RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 MUC22E2RYF6 1773 aaPredicted RBP-0.04□□□□□ -2.42
USP40-209ENST00000452724 FAM25AB3EWG3 89 aa-0.04□□□□□ -2.42
USP40-209ENST00000452724 FAM25CB3EWG5 89 aa-0.04□□□□□ -2.42
USP40-209ENST00000452724 FAM25GB3EWG6 89 aa-0.04□□□□□ -2.42
USP40-209ENST00000452724 C10orf142B7Z368 130 aa-0.04□□□□□ -2.42
USP40-209ENST00000452724 RBM3P98179 157 aaKnown RBP-0.04□□□□□ -2.42
USP40-209ENST00000452724 MEIG1Q5JSS6 88 aa-0.04□□□□□ -2.42
USP40-209ENST00000452724 C10orf128Q5T292 105 aa-0.04□□□□□ -2.42
USP40-209ENST00000452724 LSM10Q969L4 123 aaKnown RBP-0.04□□□□□ -2.42
USP40-209ENST00000452724 UNC79Q9P2D8 2635 aa-0.04□□□□□ -2.42
USP40-209ENST00000452724 M0R135 149 aa-0.05□□□□□ -2.42
USP40-209ENST00000452724 GNG7O60262 68 aa-0.05□□□□□ -2.42
USP40-209ENST00000452724 IFITM1P13164 125 aa-0.05□□□□□ -2.42
USP40-209ENST00000452724 FGF7P21781 194 aa-0.05□□□□□ -2.42
USP40-209ENST00000452724 Q56UQ5 140 aa-0.05□□□□□ -2.42
USP40-209ENST00000452724 PPP3R2Q96LZ3 170 aa-0.05□□□□□ -2.42
USP40-209ENST00000452724 TSC22D3Q99576 134 aa-0.05□□□□□ -2.42
USP40-209ENST00000452724 SCN3BQ9NY72 215 aa-0.05□□□□□ -2.42
USP40-209ENST00000452724 S100A3P33764 101 aa-0.06□□□□□ -2.42
USP40-209ENST00000452724 SPAG11BQ08648 103 aa-0.06□□□□□ -2.42
USP40-209ENST00000452724 SPAG11AQ6PDA7 123 aa-0.06□□□□□ -2.42
USP40-209ENST00000452724 TTC9CQ8N5M4 171 aa-0.06□□□□□ -2.42
USP40-209ENST00000452724 PRO0255Q9UI72 69 aa-0.06□□□□□ -2.42
USP40-209ENST00000452724 NAIPQ13075 1403 aa-0.06□□□□□ -2.42
USP40-209ENST00000452724 COL7A1Q02388 2944 aa-0.07□□□□□ -2.42
USP40-209ENST00000452724 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.07□□□□□ -2.42
USP40-209ENST00000452724 NPVFQ9HCQ7 196 aa-0.07□□□□□ -2.42
USP40-209ENST00000452724 SPCS1Q9Y6A9 102 aa-0.07□□□□□ -2.42
USP40-209ENST00000452724 PPIP5K1Q6PFW1 1433 aa-0.07□□□□□ -2.42
USP40-209ENST00000452724 CTXND1A0A1B0GTU2 59 aa-0.08□□□□□ -2.42
USP40-209ENST00000452724 CFDP00746 253 aaPredicted RBP-0.08□□□□□ -2.42
USP40-209ENST00000452724 COX17Q14061 63 aa-0.08□□□□□ -2.42
USP40-209ENST00000452724 WFDC2Q14508 124 aa-0.08□□□□□ -2.42
USP40-209ENST00000452724 C8orf59Q8N0T1 100 aaPredicted RBP-0.08□□□□□ -2.42
USP40-209ENST00000452724 AMELXQ99217 191 aa-0.08□□□□□ -2.42
USP40-209ENST00000452724 SPANXDQ9BXN6 97 aa-0.08□□□□□ -2.42
USP40-209ENST00000452724 BICRAQ9NZM4 1560 aa-0.08□□□□□ -2.42
USP40-209ENST00000452724 SPTBN2O15020 2390 aa-0.09□□□□□ -2.42
USP40-209ENST00000452724 MYH6P13533 1939 aa-0.09□□□□□ -2.42
USP40-209ENST00000452724 FAM208BQ5VWN6 2430 aa-0.09□□□□□ -2.42
USP40-209ENST00000452724 M0R3E3 92 aa-0.09□□□□□ -2.42
USP40-209ENST00000452724 SSSCA1O60232 199 aa-0.09□□□□□ -2.42
USP40-209ENST00000452724 APOC2P02655 101 aa-0.09□□□□□ -2.42
USP40-209ENST00000452724 Q5VSD8 79 aa-0.09□□□□□ -2.42
USP40-209ENST00000452724 MGST2Q99735 147 aa-0.09□□□□□ -2.42
USP40-209ENST00000452724 FAM107BQ9H098 131 aa-0.09□□□□□ -2.42
USP40-209ENST00000452724 V9GYH0 126 aa-0.09□□□□□ -2.42
USP40-209ENST00000452724 SIPA1L3O60292 1781 aaPredicted RBP-0.09□□□□□ -2.42
USP40-209ENST00000452724 MRC1P22897 1456 aa-0.1□□□□□ -2.42
USP40-209ENST00000452724 AHCTF1Q8WYP5 2266 aa-0.1□□□□□ -2.42
USP40-209ENST00000452724 TRBV7-3A0A075B6L6 115 aa-0.1□□□□□ -2.43
USP40-209ENST00000452724 TRAV22A0A0B4J277 110 aa-0.1□□□□□ -2.43
USP40-209ENST00000452724 UQCR11O14957 56 aa-0.1□□□□□ -2.43
USP40-209ENST00000452724 IFNGP01579 166 aa-0.1□□□□□ -2.43
USP40-209ENST00000452724 TPPP2P59282 170 aa-0.1□□□□□ -2.43
USP40-209ENST00000452724 BAGE2Q86Y30 109 aa-0.1□□□□□ -2.43
USP40-209ENST00000452724 ABCA2Q9BZC7 2435 aa-0.11□□□□□ -2.43
USP40-209ENST00000452724 LOC285095A0A1B0GVY8 99 aa-0.11□□□□□ -2.43
USP40-209ENST00000452724 F8VRH5 84 aa-0.11□□□□□ -2.43
USP40-209ENST00000452724 BCE1O60756 84 aa-0.11□□□□□ -2.43
USP40-209ENST00000452724 TMEM170BQ5T4T1 132 aa-0.11□□□□□ -2.43
USP40-209ENST00000452724 C5orf38Q86SI9 138 aa-0.11□□□□□ -2.43
USP40-209ENST00000452724 Q8IZM0 81 aa-0.11□□□□□ -2.43
USP40-209ENST00000452724 DYNLRB1Q9NP97 96 aa-0.11□□□□□ -2.43
USP40-209ENST00000452724 NDUFA4L2Q9NRX3 87 aa-0.11□□□□□ -2.43
USP40-209ENST00000452724 PARP14Q460N5 1801 aa-0.11□□□□□ -2.43
USP40-209ENST00000452724 LOC100130705A0A1B0GUX0 176 aa-0.12□□□□□ -2.43
USP40-209ENST00000452724 EFCAB10A6NFE3 127 aa-0.12□□□□□ -2.43
USP40-209ENST00000452724 APOC3P02656 99 aa-0.12□□□□□ -2.43
USP40-209ENST00000452724 AKAIN1P0CW23 69 aa-0.12□□□□□ -2.43
USP40-209ENST00000452724 HAMPP81172 84 aa-0.12□□□□□ -2.43
USP40-209ENST00000452724 CATR1Q13166 79 aa-0.12□□□□□ -2.43
USP40-209ENST00000452724 COMMD6Q7Z4G1 85 aa-0.12□□□□□ -2.43
USP40-209ENST00000452724 LINC00472Q9H8W2 130 aa-0.12□□□□□ -2.43
USP40-209ENST00000452724 LINC01558Q9Y6Z2 57 aa-0.12□□□□□ -2.43
USP40-209ENST00000452724 BIVM-ERCC5R4GMW8 1640 aa-0.13□□□□□ -2.43
USP40-209ENST00000452724 IFT172Q9UG01 1749 aa-0.13□□□□□ -2.43
USP40-209ENST00000452724 BCL9LQ86UU0 1499 aa-0.13□□□□□ -2.43
USP40-209ENST00000452724 MIF4GDA9UHW6 222 aaKnown RBP-0.13□□□□□ -2.43
USP40-209ENST00000452724 TNFP01375 233 aa-0.13□□□□□ -2.43
USP40-209ENST00000452724 DEFB109BQ30KR1 87 aa-0.13□□□□□ -2.43
USP40-209ENST00000452724 PP6455Q8WZ26 134 aa-0.13□□□□□ -2.43
USP40-209ENST00000452724 TP53AIP1Q9HCN2 124 aa-0.13□□□□□ -2.43
USP40-209ENST00000452724 CELSR1Q9NYQ6 3014 aa-0.13□□□□□ -2.43
USP40-209ENST00000452724 CACNA1AO00555 2505 aa-0.13□□□□□ -2.43
USP40-209ENST00000452724 ARFGEF1Q9Y6D6 1849 aa-0.13□□□□□ -2.43
USP40-209ENST00000452724 UBR5O95071 2799 aaPredicted RBP-0.13□□□□□ -2.43
USP40-209ENST00000452724 NHSL1Q5SYE7 1610 aa-0.13□□□□□ -2.43
USP40-209ENST00000452724 CPSF1Q10570 1443 aaKnown RBP-0.13□□□□□ -2.43
USP40-209ENST00000452724 AKAP6Q13023 2319 aa-0.14□□□□□ -2.43
USP40-209ENST00000452724 MBD5Q9P267 1494 aa-0.14□□□□□ -2.43
USP40-209ENST00000452724 IGLC7A0M8Q6 106 aa-0.14□□□□□ -2.43
USP40-209ENST00000452724 RPL13AP3Q6NVV1 102 aa-0.14□□□□□ -2.43
USP40-209ENST00000452724 WNK2Q9Y3S1 2297 aa-0.15□□□□□ -2.43
USP40-209ENST00000452724 CHD9Q3L8U1 2897 aa-0.15□□□□□ -2.43
USP40-209ENST00000452724 I3L2K1 104 aa-0.15□□□□□ -2.43
USP40-209ENST00000452724 HMGN4O00479 90 aa-0.15□□□□□ -2.43
USP40-209ENST00000452724 DCDP81605 110 aaKnown RBP-0.15□□□□□ -2.43
USP40-209ENST00000452724 Q6JHZ5 121 aa-0.15□□□□□ -2.43
USP40-209ENST00000452724 MYOZ3Q8TDC0 251 aa-0.15□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms