RNA–Protein interactions for RNA: ENST00000431146.6

USHBP1-203, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2 BASIC

Gene USHBP1, Length 2,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-203ENST00000431146 SMAGPQ0VAQ4 97 aa11.99□□□□□ -0.49
USHBP1-203ENST00000431146 C1QTNF4Q9BXJ3 329 aa11.99□□□□□ -0.49
USHBP1-203ENST00000431146 CYSLTR1Q9Y271 337 aa11.99□□□□□ -0.49
USHBP1-203ENST00000431146 TSHBP01222 138 aa11.99□□□□□ -0.49
USHBP1-203ENST00000431146 C12orf54Q6X4T0 127 aa11.99□□□□□ -0.49
USHBP1-203ENST00000431146 PLAC8L1A1L4L8 177 aa11.98□□□□□ -0.49
USHBP1-203ENST00000431146 KRTAP24-1Q3LI83 254 aa11.98□□□□□ -0.49
USHBP1-203ENST00000431146 ZMAT4Q9H898 229 aa11.98□□□□□ -0.49
USHBP1-203ENST00000431146 STAB1Q9NY15 2570 aa11.98□□□□□ -0.49
USHBP1-203ENST00000431146 A0A087WX48 190 aa11.98□□□□□ -0.49
USHBP1-203ENST00000431146 IGKCP01834 107 aa11.98□□□□□ -0.49
USHBP1-203ENST00000431146 ERASQ7Z444 233 aa11.98□□□□□ -0.49
USHBP1-203ENST00000431146 BAALCQ8WXS3 180 aa11.98□□□□□ -0.49
USHBP1-203ENST00000431146 GEMIN7Q9H840 131 aaKnown RBP11.98□□□□□ -0.49
USHBP1-203ENST00000431146 GAGE10A6NGK3 116 aa11.97□□□□□ -0.49
USHBP1-203ENST00000431146 I3L3M4 83 aa11.97□□□□□ -0.49
USHBP1-203ENST00000431146 RHODO00212 210 aa11.97□□□□□ -0.49
USHBP1-203ENST00000431146 BVES-AS1Q5T3Y7 98 aa11.97□□□□□ -0.49
USHBP1-203ENST00000431146 ZC2HC1BQ5TFG8 222 aa11.97□□□□□ -0.49
USHBP1-203ENST00000431146 NEXN-AS1Q8NBZ9 246 aa11.97□□□□□ -0.49
USHBP1-203ENST00000431146 GTSF1LQ9H1H1 148 aa11.97□□□□□ -0.49
USHBP1-203ENST00000431146 EDA2RQ9HAV5 297 aa11.97□□□□□ -0.49
USHBP1-203ENST00000431146 DPM2O94777 84 aa11.96□□□□□ -0.49
USHBP1-203ENST00000431146 HSD52Q0P140 79 aa11.96□□□□□ -0.49
USHBP1-203ENST00000431146 RRN3P1Q2M238 152 aa11.96□□□□□ -0.49
USHBP1-203ENST00000431146 SLC25A34Q6PIV7 304 aa11.96□□□□□ -0.49
USHBP1-203ENST00000431146 C16orf74Q96GX8 76 aa11.96□□□□□ -0.49
USHBP1-203ENST00000431146 HHLA3Q9XRX5 114 aa11.96□□□□□ -0.49
USHBP1-203ENST00000431146 HERV-K104P63124 156 aa11.96□□□□□ -0.5
USHBP1-203ENST00000431146 EMP1P54849 157 aa11.95□□□□□ -0.5
USHBP1-203ENST00000431146 SPATA25Q9BR10 227 aa11.95□□□□□ -0.5
USHBP1-203ENST00000431146 TRAV8-6A0A0B4J262 113 aa11.95□□□□□ -0.5
USHBP1-203ENST00000431146 IGHV3-38A0A0C4DH36 116 aa11.95□□□□□ -0.5
USHBP1-203ENST00000431146 IGIPA6NJ69 53 aa11.95□□□□□ -0.5
USHBP1-203ENST00000431146 GAGE7O76087 117 aa11.95□□□□□ -0.5
USHBP1-203ENST00000431146 GAGE12FP0CL80 117 aa11.95□□□□□ -0.5
USHBP1-203ENST00000431146 GAGE12GP0CL81 117 aa11.95□□□□□ -0.5
USHBP1-203ENST00000431146 GAGE12IP0CL82 117 aa11.95□□□□□ -0.5
USHBP1-203ENST00000431146 COX8AP10176 69 aa11.94□□□□□ -0.5
USHBP1-203ENST00000431146 NMUP48645 174 aa11.94□□□□□ -0.5
USHBP1-203ENST00000431146 PHLDA1Q8WV24 401 aaPredicted RBP11.94□□□□□ -0.5
USHBP1-203ENST00000431146 OPRPNQ99935 248 aaPredicted RBP11.94□□□□□ -0.5
USHBP1-203ENST00000431146 TRAV12-1A0A0B4J245 112 aa11.93□□□□□ -0.5
USHBP1-203ENST00000431146 PRSS29PA6NIE9 313 aa11.93□□□□□ -0.5
USHBP1-203ENST00000431146 DAZ2Q13117 558 aaKnown RBP11.93□□□□□ -0.5
USHBP1-203ENST00000431146 OR5A1Q8NGJ0 315 aa11.93□□□□□ -0.5
USHBP1-203ENST00000431146 MAST4O15021 2626 aa11.93□□□□□ -0.5
USHBP1-203ENST00000431146 IGKV2D-26A0A0A0MRZ7 120 aa11.93□□□□□ -0.5
USHBP1-203ENST00000431146 RHOHQ15669 191 aa11.93□□□□□ -0.5
USHBP1-203ENST00000431146 MPV17L2Q567V2 206 aa11.93□□□□□ -0.5
USHBP1-203ENST00000431146 PKD1L1Q8TDX9 2849 aa11.93□□□□□ -0.5
USHBP1-203ENST00000431146 F8VRH5 84 aa11.92□□□□□ -0.5
USHBP1-203ENST00000431146 PCP2Q8IVA1 136 aa11.92□□□□□ -0.5
USHBP1-203ENST00000431146 TRGV2A0A075B6R0 118 aa11.92□□□□□ -0.5
USHBP1-203ENST00000431146 K7EP34 96 aa11.92□□□□□ -0.5
USHBP1-203ENST00000431146 FGF6P10767 208 aa11.92□□□□□ -0.5
USHBP1-203ENST00000431146 C20orf203Q8NBC4 194 aa11.92□□□□□ -0.5
USHBP1-203ENST00000431146 WFDC9Q8NEX5 89 aa11.92□□□□□ -0.5
USHBP1-203ENST00000431146 TTTY13Q9BZ97 58 aa11.92□□□□□ -0.5
USHBP1-203ENST00000431146 TRAV4A0A0B4J268 109 aa11.91□□□□□ -0.5
USHBP1-203ENST00000431146 GAGE12HA6NDE8 117 aa11.91□□□□□ -0.5
USHBP1-203ENST00000431146 PLNP26678 52 aa11.9□□□□□ -0.5
USHBP1-203ENST00000431146 ZNRF2Q8NHG8 242 aa11.9□□□□□ -0.5
USHBP1-203ENST00000431146 TIMM17AQ99595 171 aa11.9□□□□□ -0.5
USHBP1-203ENST00000431146 CMYA5Q8N3K9 4069 aa11.89□□□□□ -0.51
USHBP1-203ENST00000431146 SLC25A29Q8N8R3 303 aa11.89□□□□□ -0.51
USHBP1-203ENST00000431146 J3QR89 54 aa11.89□□□□□ -0.51
USHBP1-203ENST00000431146 CEMP1Q6PRD7 247 aaPredicted RBP11.89□□□□□ -0.51
USHBP1-203ENST00000431146 C2orf91Q6ZV80 131 aa11.89□□□□□ -0.51
USHBP1-203ENST00000431146 PRIMA1Q86XR5 153 aa11.89□□□□□ -0.51
USHBP1-203ENST00000431146 TMEM141Q96I45 108 aa11.89□□□□□ -0.51
USHBP1-203ENST00000431146 OVOL2Q9BRP0 275 aa11.89□□□□□ -0.51
USHBP1-203ENST00000431146 K7EQD1 137 aa11.88□□□□□ -0.51
USHBP1-203ENST00000431146 SEC11AP67812 179 aa11.88□□□□□ -0.51
USHBP1-203ENST00000431146 PMVKQ15126 192 aa11.88□□□□□ -0.51
USHBP1-203ENST00000431146 DEFB135Q30KP9 77 aa11.88□□□□□ -0.51
USHBP1-203ENST00000431146 DNAJC30Q96LL9 226 aa11.88□□□□□ -0.51
USHBP1-203ENST00000431146 X6R8D5 127 aa11.88□□□□□ -0.51
USHBP1-203ENST00000431146 LINC01549A6NIU2 74 aa11.87□□□□□ -0.51
USHBP1-203ENST00000431146 OXLD1Q5BKU9 147 aa11.87□□□□□ -0.51
USHBP1-203ENST00000431146 BOD1L2Q8IYS8 172 aa11.87□□□□□ -0.51
USHBP1-203ENST00000431146 IGLV4-69A0A075B6H9 119 aa11.87□□□□□ -0.51
USHBP1-203ENST00000431146 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.87□□□□□ -0.51
USHBP1-203ENST00000431146 IGKV2-29A2NJV5 120 aaPredicted RBP11.87□□□□□ -0.51
USHBP1-203ENST00000431146 C3orf56Q8N813 242 aa11.87□□□□□ -0.51
USHBP1-203ENST00000431146 CHCHD7Q9BUK0 85 aa11.87□□□□□ -0.51
USHBP1-203ENST00000431146 DEFB130BP0DP73 79 aa11.86□□□□□ -0.51
USHBP1-203ENST00000431146 DEFB130AP0DP74 79 aa11.86□□□□□ -0.51
USHBP1-203ENST00000431146 SS18L2Q9UHA2 77 aa11.86□□□□□ -0.51
USHBP1-203ENST00000431146 TRBV7-3A0A075B6L6 115 aa11.86□□□□□ -0.51
USHBP1-203ENST00000431146 GAGE12JA6NER3 117 aa11.86□□□□□ -0.51
USHBP1-203ENST00000431146 GAGE4Q13068 117 aa11.86□□□□□ -0.51
USHBP1-203ENST00000431146 GAGE5Q13069 117 aa11.86□□□□□ -0.51
USHBP1-203ENST00000431146 GAGE13Q4V321 117 aa11.86□□□□□ -0.51
USHBP1-203ENST00000431146 LOC100131303A0A0U1RQF7 123 aa11.85□□□□□ -0.51
USHBP1-203ENST00000431146 C9orf118A6NHY6 69 aa11.85□□□□□ -0.51
USHBP1-203ENST00000431146 C11orf86A6NJI1 115 aa11.85□□□□□ -0.51
USHBP1-203ENST00000431146 RNASE13Q5GAN3 156 aaKnown RBP11.85□□□□□ -0.51
USHBP1-203ENST00000431146 COL6A5A8TX70 2615 aa11.85□□□□□ -0.51
USHBP1-203ENST00000431146 IGLV4-3A0A075B6K6 122 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms