RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 OR10AG1Q8NH19 301 aa4.7□□□□□ -1.66
LIMCH1-204ENST00000446625 STOML3Q8TAV4 291 aa4.7□□□□□ -1.66
LIMCH1-204ENST00000446625 MUC21A0A140T8X8 626 aa4.69□□□□□ -1.66
LIMCH1-204ENST00000446625 MT-ND6P03923 174 aa4.69□□□□□ -1.66
LIMCH1-204ENST00000446625 FAM162BQ5T6X4 162 aa4.69□□□□□ -1.66
LIMCH1-204ENST00000446625 RPL7L1Q6DKI1 246 aaKnown RBP4.69□□□□□ -1.66
LIMCH1-204ENST00000446625 TEX261Q6UWH6 196 aa4.69□□□□□ -1.66
LIMCH1-204ENST00000446625 ZNF471Q9BX82 626 aaPredicted RBP4.69□□□□□ -1.66
LIMCH1-204ENST00000446625 MUC17Q685J3 4493 aa4.68□□□□□ -1.66
LIMCH1-204ENST00000446625 IGKV3OR2-268A0A0C4DH90 116 aa4.68□□□□□ -1.66
LIMCH1-204ENST00000446625 A0A1W2PNN7 141 aa4.68□□□□□ -1.66
LIMCH1-204ENST00000446625 PEX7O00628 323 aa4.68□□□□□ -1.66
LIMCH1-204ENST00000446625 SSTP61278 116 aa4.68□□□□□ -1.66
LIMCH1-204ENST00000446625 ZNF726P1Q15940 193 aa4.68□□□□□ -1.66
LIMCH1-204ENST00000446625 ZNF674Q2M3X9 581 aa4.68□□□□□ -1.66
LIMCH1-204ENST00000446625 C1orf137Q5JT78 98 aa4.68□□□□□ -1.66
LIMCH1-204ENST00000446625 COX8CQ7Z4L0 72 aa4.68□□□□□ -1.66
LIMCH1-204ENST00000446625 LINC00526Q96FQ7 95 aa4.68□□□□□ -1.66
LIMCH1-204ENST00000446625 TMEM243Q9BU79 118 aa4.68□□□□□ -1.66
LIMCH1-204ENST00000446625 TMEM167BQ9NRX6 74 aa4.68□□□□□ -1.66
LIMCH1-204ENST00000446625 IGLV1-50A0A075B6I6 118 aa4.67□□□□□ -1.66
LIMCH1-204ENST00000446625 BORCS7-ASMTA0A0B4J1R7 106 aa4.67□□□□□ -1.66
LIMCH1-204ENST00000446625 A0A1B0GV50 99 aa4.67□□□□□ -1.66
LIMCH1-204ENST00000446625 SCO2A0A1W2PP80 73 aa4.67□□□□□ -1.66
LIMCH1-204ENST00000446625 CXorf1O96002 111 aa4.67□□□□□ -1.66
LIMCH1-204ENST00000446625 EIF5AP63241 154 aaKnown RBP4.67□□□□□ -1.66
LIMCH1-204ENST00000446625 ALKAL2Q6UX46 152 aa4.67□□□□□ -1.66
LIMCH1-204ENST00000446625 FER1L6-AS1Q8NA97 138 aa4.67□□□□□ -1.66
LIMCH1-204ENST00000446625 CHCHD10Q8WYQ3 142 aaPredicted RBP4.67□□□□□ -1.66
LIMCH1-204ENST00000446625 DIRC1Q969H9 104 aa4.67□□□□□ -1.66
LIMCH1-204ENST00000446625 ACTR3CQ9C0K3 210 aaPredicted RBP4.67□□□□□ -1.66
LIMCH1-204ENST00000446625 PKIGQ9Y2B9 76 aa4.67□□□□□ -1.66
LIMCH1-204ENST00000446625 A0A1W2PRE2 83 aa4.66□□□□□ -1.66
LIMCH1-204ENST00000446625 M0QY20 66 aa4.66□□□□□ -1.66
LIMCH1-204ENST00000446625 KRTAP1-4P0C5Y4 121 aa4.66□□□□□ -1.66
LIMCH1-204ENST00000446625 AMTP48728 403 aa4.66□□□□□ -1.66
LIMCH1-204ENST00000446625 PTTG1IPP53801 180 aa4.66□□□□□ -1.66
LIMCH1-204ENST00000446625 GAGE2BQ13066 116 aa4.66□□□□□ -1.66
LIMCH1-204ENST00000446625 CARD19Q96LW7 228 aa4.66□□□□□ -1.66
LIMCH1-204ENST00000446625 PSMG3Q9BT73 122 aaPredicted RBP4.66□□□□□ -1.66
LIMCH1-204ENST00000446625 ZFP30Q9Y2G7 519 aa4.66□□□□□ -1.66
LIMCH1-204ENST00000446625 FAM74A7A6NL05 159 aa4.65□□□□□ -1.67
LIMCH1-204ENST00000446625 H0Y9J4 135 aa4.65□□□□□ -1.67
LIMCH1-204ENST00000446625 UBE2L6O14933 153 aa4.65□□□□□ -1.67
LIMCH1-204ENST00000446625 IGLV7-43P04211 117 aa4.65□□□□□ -1.67
LIMCH1-204ENST00000446625 UBE2G1P62253 170 aa4.65□□□□□ -1.67
LIMCH1-204ENST00000446625 FOXI1Q12951 378 aa4.65□□□□□ -1.67
LIMCH1-204ENST00000446625 CTXND1A0A1B0GTU2 59 aa4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 MAP1LC3B2A6NCE7 125 aa4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 SNAI2O43623 268 aa4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 MBP02144 154 aa4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 SMIM17P0DL12 118 aa4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 AKR1C3P42330 323 aa4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 SYCNQ0VAF6 134 aa4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 C9orf116Q5BN46 136 aaPredicted RBP4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 CLLU1Q5K131 121 aa4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 SPANXN1Q5VSR9 72 aa4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 CST9LP1Q5W188 147 aa4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 SUMO4Q6EEV6 95 aa4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 EIF5AL1Q6IS14 154 aaKnown RBP4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 PHF5AQ7RTV0 110 aaKnown RBP4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 HIST1H2BAQ96A08 127 aa4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 MAP1LC3BQ9GZQ8 125 aa4.64□□□□□ -1.67
LIMCH1-204ENST00000446625 TRAV1-1A0A0B4J248 108 aa4.63□□□□□ -1.67
LIMCH1-204ENST00000446625 IGHV1-58A0A0C4DH39 117 aa4.63□□□□□ -1.67
LIMCH1-204ENST00000446625 LOC107984640A0A0U1RRK4 108 aa4.63□□□□□ -1.67
LIMCH1-204ENST00000446625 TSPAN13O95857 204 aa4.63□□□□□ -1.67
LIMCH1-204ENST00000446625 LTAP01374 205 aa4.63□□□□□ -1.67
LIMCH1-204ENST00000446625 MGPP08493 103 aa4.63□□□□□ -1.67
LIMCH1-204ENST00000446625 OR5AL1P0C617 328 aa4.63□□□□□ -1.67
LIMCH1-204ENST00000446625 FHITP49789 147 aa4.63□□□□□ -1.67
LIMCH1-204ENST00000446625 UBE2D1P51668 147 aa4.63□□□□□ -1.67
LIMCH1-204ENST00000446625 SERF2P84101 59 aa4.63□□□□□ -1.67
LIMCH1-204ENST00000446625 AKR1C8PQ5T2L2 129 aa4.63□□□□□ -1.67
LIMCH1-204ENST00000446625 FMC1Q96HJ9 113 aa4.63□□□□□ -1.67
LIMCH1-204ENST00000446625 PGLYRP4Q96LB8 373 aa4.63□□□□□ -1.67
LIMCH1-204ENST00000446625 AP1S3Q96PC3 154 aa4.63□□□□□ -1.67
LIMCH1-204ENST00000446625 LINC00862A6NCI5 91 aa4.62□□□□□ -1.67
LIMCH1-204ENST00000446625 UMAD1C9J7I0 102 aa4.62□□□□□ -1.67
LIMCH1-204ENST00000446625 CXCL1P09341 107 aa4.62□□□□□ -1.67
LIMCH1-204ENST00000446625 BCL2P10415 239 aa4.62□□□□□ -1.67
LIMCH1-204ENST00000446625 XCL1P47992 114 aa4.62□□□□□ -1.67
LIMCH1-204ENST00000446625 KRTAP11-1Q8IUC1 163 aa4.62□□□□□ -1.67
LIMCH1-204ENST00000446625 TPPP3Q9BW30 176 aa4.62□□□□□ -1.67
LIMCH1-204ENST00000446625 A0A087WZ39 114 aa4.61□□□□□ -1.67
LIMCH1-204ENST00000446625 ZNF561-AS1K7EIQ3 104 aa4.61□□□□□ -1.67
LIMCH1-204ENST00000446625 PAGE4O60829 102 aa4.61□□□□□ -1.67
LIMCH1-204ENST00000446625 RPL13AP40429 203 aaKnown RBP4.61□□□□□ -1.67
LIMCH1-204ENST00000446625 RAB14P61106 215 aa4.61□□□□□ -1.67
LIMCH1-204ENST00000446625 BLOC1S1P78537 153 aa4.61□□□□□ -1.67
LIMCH1-204ENST00000446625 COTL1Q14019 142 aa4.61□□□□□ -1.67
LIMCH1-204ENST00000446625 AMMECR1LQ6DCA0 310 aa4.61□□□□□ -1.67
LIMCH1-204ENST00000446625 RASL11AQ6T310 242 aa4.61□□□□□ -1.67
LIMCH1-204ENST00000446625 NKX6-2Q9C056 277 aaPredicted RBP4.61□□□□□ -1.67
LIMCH1-204ENST00000446625 CCL25O15444 150 aa4.6□□□□□ -1.67
LIMCH1-204ENST00000446625 FGF6P10767 208 aa4.6□□□□□ -1.67
LIMCH1-204ENST00000446625 CAMPP49913 170 aa4.6□□□□□ -1.67
LIMCH1-204ENST00000446625 NDUFA5Q16718 116 aa4.6□□□□□ -1.67
LIMCH1-204ENST00000446625 RNASEKQ6P5S7 137 aaKnown RBP4.6□□□□□ -1.67
LIMCH1-204ENST00000446625 SLC7A5P1Q8MH63 180 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms