□□ -0.29
HDAC4-209ENST00000487617 TMEM101Q96IK0 257 aa13.24□□□□□ -0.29
HDAC4-209ENST00000487617 BTF3L4Q96K17 158 aa13.24□□□□□ -0.29
HDAC4-209ENST00000487617 A0A1B0GW15 77 aa13.23□□□□□ -0.29
HDAC4-209ENST00000487617 MRPL51Q4U2R6 128 aaKnown RBP13.23□□□□□ -0.29
HDAC4-209ENST00000487617 NRACQ8N912 160 aa13.23□□□□□ -0.29
HDAC4-209ENST00000487617 VCYO14598 125 aa13.22□□□□□ -0.29
HDAC4-209ENST00000487617 LINC00528Q8N1L1 170 aa13.22□□□□□ -0.29
HDAC4-209ENST00000487617 C9orf163Q8N9P6 203 aa13.22□□□□□ -0.29
HDAC4-209ENST00000487617 FCER1GP30273 86 aa13.21□□□□□ -0.29
HDAC4-209ENST00000487617 SUMO2P61956 95 aaKnown RBP13.21□□□□□ -0.29
HDAC4-209ENST00000487617 MRPL54Q6P161 138 aaKnown RBP13.21□□□□□ -0.29
HDAC4-209ENST00000487617 OR5A1Q8NGJ0 315 aa13.21□□□□□ -0.29
HDAC4-209ENST00000487617 CIRBP-AS1Q8TBR5 109 aa13.21□□□□□ -0.29
HDAC4-209ENST00000487617 CHCHD10Q8WYQ3 142 aaPredicted RBP13.21□□□□□ -0.29
HDAC4-209ENST00000487617 C7orf77A4D0Y5 90 aa13.2□□□□□ -0.3
HDAC4-209ENST00000487617 AP5S1Q9NUS5 200 aa13.2□□□□□ -0.3
HDAC4-209ENST00000487617 DNAH8Q96JB1 4490 aa13.2□□□□□ -0.3
HDAC4-209ENST00000487617 PLA2G1BP04054 148 aaKnown RBP13.19□□□□□ -0.3
HDAC4-209ENST00000487617 S100A8P05109 93 aa13.19□□□□□ -0.3
HDAC4-209ENST00000487617 CNBPP62633 177 aaKnown RBP13.19□□□□□ -0.3
HDAC4-209ENST00000487617 HBBP68871 147 aa13.19□□□□□ -0.3
HDAC4-209ENST00000487617 CFAP161Q6P656 301 aa13.19□□□□□ -0.3
HDAC4-209ENST00000487617 LINC00862A6NCI5 91 aa13.18□□□□□ -0.3
HDAC4-209ENST00000487617 F8W036 122 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms