RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 RBMY1FQ15415 496 aaKnown RBP13.24□□□□□ -0.29
CCM2-209ENST00000477605 M0QXV9 152 aa13.24□□□□□ -0.29
CCM2-209ENST00000477605 TCL1BO95988 128 aa13.24□□□□□ -0.29
CCM2-209ENST00000477605 DEFB131AP59861 70 aa13.24□□□□□ -0.29
CCM2-209ENST00000477605 ZNF415Q09FC8 603 aa13.24□□□□□ -0.29
CCM2-209ENST00000477605 Q8N2B8 174 aa13.24□□□□□ -0.29
CCM2-209ENST00000477605 PEMTQ9UBM1 199 aa13.24□□□□□ -0.29
CCM2-209ENST00000477605 A4D1N5 150 aa13.23□□□□□ -0.29
CCM2-209ENST00000477605 KNCNA6PVL3 124 aa13.23□□□□□ -0.29
CCM2-209ENST00000477605 TEN1Q86WV5 123 aa13.23□□□□□ -0.29
CCM2-209ENST00000477605 PPDPFLQ8WWR9 84 aa13.23□□□□□ -0.29
CCM2-209ENST00000477605 SPANXA1Q9NS26 97 aa13.23□□□□□ -0.29
CCM2-209ENST00000477605 CD28P10747 220 aa13.22□□□□□ -0.29
CCM2-209ENST00000477605 TMEM263Q8WUH6 116 aaKnown RBP13.22□□□□□ -0.29
CCM2-209ENST00000477605 IGHV3-33P01772 117 aa13.22□□□□□ -0.29
CCM2-209ENST00000477605 SCGB1C2P0DMR2 95 aa13.22□□□□□ -0.29
CCM2-209ENST00000477605 INSL3P51460 131 aa13.22□□□□□ -0.29
CCM2-209ENST00000477605 DNAJC30Q96LL9 226 aa13.22□□□□□ -0.29
CCM2-209ENST00000477605 DUX3Q96PT4 197 aa13.22□□□□□ -0.29
CCM2-209ENST00000477605 ERG28Q9UKR5 140 aa13.21□□□□□ -0.29
CCM2-209ENST00000477605 A0A0J9YXY3 114 aa13.2□□□□□ -0.3
CCM2-209ENST00000477605 SMAGPQ0VAQ4 97 aa13.2□□□□□ -0.3
CCM2-209ENST00000477605 MUSTN1Q8IVN3 82 aa13.2□□□□□ -0.3
CCM2-209ENST00000477605 SPXQ9BT56 116 aa13.2□□□□□ -0.3
CCM2-209ENST00000477605 TIMM21Q9BVV7 248 aa13.2□□□□□ -0.3
CCM2-209ENST00000477605 TINCRA0A1B0GVN0 87 aa13.2□□□□□ -0.3
CCM2-209ENST00000477605 IGHV3-30-3P0DP02 117 aa13.2□□□□□ -0.3
CCM2-209ENST00000477605 SFTA2Q6UW10 78 aa13.2□□□□□ -0.3
CCM2-209ENST00000477605 ZNF418Q8TF45 676 aaPredicted RBP13.2□□□□□ -0.3
CCM2-209ENST00000477605 FAM104AQ969W3 186 aa13.2□□□□□ -0.3
CCM2-209ENST00000477605 CELSR1Q9NYQ6 3014 aa13.2□□□□□ -0.3
CCM2-209ENST00000477605 SVEP1Q4LDE5 3571 aa13.2□□□□□ -0.3
CCM2-209ENST00000477605 F8P00451 2351 aa13.19□□□□□ -0.3
CCM2-209ENST00000477605 IGHV4-31P0DP07 118 aa13.19□□□□□ -0.3
CCM2-209ENST00000477605 SLURP1P55000 103 aa13.19□□□□□ -0.3
CCM2-209ENST00000477605 IGHV1-58A0A0C4DH39 117 aa13.19□□□□□ -0.3
CCM2-209ENST00000477605 RBMY1BA6NDE4 496 aaKnown RBP13.18□□□□□ -0.3
CCM2-209ENST00000477605 RBMY1EA6NEQ0 496 aaKnown RBP13.18□□□□□ -0.3
CCM2-209ENST00000477605 RBMY1DP0C7P1 496 aaKnown RBP13.18□□□□□ -0.3
CCM2-209ENST00000477605 BEAN1Q3B7T3 259 aa13.18□□□□□ -0.3
CCM2-209ENST00000477605 C4orf3Q8WVX3 66 aa13.18□□□□□ -0.3
CCM2-209ENST00000477605 CLUHP3Q96NS8 147 aa13.18□□□□□ -0.3
CCM2-209ENST00000477605 TEP1Q99973 2627 aaKnown RBP13.18□□□□□ -0.3
CCM2-209ENST00000477605 RAX2Q96IS3 184 aa13.17□□□□□ -0.3
CCM2-209ENST00000477605 CHCHD7Q9BUK0 85 aa13.17□□□□□ -0.3
CCM2-209ENST00000477605 BEX4Q9NWD9 120 aaPredicted RBP13.17□□□□□ -0.3
CCM2-209ENST00000477605 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.17□□□□□ -0.3
CCM2-209ENST00000477605 IGHV3-73A0A0B4J1V6 119 aa13.17□□□□□ -0.3
CCM2-209ENST00000477605 IGHV3-53P01767 116 aa13.17□□□□□ -0.3
CCM2-209ENST00000477605 HTN1P15515 57 aa13.17□□□□□ -0.3
CCM2-209ENST00000477605 SPANXDQ9BXN6 97 aa13.17□□□□□ -0.3
CCM2-209ENST00000477605 SPANXCQ9NY87 97 aa13.17□□□□□ -0.3
CCM2-209ENST00000477605 PRRC2AP48634 2157 aaKnown RBP13.17□□□□□ -0.3
CCM2-209ENST00000477605 HIVEP1P15822 2718 aa13.16□□□□□ -0.3
CCM2-209ENST00000477605 IGHV3-64A0A075B6Q5 118 aa13.16□□□□□ -0.3
CCM2-209ENST00000477605 PROK1P58294 105 aa13.16□□□□□ -0.3
CCM2-209ENST00000477605 RNF183Q96D59 192 aa13.16□□□□□ -0.3
CCM2-209ENST00000477605 UBE2D4Q9Y2X8 147 aa13.16□□□□□ -0.3
CCM2-209ENST00000477605 EIF4EBP3O60516 100 aaPredicted RBP13.16□□□□□ -0.3
CCM2-209ENST00000477605 TMEM61Q8N0U2 210 aa13.16□□□□□ -0.3
CCM2-209ENST00000477605 LINC01600Q96MT4 127 aa13.16□□□□□ -0.3
CCM2-209ENST00000477605 C11orf72Q8NBR9 251 aa13.15□□□□□ -0.3
CCM2-209ENST00000477605 CARD19Q96LW7 228 aa13.15□□□□□ -0.3
CCM2-209ENST00000477605 LITAFQ99732 161 aa13.15□□□□□ -0.3
CCM2-209ENST00000477605 MAP6D1Q9H9H5 199 aa13.15□□□□□ -0.3
CCM2-209ENST00000477605 RS1O15537 224 aa13.14□□□□□ -0.31
CCM2-209ENST00000477605 MAPK1IP1LQ8NDC0 245 aa13.14□□□□□ -0.31
CCM2-209ENST00000477605 VSIG2Q96IQ7 327 aa13.14□□□□□ -0.31
CCM2-209ENST00000477605 CDIP1Q9H305 208 aa13.14□□□□□ -0.31
CCM2-209ENST00000477605 ZNF469Q96JG9 3925 aaPredicted RBP13.14□□□□□ -0.31
CCM2-209ENST00000477605 TRBV30A0A0K0K1B3 111 aa13.14□□□□□ -0.31
CCM2-209ENST00000477605 INSP01308 110 aa13.14□□□□□ -0.31
CCM2-209ENST00000477605 LINC01587Q99440 93 aa13.14□□□□□ -0.31
CCM2-209ENST00000477605 DEFB136Q30KP8 78 aa13.13□□□□□ -0.31
CCM2-209ENST00000477605 DYNLRB2Q8TF09 96 aa13.13□□□□□ -0.31
CCM2-209ENST00000477605 NDUFA12Q9UI09 145 aa13.13□□□□□ -0.31
CCM2-209ENST00000477605 ITPR3Q14573 2671 aa13.13□□□□□ -0.31
CCM2-209ENST00000477605 SLC25A20O43772 301 aa13.12□□□□□ -0.31
CCM2-209ENST00000477605 TIMM17BO60830 172 aa13.12□□□□□ -0.31
CCM2-209ENST00000477605 ATXN8Q156A1 80 aa13.12□□□□□ -0.31
CCM2-209ENST00000477605 DEFB114Q30KQ6 69 aa13.12□□□□□ -0.31
CCM2-209ENST00000477605 Q6ZSN1 163 aa13.12□□□□□ -0.31
CCM2-209ENST00000477605 C18orf65Q6ZTR6 163 aa13.12□□□□□ -0.31
CCM2-209ENST00000477605 VPS13CQ709C8 3753 aa13.12□□□□□ -0.31
CCM2-209ENST00000477605 TMEM262E9PQX1 116 aa13.12□□□□□ -0.31
CCM2-209ENST00000477605 TIRAPP58753 221 aa13.12□□□□□ -0.31
CCM2-209ENST00000477605 LRRC75A-AS1Q8N1F1 130 aa13.12□□□□□ -0.31
CCM2-209ENST00000477605 YAE1D1Q9NRH1 226 aa13.12□□□□□ -0.31
CCM2-209ENST00000477605 DEFB113Q30KQ7 82 aa13.11□□□□□ -0.31
CCM2-209ENST00000477605 CEMP1Q6PRD7 247 aaPredicted RBP13.11□□□□□ -0.31
CCM2-209ENST00000477605 MAP1AP78559 2803 aaPredicted RBP13.11□□□□□ -0.31
CCM2-209ENST00000477605 A0A1B0GV72 72 aa13.11□□□□□ -0.31
CCM2-209ENST00000477605 CIDEAO60543 219 aa13.11□□□□□ -0.31
CCM2-209ENST00000477605 MIAQ16674 131 aa13.11□□□□□ -0.31
CCM2-209ENST00000477605 ANKRD29Q8N6D5 301 aa13.11□□□□□ -0.31
CCM2-209ENST00000477605 TRAV25A0A0B4J276 109 aa13.1□□□□□ -0.31
CCM2-209ENST00000477605 ZFAND6Q6FIF0 208 aa13.1□□□□□ -0.31
CCM2-209ENST00000477605 IGLV5-45A0A087WSX0 123 aa13.09□□□□□ -0.31
CCM2-209ENST00000477605 TRAV8-3A0A0A6YYJ7 113 aa13.09□□□□□ -0.31
CCM2-209ENST00000477605 IFITM1P13164 125 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms