RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SFT2D1Q8WV19 159 aa4.74□□□□□ -1.65
USP54-208ENST00000461520 MBD3L1Q8WWY6 194 aa4.74□□□□□ -1.65
USP54-208ENST00000461520 UBE2WQ96B02 151 aa4.74□□□□□ -1.65
USP54-208ENST00000461520 TRBV6-8A0A0A6YYG3 113 aa4.73□□□□□ -1.65
USP54-208ENST00000461520 HMSDA8MTL9 139 aa4.73□□□□□ -1.65
USP54-208ENST00000461520 KRTAP9-6A8MVA2 160 aa4.73□□□□□ -1.65
USP54-208ENST00000461520 SNAI2O43623 268 aa4.73□□□□□ -1.65
USP54-208ENST00000461520 PFDN1O60925 122 aa4.73□□□□□ -1.65
USP54-208ENST00000461520 PRR27Q6MZM9 219 aa4.73□□□□□ -1.65
USP54-208ENST00000461520 BAGE2Q86Y30 109 aa4.73□□□□□ -1.65
USP54-208ENST00000461520 KRTAP7-1Q8IUC3 87 aa4.73□□□□□ -1.65
USP54-208ENST00000461520 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.73□□□□□ -1.65
USP54-208ENST00000461520 FAM213BQ8TBF2 198 aa4.73□□□□□ -1.65
USP54-208ENST00000461520 DNAJC30Q96LL9 226 aa4.73□□□□□ -1.65
USP54-208ENST00000461520 ZNF471Q9BX82 626 aaPredicted RBP4.73□□□□□ -1.65
USP54-208ENST00000461520 A0A0D9SG52 128 aa4.72□□□□□ -1.65
USP54-208ENST00000461520 TMEM262E9PQX1 116 aa4.72□□□□□ -1.65
USP54-208ENST00000461520 CRPP02741 224 aa4.72□□□□□ -1.65
USP54-208ENST00000461520 OR5AL1P0C617 328 aa4.72□□□□□ -1.65
USP54-208ENST00000461520 PKIAP61925 76 aa4.72□□□□□ -1.65
USP54-208ENST00000461520 EIF5AP63241 154 aaKnown RBP4.72□□□□□ -1.65
USP54-208ENST00000461520 RPL19P84098 196 aaKnown RBP4.72□□□□□ -1.65
USP54-208ENST00000461520 ZNF56Q15929 161 aa4.72□□□□□ -1.65
USP54-208ENST00000461520 TMEM97Q5BJF2 176 aa4.72□□□□□ -1.65
USP54-208ENST00000461520 SPANXN1Q5VSR9 72 aa4.72□□□□□ -1.65
USP54-208ENST00000461520 TMUB2Q71RG4 321 aa4.72□□□□□ -1.65
USP54-208ENST00000461520 SCXQ7RTU7 201 aa4.72□□□□□ -1.65
USP54-208ENST00000461520 OR10AG1Q8NH19 301 aa4.72□□□□□ -1.65
USP54-208ENST00000461520 DEFB104AQ8WTQ1 72 aa4.72□□□□□ -1.65
USP54-208ENST00000461520 LITAFQ99732 161 aa4.72□□□□□ -1.65
USP54-208ENST00000461520 A0A1B0GV50 99 aa4.71□□□□□ -1.66
USP54-208ENST00000461520 KANTRA0A1W2PQU2 76 aa4.71□□□□□ -1.66
USP54-208ENST00000461520 GAGE10A6NGK3 116 aa4.71□□□□□ -1.66
USP54-208ENST00000461520 BCL2L11O43521 198 aa4.71□□□□□ -1.66
USP54-208ENST00000461520 SMIM17P0DL12 118 aa4.71□□□□□ -1.66
USP54-208ENST00000461520 LINC01620Q4KN68 170 aa4.71□□□□□ -1.66
USP54-208ENST00000461520 ENHOQ6UWT2 76 aa4.71□□□□□ -1.66
USP54-208ENST00000461520 C15orf54Q8N8G6 183 aa4.71□□□□□ -1.66
USP54-208ENST00000461520 CHAC1Q9BUX1 264 aa4.71□□□□□ -1.66
USP54-208ENST00000461520 VAX2Q9UIW0 290 aa4.71□□□□□ -1.66
USP54-208ENST00000461520 LRP1Q07954 4544 aaKnown RBP4.71□□□□□ -1.66
USP54-208ENST00000461520 ANGP03950 147 aaKnown RBP4.7□□□□□ -1.66
USP54-208ENST00000461520 RPL35P42766 123 aaKnown RBP4.7□□□□□ -1.66
USP54-208ENST00000461520 MIAQ16674 131 aa4.7□□□□□ -1.66
USP54-208ENST00000461520 MPV17L2Q567V2 206 aa4.7□□□□□ -1.66
USP54-208ENST00000461520 CIRBP-AS1Q8TBR5 109 aa4.7□□□□□ -1.66
USP54-208ENST00000461520 AP1S3Q96PC3 154 aa4.7□□□□□ -1.66
USP54-208ENST00000461520 CHCHD5Q9BSY4 110 aa4.7□□□□□ -1.66
USP54-208ENST00000461520 MANBALQ9NQG1 85 aa4.7□□□□□ -1.66
USP54-208ENST00000461520 KIF25-AS1Q9Y6Z4 181 aa4.7□□□□□ -1.66
USP54-208ENST00000461520 TRBV25-1A0A075B6N4 114 aa4.69□□□□□ -1.66
USP54-208ENST00000461520 TRAV1-1A0A0B4J248 108 aa4.69□□□□□ -1.66
USP54-208ENST00000461520 MUC21A0A0G2JKD1 596 aa4.69□□□□□ -1.66
USP54-208ENST00000461520 MUC21A0A140T8X8 626 aa4.69□□□□□ -1.66
USP54-208ENST00000461520 RPS20P60866 119 aaKnown RBP4.69□□□□□ -1.66
USP54-208ENST00000461520 NTM-AS1Q6ZSK4 140 aa4.69□□□□□ -1.66
USP54-208ENST00000461520 C11orf52Q96A22 123 aa4.69□□□□□ -1.66
USP54-208ENST00000461520 SMIM12Q96EX1 92 aa4.69□□□□□ -1.66
USP54-208ENST00000461520 DERL1Q9BUN8 251 aa4.69□□□□□ -1.66
USP54-208ENST00000461520 PRR34Q9NV39 138 aa4.69□□□□□ -1.66
USP54-208ENST00000461520 FAT3Q8TDW7 4589 aa4.69□□□□□ -1.66
USP54-208ENST00000461520 USP17L23D6RBM5 183 aa4.68□□□□□ -1.66
USP54-208ENST00000461520 TEX46H3BTG2 121 aa4.68□□□□□ -1.66
USP54-208ENST00000461520 H7C1H1 209 aa4.68□□□□□ -1.66
USP54-208ENST00000461520 IGLV2-8P01709 118 aa4.68□□□□□ -1.66
USP54-208ENST00000461520 IGLC6P0CF74 106 aa4.68□□□□□ -1.66
USP54-208ENST00000461520 RAB5CP51148 216 aa4.68□□□□□ -1.66
USP54-208ENST00000461520 SSTP61278 116 aa4.68□□□□□ -1.66
USP54-208ENST00000461520 RBX1P62877 108 aa4.68□□□□□ -1.66
USP54-208ENST00000461520 IQCJQ1A5X6 159 aa4.68□□□□□ -1.66
USP54-208ENST00000461520 EIF5AL1Q6IS14 154 aaKnown RBP4.68□□□□□ -1.66
USP54-208ENST00000461520 GNG13Q9P2W3 67 aa4.68□□□□□ -1.66
USP54-208ENST00000461520 IGHV1-24A0A0C4DH33 117 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 XKRY2A2RUG3 117 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 C19orf71A6NCJ1 209 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 F2Z2F3 143 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 M0QY20 66 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 VCYO14598 125 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 HLA-DQA1P01909 254 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 KRTAP10-4P60372 401 aaPredicted RBP4.67□□□□□ -1.66
USP54-208ENST00000461520 CACNG7P62955 275 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 CCL20P78556 96 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 GAGE6Q13070 117 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 CENPWQ5EE01 88 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 LINC00269Q8N2A0 174 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 C9orf163Q8N9P6 203 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 FER1L6-AS1Q8NA97 138 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 OR2D3Q8NGH3 330 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 TPPP3Q9BW30 176 aa4.67□□□□□ -1.66
USP54-208ENST00000461520 TRAV8-4A0A0B4J246 113 aa4.66□□□□□ -1.66
USP54-208ENST00000461520 PDE6DO43924 150 aa4.66□□□□□ -1.66
USP54-208ENST00000461520 OXTP01178 125 aa4.66□□□□□ -1.66
USP54-208ENST00000461520 P01737 135 aa4.66□□□□□ -1.66
USP54-208ENST00000461520 MGPP08493 103 aa4.66□□□□□ -1.66
USP54-208ENST00000461520 TRGC1P0CF51 173 aa4.66□□□□□ -1.66
USP54-208ENST00000461520 GZMBP10144 247 aa4.66□□□□□ -1.66
USP54-208ENST00000461520 GNG4P50150 75 aa4.66□□□□□ -1.66
USP54-208ENST00000461520 SULT1A2P50226 295 aa4.66□□□□□ -1.66
USP54-208ENST00000461520 MEF2BQ02080 365 aaPredicted RBP4.66□□□□□ -1.66
USP54-208ENST00000461520 REG3AQ06141 175 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms