RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 LINC01551Q86U37 167 aa10.19□□□□□ -0.78
LIMS1-210ENST00000449684 FAM30AQ9NZY2 134 aa10.19□□□□□ -0.78
LIMS1-210ENST00000449684 INAFM2P0DMQ5 153 aa10.18□□□□□ -0.78
LIMS1-210ENST00000449684 FOXA3P55318 350 aaPredicted RBP10.18□□□□□ -0.78
LIMS1-210ENST00000449684 LINC01620Q4KN68 170 aa10.18□□□□□ -0.78
LIMS1-210ENST00000449684 PRR34Q9NV39 138 aa10.18□□□□□ -0.78
LIMS1-210ENST00000449684 IGLV10-54A0A075B6I4 117 aa10.17□□□□□ -0.78
LIMS1-210ENST00000449684 A0A1B0GUT8 65 aa10.17□□□□□ -0.78
LIMS1-210ENST00000449684 A0A1B0GUV1 79 aa10.17□□□□□ -0.78
LIMS1-210ENST00000449684 HIGD1CA8MV81 97 aa10.17□□□□□ -0.78
LIMS1-210ENST00000449684 USP17L23D6RBM5 183 aa10.17□□□□□ -0.78
LIMS1-210ENST00000449684 TMEM241Q24JQ0 296 aa10.17□□□□□ -0.78
LIMS1-210ENST00000449684 FAM74A3Q4VXF1 159 aa10.17□□□□□ -0.78
LIMS1-210ENST00000449684 TSKUQ8WUA8 353 aa10.17□□□□□ -0.78
LIMS1-210ENST00000449684 GFRA4Q9GZZ7 299 aa10.17□□□□□ -0.78
LIMS1-210ENST00000449684 OSTCQ9NRP0 149 aa10.17□□□□□ -0.78
LIMS1-210ENST00000449684 PEA15Q15121 130 aa10.16□□□□□ -0.78
LIMS1-210ENST00000449684 AMMECR1LQ6DCA0 310 aa10.16□□□□□ -0.78
LIMS1-210ENST00000449684 RPL39LQ96EH5 51 aaKnown RBP10.16□□□□□ -0.78
LIMS1-210ENST00000449684 IGLV4-60A0A075B6I1 120 aa10.15□□□□□ -0.78
LIMS1-210ENST00000449684 TRAV8-4A0A0B4J246 113 aa10.15□□□□□ -0.78
LIMS1-210ENST00000449684 FAM231BA6NCW3 169 aa10.15□□□□□ -0.78
LIMS1-210ENST00000449684 SDHAF1A6NFY7 115 aa10.15□□□□□ -0.78
LIMS1-210ENST00000449684 APCSP02743 223 aa10.15□□□□□ -0.78
LIMS1-210ENST00000449684 PMCHP20382 165 aa10.15□□□□□ -0.78
LIMS1-210ENST00000449684 C20orf203Q8NBC4 194 aa10.15□□□□□ -0.78
LIMS1-210ENST00000449684 NCR2O95944 276 aa10.14□□□□□ -0.79
LIMS1-210ENST00000449684 RIGQ13278 110 aa10.14□□□□□ -0.79
LIMS1-210ENST00000449684 ADIRFQ15847 76 aa10.14□□□□□ -0.79
LIMS1-210ENST00000449684 IGKV3OR2-268A0A0C4DH90 116 aa10.13□□□□□ -0.79
LIMS1-210ENST00000449684 I3L3M4 83 aa10.13□□□□□ -0.79
LIMS1-210ENST00000449684 RNASEKQ6P5S7 137 aaKnown RBP10.13□□□□□ -0.79
LIMS1-210ENST00000449684 Q6ZSA8 131 aa10.13□□□□□ -0.79
LIMS1-210ENST00000449684 TMEM191AQ9H0A3 160 aa10.13□□□□□ -0.79
LIMS1-210ENST00000449684 ST20Q9HBF5 79 aa10.13□□□□□ -0.79
LIMS1-210ENST00000449684 NAT8Q9UHE5 227 aa10.13□□□□□ -0.79
LIMS1-210ENST00000449684 ISOC2Q96AB3 205 aa10.12□□□□□ -0.79
LIMS1-210ENST00000449684 V9GYV3 84 aa10.12□□□□□ -0.79
LIMS1-210ENST00000449684 DNAH8Q96JB1 4490 aa10.11□□□□□ -0.79
LIMS1-210ENST00000449684 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.11□□□□□ -0.79
LIMS1-210ENST00000449684 IGKV2-29A2NJV5 120 aaPredicted RBP10.11□□□□□ -0.79
LIMS1-210ENST00000449684 H7C423 109 aa10.11□□□□□ -0.79
LIMS1-210ENST00000449684 PRSS1P07477 247 aa10.11□□□□□ -0.79
LIMS1-210ENST00000449684 RPL23P62829 140 aaKnown RBP10.11□□□□□ -0.79
LIMS1-210ENST00000449684 DGAT2L7PQ6IED9 249 aa10.11□□□□□ -0.79
LIMS1-210ENST00000449684 CLRN3Q8NCR9 226 aa10.11□□□□□ -0.79
LIMS1-210ENST00000449684 BTF3L4Q96K17 158 aa10.11□□□□□ -0.79
LIMS1-210ENST00000449684 SMDT1Q9H4I9 107 aa10.11□□□□□ -0.79
LIMS1-210ENST00000449684 NAT8BQ9UHF3 227 aa10.11□□□□□ -0.79
LIMS1-210ENST00000449684 VPS13BQ7Z7G8 4022 aa10.11□□□□□ -0.79
LIMS1-210ENST00000449684 FAT1Q14517 4588 aa10.11□□□□□ -0.79
LIMS1-210ENST00000449684 PLA2G1BP04054 148 aaKnown RBP10.1□□□□□ -0.79
LIMS1-210ENST00000449684 SCXQ7RTU7 201 aa10.1□□□□□ -0.79
LIMS1-210ENST00000449684 NUP35Q8NFH5 326 aa10.1□□□□□ -0.79
LIMS1-210ENST00000449684 MRAP2Q96G30 205 aa10.1□□□□□ -0.79
LIMS1-210ENST00000449684 TMEM101Q96IK0 257 aa10.1□□□□□ -0.79
LIMS1-210ENST00000449684 AP5S1Q9NUS5 200 aa10.1□□□□□ -0.79
LIMS1-210ENST00000449684 TRBV6-5A0A0K0K1A5 114 aa10.09□□□□□ -0.79
LIMS1-210ENST00000449684 hDV102S1A0JD36 115 aa10.09□□□□□ -0.79
LIMS1-210ENST00000449684 RAB4AP20338 218 aa10.09□□□□□ -0.79
LIMS1-210ENST00000449684 KRTAP26-1Q6PEX3 210 aa10.09□□□□□ -0.79
LIMS1-210ENST00000449684 AMN1Q8IY45 258 aa10.09□□□□□ -0.79
LIMS1-210ENST00000449684 LINC00528Q8N1L1 170 aa10.09□□□□□ -0.79
LIMS1-210ENST00000449684 CHAC1Q9BUX1 264 aa10.09□□□□□ -0.79
LIMS1-210ENST00000449684 C9JQL5 133 aa10.08□□□□□ -0.8
LIMS1-210ENST00000449684 FGF6P10767 208 aa10.08□□□□□ -0.8
LIMS1-210ENST00000449684 SRSF3P84103 164 aaKnown RBP10.08□□□□□ -0.8
LIMS1-210ENST00000449684 SRRM2Q9UQ35 2752 aaKnown RBP10.08□□□□□ -0.8
LIMS1-210ENST00000449684 GAGE12HA6NDE8 117 aa10.07□□□□□ -0.8
LIMS1-210ENST00000449684 GAS8-AS1O95177 125 aa10.07□□□□□ -0.8
LIMS1-210ENST00000449684 PPP1R17O96001 155 aa10.07□□□□□ -0.8
LIMS1-210ENST00000449684 ZNF25P17030 456 aaPredicted RBP10.07□□□□□ -0.8
LIMS1-210ENST00000449684 CFAP161Q6P656 301 aa10.07□□□□□ -0.8
LIMS1-210ENST00000449684 RNF185Q96GF1 192 aa10.07□□□□□ -0.8
LIMS1-210ENST00000449684 TMEM242Q9NWH2 141 aa10.07□□□□□ -0.8
LIMS1-210ENST00000449684 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.06□□□□□ -0.8
LIMS1-210ENST00000449684 FCER1GP30273 86 aa10.06□□□□□ -0.8
LIMS1-210ENST00000449684 CAMPP49913 170 aa10.06□□□□□ -0.8
LIMS1-210ENST00000449684 C9orf163Q8N9P6 203 aa10.06□□□□□ -0.8
LIMS1-210ENST00000449684 OR5A1Q8NGJ0 315 aa10.06□□□□□ -0.8
LIMS1-210ENST00000449684 SMKR1H3BMG3 65 aa10.05□□□□□ -0.8
LIMS1-210ENST00000449684 VCYO14598 125 aa10.05□□□□□ -0.8
LIMS1-210ENST00000449684 RPS10P46783 165 aaKnown RBP10.05□□□□□ -0.8
LIMS1-210ENST00000449684 RAB14P61106 215 aa10.05□□□□□ -0.8
LIMS1-210ENST00000449684 CIRBP-AS1Q8TBR5 109 aa10.05□□□□□ -0.8
LIMS1-210ENST00000449684 A0A1B0GW15 77 aa10.04□□□□□ -0.8
LIMS1-210ENST00000449684 SMIM27A0A1W2PRY6 76 aa10.04□□□□□ -0.8
LIMS1-210ENST00000449684 TSHBP01222 138 aa10.04□□□□□ -0.8
LIMS1-210ENST00000449684 CHCHD10Q8WYQ3 142 aaPredicted RBP10.04□□□□□ -0.8
LIMS1-210ENST00000449684 KIR2DL4Q99706 377 aa10.04□□□□□ -0.8
LIMS1-210ENST00000449684 TRBV27A0A0K0K1C4 114 aa10.03□□□□□ -0.8
LIMS1-210ENST00000449684 C7orf77A4D0Y5 90 aa10.03□□□□□ -0.8
LIMS1-210ENST00000449684 PPP1R2P9O14990 202 aa10.03□□□□□ -0.8
LIMS1-210ENST00000449684 S100A8P05109 93 aa10.03□□□□□ -0.8
LIMS1-210ENST00000449684 POLR2KP53803 58 aaKnown RBP10.03□□□□□ -0.8
LIMS1-210ENST00000449684 SMAGPQ0VAQ4 97 aa10.03□□□□□ -0.8
LIMS1-210ENST00000449684 FAM104BQ5XKR9 115 aa10.03□□□□□ -0.8
LIMS1-210ENST00000449684 DPH3Q96FX2 82 aa10.03□□□□□ -0.8
LIMS1-210ENST00000449684 IGHV3-64A0A075B6Q5 118 aa10.02□□□□□ -0.81
LIMS1-210ENST00000449684 ESDP10768 282 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms