RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 IGHV3-16A0A0C4DH30 117 aa9.2□□□□□ -0.94
HDAC4-208ENST00000463007 IGHV3-33P01772 117 aa9.2□□□□□ -0.94
HDAC4-208ENST00000463007 PAPPA-AS1Q5QFB9 102 aa9.2□□□□□ -0.94
HDAC4-208ENST00000463007 SYNJ2BPP57105 145 aa9.19□□□□□ -0.94
HDAC4-208ENST00000463007 TTC32Q5I0X7 151 aa9.19□□□□□ -0.94
HDAC4-208ENST00000463007 ZNF22P17026 224 aaPredicted RBP9.18□□□□□ -0.94
HDAC4-208ENST00000463007 APRG1Q8IVJ8 170 aa9.18□□□□□ -0.94
HDAC4-208ENST00000463007 B4DSR2 109 aa9.18□□□□□ -0.94
HDAC4-208ENST00000463007 ID1P41134 155 aa9.18□□□□□ -0.94
HDAC4-208ENST00000463007 GAGE2BQ13066 116 aa9.18□□□□□ -0.94
HDAC4-208ENST00000463007 GAGE2EQ4V326 116 aa9.18□□□□□ -0.94
HDAC4-208ENST00000463007 NRGNQ92686 78 aa9.18□□□□□ -0.94
HDAC4-208ENST00000463007 GAGE2DQ9UEU5 116 aa9.18□□□□□ -0.94
HDAC4-208ENST00000463007 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.18□□□□□ -0.94
HDAC4-208ENST00000463007 IGKV2-29A2NJV5 120 aaPredicted RBP9.18□□□□□ -0.94
HDAC4-208ENST00000463007 M0QY20 66 aa9.18□□□□□ -0.94
HDAC4-208ENST00000463007 RHODO00212 210 aa9.18□□□□□ -0.94
HDAC4-208ENST00000463007 TMEM141Q96I45 108 aa9.18□□□□□ -0.94
HDAC4-208ENST00000463007 AMELXQ99217 191 aa9.18□□□□□ -0.94
HDAC4-208ENST00000463007 LINC01619G3V211 115 aa9.17□□□□□ -0.94
HDAC4-208ENST00000463007 ATP6V0E2Q8NHE4 81 aa9.17□□□□□ -0.94
HDAC4-208ENST00000463007 TIMM21Q9BVV7 248 aa9.17□□□□□ -0.94
HDAC4-208ENST00000463007 TRIAP1O43715 76 aa9.17□□□□□ -0.94
HDAC4-208ENST00000463007 IGHV3-30-3P0DP02 117 aa9.17□□□□□ -0.94
HDAC4-208ENST00000463007 DSCR9P59020 149 aa9.17□□□□□ -0.94
HDAC4-208ENST00000463007 ADAMTSL4-AS1Q5T5F5 129 aa9.17□□□□□ -0.94
HDAC4-208ENST00000463007 NBEAL2Q6ZNJ1 2754 aa9.16□□□□□ -0.94
HDAC4-208ENST00000463007 IGHV3OR16-12A0A075B7B8 117 aa9.16□□□□□ -0.94
HDAC4-208ENST00000463007 FSHBP01225 129 aa9.16□□□□□ -0.94
HDAC4-208ENST00000463007 SMIM20Q8N5G0 67 aa9.16□□□□□ -0.94
HDAC4-208ENST00000463007 TIMM17AQ99595 171 aa9.16□□□□□ -0.94
HDAC4-208ENST00000463007 ZNF469Q96JG9 3925 aaPredicted RBP9.16□□□□□ -0.94
HDAC4-208ENST00000463007 C2orf82Q6UX34 121 aa9.16□□□□□ -0.94
HDAC4-208ENST00000463007 IGHV4OR15-8A0A075B7B6 117 aa9.16□□□□□ -0.94
HDAC4-208ENST00000463007 A0A087WW49 117 aa9.16□□□□□ -0.94
HDAC4-208ENST00000463007 A0A0J9YXY3 114 aa9.16□□□□□ -0.94
HDAC4-208ENST00000463007 TMEM223A0PJW6 202 aa9.16□□□□□ -0.94
HDAC4-208ENST00000463007 KLLNB2CW77 178 aa9.16□□□□□ -0.94
HDAC4-208ENST00000463007 DEFB136Q30KP8 78 aa9.16□□□□□ -0.94
HDAC4-208ENST00000463007 LINC01620Q4KN68 170 aa9.16□□□□□ -0.94
HDAC4-208ENST00000463007 TMEM263Q8WUH6 116 aaKnown RBP9.16□□□□□ -0.94
HDAC4-208ENST00000463007 AKAP9Q99996 3911 aa9.15□□□□□ -0.94
HDAC4-208ENST00000463007 CR1P17927 2039 aa9.15□□□□□ -0.94
HDAC4-208ENST00000463007 IGLV4-3A0A075B6K6 122 aa9.15□□□□□ -0.94
HDAC4-208ENST00000463007 TRBV27A0A0K0K1C4 114 aa9.15□□□□□ -0.94
HDAC4-208ENST00000463007 PSMB8P28062 276 aa9.15□□□□□ -0.94
HDAC4-208ENST00000463007 NOTCH2Q04721 2471 aa9.15□□□□□ -0.94
HDAC4-208ENST00000463007 KHDC1LQ5JSQ8 128 aa9.15□□□□□ -0.95
HDAC4-208ENST00000463007 C20orf203Q8NBC4 194 aa9.15□□□□□ -0.95
HDAC4-208ENST00000463007 DCANP1Q8TF63 244 aa9.15□□□□□ -0.95
HDAC4-208ENST00000463007 BBC3Q96PG8 261 aaPredicted RBP9.15□□□□□ -0.95
HDAC4-208ENST00000463007 LEPROTO15243 131 aa9.14□□□□□ -0.95
HDAC4-208ENST00000463007 SNRPD3P62318 126 aaKnown RBP9.14□□□□□ -0.95
HDAC4-208ENST00000463007 C15orf53Q8NAA6 179 aa9.14□□□□□ -0.95
HDAC4-208ENST00000463007 NDUFA12Q9UI09 145 aa9.14□□□□□ -0.95
HDAC4-208ENST00000463007 ACANP16112 2415 aa9.14□□□□□ -0.95
HDAC4-208ENST00000463007 IGHV1OR15-1A0A075B7D0 117 aa9.14□□□□□ -0.95
HDAC4-208ENST00000463007 TRAV8-4A0A0B4J246 113 aa9.14□□□□□ -0.95
HDAC4-208ENST00000463007 CCDC179H3BU77 68 aa9.14□□□□□ -0.95
HDAC4-208ENST00000463007 I3L3M4 83 aa9.14□□□□□ -0.95
HDAC4-208ENST00000463007 TRBV7-9A0A0J9YWB2 115 aa9.13□□□□□ -0.95
HDAC4-208ENST00000463007 IGHV4-59P01825 116 aa9.13□□□□□ -0.95
HDAC4-208ENST00000463007 ATXN8Q156A1 80 aa9.13□□□□□ -0.95
HDAC4-208ENST00000463007 TNFRSF18Q9Y5U5 241 aa9.13□□□□□ -0.95
HDAC4-208ENST00000463007 TMEM262E9PQX1 116 aa9.13□□□□□ -0.95
HDAC4-208ENST00000463007 K7EMT4 169 aa9.12□□□□□ -0.95
HDAC4-208ENST00000463007 DEFB112Q30KQ8 113 aa9.12□□□□□ -0.95
HDAC4-208ENST00000463007 LINC01356Q8N9X3 169 aa9.12□□□□□ -0.95
HDAC4-208ENST00000463007 M0R2P5 195 aa9.12□□□□□ -0.95
HDAC4-208ENST00000463007 LGALS9O00182 355 aa9.12□□□□□ -0.95
HDAC4-208ENST00000463007 J3QLI3 93 aa9.11□□□□□ -0.95
HDAC4-208ENST00000463007 DGAT2L7PQ6IED9 249 aa9.11□□□□□ -0.95
HDAC4-208ENST00000463007 A0A0J9YX75 114 aa9.11□□□□□ -0.95
HDAC4-208ENST00000463007 TMEM89A2RUT3 159 aa9.11□□□□□ -0.95
HDAC4-208ENST00000463007 H3BMM0 161 aa9.11□□□□□ -0.95
HDAC4-208ENST00000463007 PRB1P04280 392 aa9.11□□□□□ -0.95
HDAC4-208ENST00000463007 GAGE5Q13069 117 aa9.11□□□□□ -0.95
HDAC4-208ENST00000463007 GAGE6Q13070 117 aa9.11□□□□□ -0.95
HDAC4-208ENST00000463007 UBE2WQ96B02 151 aa9.11□□□□□ -0.95
HDAC4-208ENST00000463007 NBPF19A0A087WUL8 3843 aa9.1□□□□□ -0.95
HDAC4-208ENST00000463007 NDUFA7O95182 113 aa9.1□□□□□ -0.95
HDAC4-208ENST00000463007 MED14OSP0DP75 135 aa9.1□□□□□ -0.95
HDAC4-208ENST00000463007 DEFB131AP59861 70 aa9.1□□□□□ -0.95
HDAC4-208ENST00000463007 Q6ZSN1 163 aa9.1□□□□□ -0.95
HDAC4-208ENST00000463007 IGKV3OR2-268A0A0C4DH90 116 aa9.1□□□□□ -0.95
HDAC4-208ENST00000463007 RPL13AP40429 203 aaKnown RBP9.1□□□□□ -0.95
HDAC4-208ENST00000463007 ICOSQ9Y6W8 199 aa9.1□□□□□ -0.95
HDAC4-208ENST00000463007 NXPH4O95158 308 aa9.1□□□□□ -0.95
HDAC4-208ENST00000463007 NDUFV3P56181 108 aaKnown RBP9.1□□□□□ -0.95
HDAC4-208ENST00000463007 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.09□□□□□ -0.95
HDAC4-208ENST00000463007 IGHV3-53P01767 116 aa9.09□□□□□ -0.95
HDAC4-208ENST00000463007 NHLRC4P0CG21 123 aaPredicted RBP9.09□□□□□ -0.95
HDAC4-208ENST00000463007 RBMY1A1P0DJD3 496 aaKnown RBP9.09□□□□□ -0.95
HDAC4-208ENST00000463007 RBMY1CP0DJD4 496 aa9.09□□□□□ -0.95
HDAC4-208ENST00000463007 RBMY1FQ15415 496 aaKnown RBP9.09□□□□□ -0.95
HDAC4-208ENST00000463007 POM121L12Q8N7R1 296 aa9.09□□□□□ -0.95
HDAC4-208ENST00000463007 CITED1Q99966 193 aa9.09□□□□□ -0.95
HDAC4-208ENST00000463007 COX6CP09669 75 aa9.08□□□□□ -0.96
HDAC4-208ENST00000463007 C11orf44Q8N8P7 122 aa9.08□□□□□ -0.96
HDAC4-208ENST00000463007 C9orf85Q96MD7 179 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms