RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.74□□□□□ -1.33
COL6A3-210ENST00000473258 PRO0461Q9UI25 63 aa6.74□□□□□ -1.33
COL6A3-210ENST00000473258 NUP98P52948 1817 aa6.74□□□□□ -1.33
COL6A3-210ENST00000473258 QSER1Q2KHR3 1735 aa6.74□□□□□ -1.33
COL6A3-210ENST00000473258 SMCPP49901 116 aaPredicted RBP6.74□□□□□ -1.33
COL6A3-210ENST00000473258 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.74□□□□□ -1.33
COL6A3-210ENST00000473258 URB1-AS1Q96HZ7 61 aa6.74□□□□□ -1.33
COL6A3-210ENST00000473258 GYPEP15421 78 aa6.73□□□□□ -1.33
COL6A3-210ENST00000473258 RBBP6Q7Z6E9 1792 aaKnown RBP6.73□□□□□ -1.33
COL6A3-210ENST00000473258 USF3Q68DE3 2245 aa6.73□□□□□ -1.33
COL6A3-210ENST00000473258 MYOFQ9NZM1 2061 aa6.73□□□□□ -1.33
COL6A3-210ENST00000473258 GATA4P43694 442 aa6.73□□□□□ -1.33
COL6A3-210ENST00000473258 BRD3OSQ6XYD6 125 aa6.72□□□□□ -1.33
COL6A3-210ENST00000473258 SCN10AQ9Y5Y9 1956 aa6.72□□□□□ -1.33
COL6A3-210ENST00000473258 ECM29Q5VYK3 1845 aa6.72□□□□□ -1.33
COL6A3-210ENST00000473258 TNFRSF13BO14836 293 aaPredicted RBP6.72□□□□□ -1.33
COL6A3-210ENST00000473258 LINC01547P58512 204 aaPredicted RBP6.72□□□□□ -1.33
COL6A3-210ENST00000473258 ZFAND2AQ8N6M9 145 aa6.72□□□□□ -1.33
COL6A3-210ENST00000473258 CYP4F30PQ9H0H9 118 aa6.72□□□□□ -1.33
COL6A3-210ENST00000473258 CGB3P0DN86 165 aa6.72□□□□□ -1.33
COL6A3-210ENST00000473258 C11orf53Q8IXP5 236 aa6.72□□□□□ -1.33
COL6A3-210ENST00000473258 CTSGP08311 255 aa6.72□□□□□ -1.33
COL6A3-210ENST00000473258 NHSQ6T4R5 1651 aa6.72□□□□□ -1.33
COL6A3-210ENST00000473258 ZNF462Q96JM2 2506 aa6.72□□□□□ -1.33
COL6A3-210ENST00000473258 IGLV3-19P01714 112 aa6.71□□□□□ -1.33
COL6A3-210ENST00000473258 ATP11AUNQ6ZP68 121 aa6.71□□□□□ -1.33
COL6A3-210ENST00000473258 C2orf48Q96LS8 159 aa6.71□□□□□ -1.33
COL6A3-210ENST00000473258 STRCP1A6NGW2 1772 aa6.71□□□□□ -1.33
COL6A3-210ENST00000473258 PINLYPA6NC86 204 aa6.71□□□□□ -1.33
COL6A3-210ENST00000473258 ATP1A1-AS1Q5TC04 95 aa6.71□□□□□ -1.33
COL6A3-210ENST00000473258 KIAA1551Q9HCM1 1747 aa6.71□□□□□ -1.33
COL6A3-210ENST00000473258 BCORQ6W2J9 1755 aa6.71□□□□□ -1.34
COL6A3-210ENST00000473258 PATE3B3GLJ2 98 aa6.71□□□□□ -1.34
COL6A3-210ENST00000473258 H0Y9P7 68 aa6.71□□□□□ -1.34
COL6A3-210ENST00000473258 PCOTHQ58A44 107 aa6.71□□□□□ -1.34
COL6A3-210ENST00000473258 PATJQ8NI35 1801 aa6.7□□□□□ -1.34
COL6A3-210ENST00000473258 LOC285556D6RIA3 1793 aa6.7□□□□□ -1.34
COL6A3-210ENST00000473258 NHSL1Q5SYE7 1610 aa6.7□□□□□ -1.34
COL6A3-210ENST00000473258 SAP25Q8TEE9 199 aa6.7□□□□□ -1.34
COL6A3-210ENST00000473258 LINC00467Q9BRT7 94 aa6.7□□□□□ -1.34
COL6A3-210ENST00000473258 TNRC6CQ9HCJ0 1690 aaKnown RBP6.7□□□□□ -1.34
COL6A3-210ENST00000473258 C2CD3Q4AC94 2353 aa6.7□□□□□ -1.34
COL6A3-210ENST00000473258 IGLV11-55A0A075B6I3 123 aa6.7□□□□□ -1.34
COL6A3-210ENST00000473258 Q8N9W7 124 aa6.7□□□□□ -1.34
COL6A3-210ENST00000473258 PCNX1Q96RV3 2341 aa6.7□□□□□ -1.34
COL6A3-210ENST00000473258 MARF1Q9Y4F3 1742 aaKnown RBP6.7□□□□□ -1.34
COL6A3-210ENST00000473258 ZNF236Q9UL36 1845 aa6.7□□□□□ -1.34
COL6A3-210ENST00000473258 NHLRC4P0CG21 123 aaPredicted RBP6.7□□□□□ -1.34
COL6A3-210ENST00000473258 FHL2Q14192 279 aa6.7□□□□□ -1.34
COL6A3-210ENST00000473258 A8MUN3 132 aa6.69□□□□□ -1.34
COL6A3-210ENST00000473258 ZNF295-AS1Q8N0V1 137 aa6.69□□□□□ -1.34
COL6A3-210ENST00000473258 Q8N814 137 aa6.69□□□□□ -1.34
COL6A3-210ENST00000473258 A0A1B0GU69 56 aa6.69□□□□□ -1.34
COL6A3-210ENST00000473258 H3BUA1 57 aa6.69□□□□□ -1.34
COL6A3-210ENST00000473258 IGF1P05019 195 aa6.69□□□□□ -1.34
COL6A3-210ENST00000473258 LINC00474Q9P2X8 69 aa6.69□□□□□ -1.34
COL6A3-210ENST00000473258 A0A096LNI7 61 aa6.68□□□□□ -1.34
COL6A3-210ENST00000473258 P0C879 139 aa6.68□□□□□ -1.34
COL6A3-210ENST00000473258 C16orf74Q96GX8 76 aa6.68□□□□□ -1.34
COL6A3-210ENST00000473258 TANC2Q9HCD6 1990 aa6.68□□□□□ -1.34
COL6A3-210ENST00000473258 TRBV6-8A0A0A6YYG3 113 aa6.68□□□□□ -1.34
COL6A3-210ENST00000473258 CRIP1P50238 77 aa6.68□□□□□ -1.34
COL6A3-210ENST00000473258 VWCEQ96DN2 955 aa6.68□□□□□ -1.34
COL6A3-210ENST00000473258 B3GALT5-AS1P59052 145 aa6.67□□□□□ -1.34
COL6A3-210ENST00000473258 C9orf116Q5BN46 136 aaPredicted RBP6.67□□□□□ -1.34
COL6A3-210ENST00000473258 DCANP1Q8TF63 244 aa6.67□□□□□ -1.34
COL6A3-210ENST00000473258 IGKV1D-37A0A075B6S9 117 aa6.67□□□□□ -1.34
COL6A3-210ENST00000473258 Q0VFX4 171 aa6.67□□□□□ -1.34
COL6A3-210ENST00000473258 GLI3P10071 1580 aa6.67□□□□□ -1.34
COL6A3-210ENST00000473258 A0A087WYN8 130 aa6.67□□□□□ -1.34
COL6A3-210ENST00000473258 XAGE1AQ9HD64 81 aa6.67□□□□□ -1.34
COL6A3-210ENST00000473258 PCDH15Q96QU1 1955 aa6.67□□□□□ -1.34
COL6A3-210ENST00000473258 IGLV2-14P01704 120 aa6.67□□□□□ -1.34
COL6A3-210ENST00000473258 Q6ZSV7 163 aa6.67□□□□□ -1.34
COL6A3-210ENST00000473258 DHRS4-AS1Q9P1J3 65 aa6.67□□□□□ -1.34
COL6A3-210ENST00000473258 NBASA2RRP1 2371 aa6.66□□□□□ -1.34
COL6A3-210ENST00000473258 SIPA1L1O43166 1804 aa6.66□□□□□ -1.34
COL6A3-210ENST00000473258 CCL18P55774 89 aa6.66□□□□□ -1.34
COL6A3-210ENST00000473258 ABCA3Q99758 1704 aa6.66□□□□□ -1.34
COL6A3-210ENST00000473258 Q6ZSR3 168 aa6.66□□□□□ -1.34
COL6A3-210ENST00000473258 Q9UF83 564 aa6.66□□□□□ -1.34
COL6A3-210ENST00000473258 M0QY20 66 aa6.66□□□□□ -1.34
COL6A3-210ENST00000473258 SPRNQ5BIV9 151 aa6.66□□□□□ -1.34
COL6A3-210ENST00000473258 HCFC1P51610 2035 aa6.65□□□□□ -1.34
COL6A3-210ENST00000473258 B4DSR2 109 aa6.65□□□□□ -1.35
COL6A3-210ENST00000473258 TMEM105Q8N8V8 129 aa6.65□□□□□ -1.35
COL6A3-210ENST00000473258 KLK12Q9UKR0 248 aa6.65□□□□□ -1.35
COL6A3-210ENST00000473258 ZNF843Q8N446 348 aa6.65□□□□□ -1.35
COL6A3-210ENST00000473258 LINC00575Q6W349 94 aa6.64□□□□□ -1.35
COL6A3-210ENST00000473258 Q96MF0 132 aa6.64□□□□□ -1.35
COL6A3-210ENST00000473258 DKK4Q9UBT3 224 aa6.64□□□□□ -1.35
COL6A3-210ENST00000473258 IGHV7-81A0A0B4J1V7 117 aa6.64□□□□□ -1.35
COL6A3-210ENST00000473258 TRBV6-4A0A1B0GX49 114 aa6.64□□□□□ -1.35
COL6A3-210ENST00000473258 CCL24O00175 119 aa6.64□□□□□ -1.35
COL6A3-210ENST00000473258 POLR2KP53803 58 aaKnown RBP6.64□□□□□ -1.35
COL6A3-210ENST00000473258 C10orf25Q5T742 122 aa6.64□□□□□ -1.35
COL6A3-210ENST00000473258 RGPD8O14715 1765 aaPredicted RBP6.64□□□□□ -1.35
COL6A3-210ENST00000473258 RGPD5Q99666 1765 aa6.64□□□□□ -1.35
COL6A3-210ENST00000473258 PARP14Q460N5 1801 aa6.64□□□□□ -1.35
COL6A3-210ENST00000473258 C1orf64Q8NEQ6 169 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms