RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 SNRPEP62304 92 aaKnown RBP6.04□□□□□ -1.44
SYNE1-214ENST00000454018 MRPL51Q4U2R6 128 aaKnown RBP6.04□□□□□ -1.44
SYNE1-214ENST00000454018 OR10J3Q5JRS4 329 aa6.04□□□□□ -1.44
SYNE1-214ENST00000454018 DAZ4Q86SG3 579 aaKnown RBP6.04□□□□□ -1.44
SYNE1-214ENST00000454018 CBLN2Q8IUK8 224 aa6.04□□□□□ -1.44
SYNE1-214ENST00000454018 GNB1LQ9BYB4 327 aa6.04□□□□□ -1.44
SYNE1-214ENST00000454018 GTSF1LQ9H1H1 148 aa6.04□□□□□ -1.44
SYNE1-214ENST00000454018 DAZ3Q9NR90 486 aaKnown RBP6.04□□□□□ -1.44
SYNE1-214ENST00000454018 Q9UF83 564 aa6.04□□□□□ -1.44
SYNE1-214ENST00000454018 TRBV6-5A0A0K0K1A5 114 aa6.04□□□□□ -1.44
SYNE1-214ENST00000454018 NCR2O95944 276 aa6.04□□□□□ -1.44
SYNE1-214ENST00000454018 S100A1P23297 94 aa6.04□□□□□ -1.44
SYNE1-214ENST00000454018 TMEM136Q6ZRR5 245 aa6.04□□□□□ -1.44
SYNE1-214ENST00000454018 ORMDL3Q8N138 153 aa6.04□□□□□ -1.44
SYNE1-214ENST00000454018 Q8N3U1 123 aa6.04□□□□□ -1.44
SYNE1-214ENST00000454018 RPL39LQ96EH5 51 aaKnown RBP6.04□□□□□ -1.44
SYNE1-214ENST00000454018 MRPS16Q9Y3D3 137 aaKnown RBP6.04□□□□□ -1.44
SYNE1-214ENST00000454018 TGIF2-C20orf24A0A0A6YYL0 155 aa6.03□□□□□ -1.44
SYNE1-214ENST00000454018 D6R8Y8 96 aa6.03□□□□□ -1.44
SYNE1-214ENST00000454018 PHOX2AO14813 284 aa6.03□□□□□ -1.44
SYNE1-214ENST00000454018 CKS2P33552 79 aa6.03□□□□□ -1.44
SYNE1-214ENST00000454018 RPS10P46783 165 aaKnown RBP6.03□□□□□ -1.44
SYNE1-214ENST00000454018 ESRGQ1W209 222 aa6.03□□□□□ -1.44
SYNE1-214ENST00000454018 TMEM97Q5BJF2 176 aa6.03□□□□□ -1.44
SYNE1-214ENST00000454018 LYPD5Q6UWN5 251 aa6.03□□□□□ -1.44
SYNE1-214ENST00000454018 YPEL4Q96NS1 127 aa6.03□□□□□ -1.44
SYNE1-214ENST00000454018 UPK3BQ9BT76 320 aa6.03□□□□□ -1.44
SYNE1-214ENST00000454018 LAMTOR2Q9Y2Q5 125 aa6.03□□□□□ -1.44
SYNE1-214ENST00000454018 LINC00588Q9Y4M8 146 aa6.03□□□□□ -1.44
SYNE1-214ENST00000454018 ALMS1Q8TCU4 4167 aa6.03□□□□□ -1.44
SYNE1-214ENST00000454018 LYSTQ99698 3801 aa6.03□□□□□ -1.44
SYNE1-214ENST00000454018 LCE6AA0A183 80 aa6.02□□□□□ -1.45
SYNE1-214ENST00000454018 SDHAF1A6NFY7 115 aa6.02□□□□□ -1.45
SYNE1-214ENST00000454018 SMKR1H3BMG3 65 aa6.02□□□□□ -1.45
SYNE1-214ENST00000454018 LY6G6CO95867 125 aa6.02□□□□□ -1.45
SYNE1-214ENST00000454018 LELP1Q5T871 98 aa6.02□□□□□ -1.45
SYNE1-214ENST00000454018 NRACQ8N912 160 aa6.02□□□□□ -1.45
SYNE1-214ENST00000454018 KRTAP9-2Q9BYQ4 174 aa6.02□□□□□ -1.45
SYNE1-214ENST00000454018 ST20Q9HBF5 79 aa6.02□□□□□ -1.45
SYNE1-214ENST00000454018 TRAV8-6A0A0B4J262 113 aa6.01□□□□□ -1.45
SYNE1-214ENST00000454018 GAS8-AS1O95177 125 aa6.01□□□□□ -1.45
SYNE1-214ENST00000454018 APCSP02743 223 aa6.01□□□□□ -1.45
SYNE1-214ENST00000454018 PRELID3AQ96N28 172 aa6.01□□□□□ -1.45
SYNE1-214ENST00000454018 C20orf78Q9BR46 151 aa6.01□□□□□ -1.45
SYNE1-214ENST00000454018 TMEM70Q9BUB7 260 aa6.01□□□□□ -1.45
SYNE1-214ENST00000454018 PLECQ15149 4684 aaKnown RBP6.01□□□□□ -1.45
SYNE1-214ENST00000454018 TRBV25-1A0A075B6N4 114 aa6□□□□□ -1.45
SYNE1-214ENST00000454018 TRBV6-8A0A0A6YYG3 113 aa6□□□□□ -1.45
SYNE1-214ENST00000454018 IGHV3-38A0A0C4DH36 116 aa6□□□□□ -1.45
SYNE1-214ENST00000454018 TRBV27A0A0K0K1C4 114 aa6□□□□□ -1.45
SYNE1-214ENST00000454018 KRTAP9-6A0A140TA67 174 aa6□□□□□ -1.45
SYNE1-214ENST00000454018 NPYP01303 97 aa6□□□□□ -1.45
SYNE1-214ENST00000454018 RPL32P62910 135 aaKnown RBP6□□□□□ -1.45
SYNE1-214ENST00000454018 COTL1Q14019 142 aa6□□□□□ -1.45
SYNE1-214ENST00000454018 I3L3M4 83 aa5.99□□□□□ -1.45
SYNE1-214ENST00000454018 POLR2KP53803 58 aaKnown RBP5.99□□□□□ -1.45
SYNE1-214ENST00000454018 SMIM2Q9BVW6 85 aa5.99□□□□□ -1.45
SYNE1-214ENST00000454018 TRAPPC1Q9Y5R8 145 aa5.99□□□□□ -1.45
SYNE1-214ENST00000454018 IGHV1-24A0A0C4DH33 117 aa5.99□□□□□ -1.45
SYNE1-214ENST00000454018 TCAPO15273 167 aa5.99□□□□□ -1.45
SYNE1-214ENST00000454018 SIVA1O15304 175 aa5.99□□□□□ -1.45
SYNE1-214ENST00000454018 PKIAP61925 76 aa5.99□□□□□ -1.45
SYNE1-214ENST00000454018 FABP9Q0Z7S8 132 aa5.99□□□□□ -1.45
SYNE1-214ENST00000454018 IQCJQ1A5X6 159 aa5.99□□□□□ -1.45
SYNE1-214ENST00000454018 WFDC10BQ8IUB3 73 aa5.99□□□□□ -1.45
SYNE1-214ENST00000454018 KIR2DL4Q99706 377 aa5.99□□□□□ -1.45
SYNE1-214ENST00000454018 MAP1LC3AQ9H492 121 aa5.99□□□□□ -1.45
SYNE1-214ENST00000454018 K7EP13 123 aa5.98□□□□□ -1.45
SYNE1-214ENST00000454018 SCO1O75880 301 aa5.98□□□□□ -1.45
SYNE1-214ENST00000454018 DNAH10OSP0CZ25 163 aa5.98□□□□□ -1.45
SYNE1-214ENST00000454018 PMCHP20382 165 aa5.98□□□□□ -1.45
SYNE1-214ENST00000454018 AMTP48728 403 aa5.98□□□□□ -1.45
SYNE1-214ENST00000454018 KIAA1644Q3SXP7 199 aa5.98□□□□□ -1.45
SYNE1-214ENST00000454018 TTC32Q5I0X7 151 aa5.98□□□□□ -1.45
SYNE1-214ENST00000454018 LINC01556Q5JQF7 62 aa5.98□□□□□ -1.45
SYNE1-214ENST00000454018 NTM-AS1Q6ZSK4 140 aa5.98□□□□□ -1.45
SYNE1-214ENST00000454018 TMEM243Q9BU79 118 aa5.98□□□□□ -1.45
SYNE1-214ENST00000454018 CHCHD7Q9BUK0 85 aa5.98□□□□□ -1.45
SYNE1-214ENST00000454018 Q9H8V8 135 aa5.98□□□□□ -1.45
SYNE1-214ENST00000454018 TSHBP01222 138 aa5.97□□□□□ -1.45
SYNE1-214ENST00000454018 FCER1GP30273 86 aa5.97□□□□□ -1.45
SYNE1-214ENST00000454018 CHCHD5Q9BSY4 110 aa5.97□□□□□ -1.45
SYNE1-214ENST00000454018 ALKBH7Q9BT30 221 aaPredicted RBP5.97□□□□□ -1.45
SYNE1-214ENST00000454018 COLCA2A8K830 154 aa5.96□□□□□ -1.46
SYNE1-214ENST00000454018 K7EMI3 77 aa5.96□□□□□ -1.46
SYNE1-214ENST00000454018 RAB5AP20339 215 aa5.96□□□□□ -1.46
SYNE1-214ENST00000454018 NIT1Q86X76 327 aa5.96□□□□□ -1.46
SYNE1-214ENST00000454018 C10orf126Q8N4M7 172 aa5.96□□□□□ -1.46
SYNE1-214ENST00000454018 NXT2Q9NPJ8 142 aaKnown RBP5.96□□□□□ -1.46
SYNE1-214ENST00000454018 DNAH1Q9P2D7 4330 aa5.96□□□□□ -1.46
SYNE1-214ENST00000454018 IGLV2-18A0A075B6J9 118 aa5.95□□□□□ -1.46
SYNE1-214ENST00000454018 TRAV9-2A0A087WT02 112 aa5.95□□□□□ -1.46
SYNE1-214ENST00000454018 A0A087WX48 190 aa5.95□□□□□ -1.46
SYNE1-214ENST00000454018 NBDYA0A0U1RRE5 68 aa5.95□□□□□ -1.46
SYNE1-214ENST00000454018 H7C423 109 aa5.95□□□□□ -1.46
SYNE1-214ENST00000454018 UBE2L6O14933 153 aa5.95□□□□□ -1.46
SYNE1-214ENST00000454018 GAGE2BQ13066 116 aa5.95□□□□□ -1.46
SYNE1-214ENST00000454018 GAGE2EQ4V326 116 aa5.95□□□□□ -1.46
SYNE1-214ENST00000454018 GAGE2AQ6NT46 116 aa5.95□□□□□ -1.46
SYNE1-214ENST00000454018 Q8N8P6 123 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms