RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 GTSF1Q8WW33 167 aa12.3□□□□□ -0.44
VARS-220ENST00000461874 CIRBP-AS1Q8TBR5 109 aa12.29□□□□□ -0.44
VARS-220ENST00000461874 IGLV4-60A0A075B6I1 120 aa12.28□□□□□ -0.44
VARS-220ENST00000461874 DGAT2L7PQ6IED9 249 aa12.28□□□□□ -0.44
VARS-220ENST00000461874 GATD1Q8NB37 220 aa12.28□□□□□ -0.44
VARS-220ENST00000461874 DEFB104AQ8WTQ1 72 aa12.28□□□□□ -0.44
VARS-220ENST00000461874 TRAV26-2A0A0B4J265 109 aa12.27□□□□□ -0.45
VARS-220ENST00000461874 COTL1Q14019 142 aa12.27□□□□□ -0.45
VARS-220ENST00000461874 GFRA4Q9GZZ7 299 aa12.27□□□□□ -0.45
VARS-220ENST00000461874 IGLV10-54A0A075B6I4 117 aa12.26□□□□□ -0.45
VARS-220ENST00000461874 TRAV8-4A0A0B4J246 113 aa12.26□□□□□ -0.45
VARS-220ENST00000461874 GATCO43716 136 aaKnown RBP12.26□□□□□ -0.45
VARS-220ENST00000461874 AMTP48728 403 aa12.26□□□□□ -0.45
VARS-220ENST00000461874 FAM231DQ6ZW35 169 aa12.26□□□□□ -0.45
VARS-220ENST00000461874 UBE2L6O14933 153 aa12.25□□□□□ -0.45
VARS-220ENST00000461874 FOXA3P55318 350 aaPredicted RBP12.25□□□□□ -0.45
VARS-220ENST00000461874 SMIM15Q7Z3B0 74 aa12.25□□□□□ -0.45
VARS-220ENST00000461874 A8MWL6 223 aa12.24□□□□□ -0.45
VARS-220ENST00000461874 CEBPGP53567 150 aa12.24□□□□□ -0.45
VARS-220ENST00000461874 C9orf163Q8N9P6 203 aa12.24□□□□□ -0.45
VARS-220ENST00000461874 CLRN3Q8NCR9 226 aa12.24□□□□□ -0.45
VARS-220ENST00000461874 CT83Q5H943 113 aa12.23□□□□□ -0.45
VARS-220ENST00000461874 RPL39LQ96EH5 51 aaKnown RBP12.23□□□□□ -0.45
VARS-220ENST00000461874 NDUFS6O75380 124 aaKnown RBP12.22□□□□□ -0.45
VARS-220ENST00000461874 KRTAP10-4P60372 401 aaPredicted RBP12.22□□□□□ -0.45
VARS-220ENST00000461874 TEX261Q6UWH6 196 aa12.22□□□□□ -0.45
VARS-220ENST00000461874 EIF5A2Q9GZV4 153 aaKnown RBP12.22□□□□□ -0.45
VARS-220ENST00000461874 SMIM7Q9BQ49 75 aa12.21□□□□□ -0.45
VARS-220ENST00000461874 NCR2O95944 276 aa12.2□□□□□ -0.46
VARS-220ENST00000461874 LINC01551Q86U37 167 aa12.2□□□□□ -0.46
VARS-220ENST00000461874 J3QL48 77 aa12.19□□□□□ -0.46
VARS-220ENST00000461874 CNBPP62633 177 aaKnown RBP12.19□□□□□ -0.46
VARS-220ENST00000461874 SDIM1Q6ZPB5 146 aa12.19□□□□□ -0.46
VARS-220ENST00000461874 FAM210AQ96ND0 272 aa12.19□□□□□ -0.46
VARS-220ENST00000461874 hDV102S1A0JD36 115 aa12.18□□□□□ -0.46
VARS-220ENST00000461874 SDHAF1A6NFY7 115 aa12.18□□□□□ -0.46
VARS-220ENST00000461874 TSKUQ8WUA8 353 aa12.18□□□□□ -0.46
VARS-220ENST00000461874 ZNF727A8MUV8 499 aa12.17□□□□□ -0.46
VARS-220ENST00000461874 KRTAP29-1A8MX34 341 aaPredicted RBP12.17□□□□□ -0.46
VARS-220ENST00000461874 H7C423 109 aa12.17□□□□□ -0.46
VARS-220ENST00000461874 APCSP02743 223 aa12.17□□□□□ -0.46
VARS-220ENST00000461874 SRP19P09132 144 aaKnown RBP12.17□□□□□ -0.46
VARS-220ENST00000461874 BORCS7Q96B45 105 aa12.17□□□□□ -0.46
VARS-220ENST00000461874 OSTCQ9NRP0 149 aa12.17□□□□□ -0.46
VARS-220ENST00000461874 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.17□□□□□ -0.46
VARS-220ENST00000461874 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.16□□□□□ -0.46
VARS-220ENST00000461874 TRBV6-5A0A0K0K1A5 114 aa12.16□□□□□ -0.46
VARS-220ENST00000461874 IGKV2-29A2NJV5 120 aaPredicted RBP12.16□□□□□ -0.46
VARS-220ENST00000461874 HIGD1CA8MV81 97 aa12.16□□□□□ -0.46
VARS-220ENST00000461874 AMMECR1LQ6DCA0 310 aa12.16□□□□□ -0.46
VARS-220ENST00000461874 AP5S1Q9NUS5 200 aa12.16□□□□□ -0.46
VARS-220ENST00000461874 IGKV3OR2-268A0A0C4DH90 116 aa12.15□□□□□ -0.46
VARS-220ENST00000461874 A0A1B0GUT8 65 aa12.15□□□□□ -0.46
VARS-220ENST00000461874 FAM231BA6NCW3 169 aa12.15□□□□□ -0.46
VARS-220ENST00000461874 GAGE12HA6NDE8 117 aa12.15□□□□□ -0.46
VARS-220ENST00000461874 PANO1I0J062 215 aa12.15□□□□□ -0.46
VARS-220ENST00000461874 I3L3M4 83 aa12.15□□□□□ -0.46
VARS-220ENST00000461874 GAS8-AS1O95177 125 aa12.15□□□□□ -0.46
VARS-220ENST00000461874 SLPIP03973 132 aa12.15□□□□□ -0.46
VARS-220ENST00000461874 RNASEKQ6P5S7 137 aaKnown RBP12.15□□□□□ -0.46
VARS-220ENST00000461874 A0A1B0GVG6 124 aa12.14□□□□□ -0.47
VARS-220ENST00000461874 FGF6P10767 208 aa12.14□□□□□ -0.47
VARS-220ENST00000461874 PMCHP20382 165 aa12.14□□□□□ -0.47
VARS-220ENST00000461874 TMEM191AQ9H0A3 160 aa12.14□□□□□ -0.47
VARS-220ENST00000461874 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.13□□□□□ -0.47
VARS-220ENST00000461874 CFAP161Q6P656 301 aa12.13□□□□□ -0.47
VARS-220ENST00000461874 C15orf56Q8N910 161 aa12.13□□□□□ -0.47
VARS-220ENST00000461874 RNF185Q96GF1 192 aa12.13□□□□□ -0.47
VARS-220ENST00000461874 ST20Q9HBF5 79 aa12.13□□□□□ -0.47
VARS-220ENST00000461874 IGHV3-64A0A075B6Q5 118 aa12.12□□□□□ -0.47
VARS-220ENST00000461874 RAB4AP20338 218 aa12.12□□□□□ -0.47
VARS-220ENST00000461874 RPL37AP61513 92 aaKnown RBP12.12□□□□□ -0.47
VARS-220ENST00000461874 CIRBPQ14011 172 aaKnown RBP12.12□□□□□ -0.47
VARS-220ENST00000461874 CHCHD10Q8WYQ3 142 aaPredicted RBP12.12□□□□□ -0.47
VARS-220ENST00000461874 V9GYV3 84 aa12.12□□□□□ -0.47
VARS-220ENST00000461874 LRP1Q07954 4544 aaKnown RBP12.11□□□□□ -0.47
VARS-220ENST00000461874 TSHBP01222 138 aa12.11□□□□□ -0.47
VARS-220ENST00000461874 ESDP10768 282 aa12.11□□□□□ -0.47
VARS-220ENST00000461874 ZNF25P17030 456 aaPredicted RBP12.11□□□□□ -0.47
VARS-220ENST00000461874 RPS10P46783 165 aaKnown RBP12.1□□□□□ -0.47
VARS-220ENST00000461874 POLR2KP53803 58 aaKnown RBP12.1□□□□□ -0.47
VARS-220ENST00000461874 TMEM241Q24JQ0 296 aa12.1□□□□□ -0.47
VARS-220ENST00000461874 FAM74A3Q4VXF1 159 aa12.1□□□□□ -0.47
VARS-220ENST00000461874 ISOC2Q96AB3 205 aa12.1□□□□□ -0.47
VARS-220ENST00000461874 MRAP2Q96G30 205 aa12.1□□□□□ -0.47
VARS-220ENST00000461874 TMEM242Q9NWH2 141 aa12.1□□□□□ -0.47
VARS-220ENST00000461874 AMN1Q8IY45 258 aa12.09□□□□□ -0.47
VARS-220ENST00000461874 NUP35Q8NFH5 326 aa12.09□□□□□ -0.47
VARS-220ENST00000461874 OR5A1Q8NGJ0 315 aa12.09□□□□□ -0.47
VARS-220ENST00000461874 TMEM101Q96IK0 257 aa12.09□□□□□ -0.47
VARS-220ENST00000461874 TRBV27A0A0K0K1C4 114 aa12.08□□□□□ -0.48
VARS-220ENST00000461874 RIGQ13278 110 aa12.08□□□□□ -0.48
VARS-220ENST00000461874 BTF3L4Q96K17 158 aa12.08□□□□□ -0.48
VARS-220ENST00000461874 PKHD1L1Q86WI1 4243 aa12.07□□□□□ -0.48
VARS-220ENST00000461874 C9JQL5 133 aa12.07□□□□□ -0.48
VARS-220ENST00000461874 RPL23P62829 140 aaKnown RBP12.07□□□□□ -0.48
VARS-220ENST00000461874 FOXI1Q12951 378 aa12.07□□□□□ -0.48
VARS-220ENST00000461874 HIGD2BQ4VC39 106 aa12.07□□□□□ -0.48
VARS-220ENST00000461874 OXTP01178 125 aa12.06□□□□□ -0.48
VARS-220ENST00000461874 CHTF8P0CG12 524 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms