RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 DPM2O94777 84 aa4.81□□□□□ -1.64
LDB3-206ENST00000477489 IGKCP01834 107 aa4.81□□□□□ -1.64
LDB3-206ENST00000477489 GIG44P09565 113 aaPredicted RBP4.81□□□□□ -1.64
LDB3-206ENST00000477489 AZU1P20160 251 aa4.81□□□□□ -1.64
LDB3-206ENST00000477489 APOC4P55056 127 aa4.81□□□□□ -1.64
LDB3-206ENST00000477489 CTAG1AP78358 180 aa4.81□□□□□ -1.64
LDB3-206ENST00000477489 LCE5AQ5TCM9 118 aa4.81□□□□□ -1.64
LDB3-206ENST00000477489 SLC25A34Q6PIV7 304 aa4.81□□□□□ -1.64
LDB3-206ENST00000477489 NEXN-AS1Q8NBZ9 246 aa4.81□□□□□ -1.64
LDB3-206ENST00000477489 JPT2Q9H910 190 aa4.81□□□□□ -1.64
LDB3-206ENST00000477489 PKD1L1Q8TDX9 2849 aa4.81□□□□□ -1.64
LDB3-206ENST00000477489 NACAE9PAV3 2078 aa4.81□□□□□ -1.64
LDB3-206ENST00000477489 IGIPA6NJ69 53 aa4.8□□□□□ -1.64
LDB3-206ENST00000477489 COX8AP10176 69 aa4.8□□□□□ -1.64
LDB3-206ENST00000477489 HTN1P15515 57 aa4.8□□□□□ -1.64
LDB3-206ENST00000477489 HNRNPA3P51991 378 aaKnown RBP4.8□□□□□ -1.64
LDB3-206ENST00000477489 ANKRD39Q53RE8 183 aa4.8□□□□□ -1.64
LDB3-206ENST00000477489 LINC00612Q8N6U2 182 aa4.8□□□□□ -1.64
LDB3-206ENST00000477489 C20orf203Q8NBC4 194 aa4.8□□□□□ -1.64
LDB3-206ENST00000477489 OR4C5Q8NGB2 326 aa4.8□□□□□ -1.64
LDB3-206ENST00000477489 C2orf88Q9BSF0 95 aa4.8□□□□□ -1.64
LDB3-206ENST00000477489 TRGV1A0A0A0MS02 117 aa4.79□□□□□ -1.64
LDB3-206ENST00000477489 TRBV6-4A0A1B0GX49 114 aa4.79□□□□□ -1.64
LDB3-206ENST00000477489 A8MZ25 164 aa4.79□□□□□ -1.64
LDB3-206ENST00000477489 TSHBP01222 138 aa4.79□□□□□ -1.64
LDB3-206ENST00000477489 RPL36AP83881 106 aaKnown RBP4.79□□□□□ -1.64
LDB3-206ENST00000477489 PMVKQ15126 192 aa4.79□□□□□ -1.64
LDB3-206ENST00000477489 TMEM97Q5BJF2 176 aa4.79□□□□□ -1.64
LDB3-206ENST00000477489 DAZ4Q86SG3 579 aaKnown RBP4.79□□□□□ -1.64
LDB3-206ENST00000477489 ATOH7Q8N100 152 aa4.79□□□□□ -1.64
LDB3-206ENST00000477489 RPL36ALQ969Q0 106 aaKnown RBP4.79□□□□□ -1.64
LDB3-206ENST00000477489 TIMM21Q9BVV7 248 aa4.79□□□□□ -1.64
LDB3-206ENST00000477489 KRTAP9-3Q9BYQ3 159 aa4.79□□□□□ -1.64
LDB3-206ENST00000477489 DAZ3Q9NR90 486 aaKnown RBP4.79□□□□□ -1.64
LDB3-206ENST00000477489 SPANXA1Q9NS26 97 aa4.79□□□□□ -1.64
LDB3-206ENST00000477489 MRPL16Q9NX20 251 aaKnown RBP4.79□□□□□ -1.64
LDB3-206ENST00000477489 TP53TG1Q9Y2A0 90 aa4.79□□□□□ -1.64
LDB3-206ENST00000477489 TRBV7-3A0A075B6L6 115 aa4.78□□□□□ -1.64
LDB3-206ENST00000477489 TEX48A0A1B0GUV7 120 aa4.78□□□□□ -1.64
LDB3-206ENST00000477489 hDV102S1A0JD36 115 aa4.78□□□□□ -1.64
LDB3-206ENST00000477489 PLAC8L1A1L4L8 177 aa4.78□□□□□ -1.64
LDB3-206ENST00000477489 LYRM9A8MSI8 78 aa4.78□□□□□ -1.64
LDB3-206ENST00000477489 H0Y8G0 127 aa4.78□□□□□ -1.64
LDB3-206ENST00000477489 H7C423 109 aa4.78□□□□□ -1.64
LDB3-206ENST00000477489 K7EQD1 137 aa4.78□□□□□ -1.64
LDB3-206ENST00000477489 RPL35AP18077 110 aaKnown RBP4.78□□□□□ -1.64
LDB3-206ENST00000477489 C12orf54Q6X4T0 127 aa4.78□□□□□ -1.64
LDB3-206ENST00000477489 BOD1L2Q8IYS8 172 aa4.78□□□□□ -1.64
LDB3-206ENST00000477489 BAALCQ8WXS3 180 aa4.78□□□□□ -1.64
LDB3-206ENST00000477489 GTSF1LQ9H1H1 148 aa4.78□□□□□ -1.64
LDB3-206ENST00000477489 HHLA3Q9XRX5 114 aa4.78□□□□□ -1.64
LDB3-206ENST00000477489 CHTOPQ9Y3Y2 248 aaKnown RBP4.78□□□□□ -1.64
LDB3-206ENST00000477489 IGHV3OR16-12A0A075B7B8 117 aa4.77□□□□□ -1.65
LDB3-206ENST00000477489 HERVK_113P61574 105 aa4.77□□□□□ -1.65
LDB3-206ENST00000477489 COTL1Q14019 142 aa4.77□□□□□ -1.65
LDB3-206ENST00000477489 MRPL35Q9NZE8 188 aaKnown RBP4.77□□□□□ -1.65
LDB3-206ENST00000477489 HIGD1BQ9P298 99 aa4.77□□□□□ -1.65
LDB3-206ENST00000477489 DKK2Q9UBU2 259 aa4.77□□□□□ -1.65
LDB3-206ENST00000477489 CSDC2Q9Y534 153 aaKnown RBP4.77□□□□□ -1.65
LDB3-206ENST00000477489 NOTCH1P46531 2555 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 TRGV2A0A075B6R0 118 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 PRSS29PA6NIE9 313 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 P0DMU3 169 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 FAM231AP0DMU4 169 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 FAM231CP0DMU5 169 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 MIFP14174 115 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 UBE2D3P61077 147 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 UBE2D2P62837 147 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 MRPS36P82909 103 aaKnown RBP4.76□□□□□ -1.65
LDB3-206ENST00000477489 EGFEM1PQ0D2K5 195 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 MAJINQ3KP22 176 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 ZC2HC1BQ5TFG8 222 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 Q6ZTI0 123 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 NFE4Q86UQ8 179 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 C3orf56Q8N813 242 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 PRADC1Q9BSG0 188 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 SNHG12Q9BXW3 62 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 WFDC10AQ9H1F0 79 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 CST9LQ9H4G1 147 aa4.76□□□□□ -1.65
LDB3-206ENST00000477489 NOP10Q9NPE3 64 aaKnown RBP4.76□□□□□ -1.65
LDB3-206ENST00000477489 C11orf86A6NJI1 115 aa4.75□□□□□ -1.65
LDB3-206ENST00000477489 E9PLD3 99 aa4.75□□□□□ -1.65
LDB3-206ENST00000477489 FGF6P10767 208 aa4.75□□□□□ -1.65
LDB3-206ENST00000477489 SEC11AP67812 179 aa4.75□□□□□ -1.65
LDB3-206ENST00000477489 TAL2Q16559 108 aa4.75□□□□□ -1.65
LDB3-206ENST00000477489 COL5A1-AS1Q5SY13 56 aa4.75□□□□□ -1.65
LDB3-206ENST00000477489 NEGR1Q7Z3B1 354 aa4.75□□□□□ -1.65
LDB3-206ENST00000477489 ZNF479Q96JC4 524 aa4.75□□□□□ -1.65
LDB3-206ENST00000477489 AMELXQ99217 191 aa4.75□□□□□ -1.65
LDB3-206ENST00000477489 CHCHD7Q9BUK0 85 aa4.75□□□□□ -1.65
LDB3-206ENST00000477489 KRTAP17-1Q9BYP8 105 aa4.75□□□□□ -1.65
LDB3-206ENST00000477489 VCX2Q9H322 139 aa4.75□□□□□ -1.65
LDB3-206ENST00000477489 X6R8D5 127 aa4.75□□□□□ -1.65
LDB3-206ENST00000477489 MGAM2Q2M2H8 2515 aa4.74□□□□□ -1.65
LDB3-206ENST00000477489 IGLV4-3A0A075B6K6 122 aa4.74□□□□□ -1.65
LDB3-206ENST00000477489 IGHV3-73A0A0B4J1V6 119 aa4.74□□□□□ -1.65
LDB3-206ENST00000477489 TRGV4A0A0C4DH28 118 aa4.74□□□□□ -1.65
LDB3-206ENST00000477489 ZNF25P17030 456 aaPredicted RBP4.74□□□□□ -1.65
LDB3-206ENST00000477489 HSD52Q0P140 79 aa4.74□□□□□ -1.65
LDB3-206ENST00000477489 Q6ZSN1 163 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms