RNA–Protein interactions for RNA: ENST00000428678.1

UPK3BP1-201, Transcript of uroplakin 3B pseudogene 1, humanhuman

BASIC

Gene UPK3BP1, Length 509 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BP1-201ENST00000428678 REG3GQ6UW15 175 aa11.45□□□□□ -0.58
UPK3BP1-201ENST00000428678 TMUB2Q71RG4 321 aa11.45□□□□□ -0.58
UPK3BP1-201ENST00000428678 ARPC5O15511 151 aa11.44□□□□□ -0.58
UPK3BP1-201ENST00000428678 KRTAP10-8P60410 259 aa11.44□□□□□ -0.58
UPK3BP1-201ENST00000428678 A0A096LNI7 61 aa11.43□□□□□ -0.58
UPK3BP1-201ENST00000428678 IGLC6P0CF74 106 aa11.43□□□□□ -0.58
UPK3BP1-201ENST00000428678 RPL35P42766 123 aaKnown RBP11.43□□□□□ -0.58
UPK3BP1-201ENST00000428678 CACNG7P62955 275 aa11.43□□□□□ -0.58
UPK3BP1-201ENST00000428678 SPINK6Q6UWN8 80 aa11.43□□□□□ -0.58
UPK3BP1-201ENST00000428678 OR2D3Q8NGH3 330 aa11.43□□□□□ -0.58
UPK3BP1-201ENST00000428678 MBD3L1Q8WWY6 194 aa11.43□□□□□ -0.58
UPK3BP1-201ENST00000428678 NIT2Q9NQR4 276 aa11.43□□□□□ -0.58
UPK3BP1-201ENST00000428678 RPS20P60866 119 aaKnown RBP11.42□□□□□ -0.58
UPK3BP1-201ENST00000428678 KCNRGQ8N5I3 272 aa11.42□□□□□ -0.58
UPK3BP1-201ENST00000428678 GAS8-AS1O95177 125 aa11.41□□□□□ -0.58
UPK3BP1-201ENST00000428678 TRGC1P0CF51 173 aa11.41□□□□□ -0.58
UPK3BP1-201ENST00000428678 CHCHD10Q8WYQ3 142 aaPredicted RBP11.41□□□□□ -0.58
UPK3BP1-201ENST00000428678 GVQW2A0A096LPI5 108 aaPredicted RBP11.4□□□□□ -0.58
UPK3BP1-201ENST00000428678 G3V3Q6 166 aa11.4□□□□□ -0.58
UPK3BP1-201ENST00000428678 AMMECR1LQ6DCA0 310 aa11.4□□□□□ -0.58
UPK3BP1-201ENST00000428678 CENPWQ5EE01 88 aa11.39□□□□□ -0.59
UPK3BP1-201ENST00000428678 LINC00474Q9P2X8 69 aa11.39□□□□□ -0.59
UPK3BP1-201ENST00000428678 UMAD1C9J7I0 102 aa11.38□□□□□ -0.59
UPK3BP1-201ENST00000428678 F2Z2F3 143 aa11.38□□□□□ -0.59
UPK3BP1-201ENST00000428678 XKRY2A2RUG3 117 aa11.37□□□□□ -0.59
UPK3BP1-201ENST00000428678 H2AFB1P0C5Y9 115 aa11.37□□□□□ -0.59
UPK3BP1-201ENST00000428678 RNASEKQ6P5S7 137 aaKnown RBP11.37□□□□□ -0.59
UPK3BP1-201ENST00000428678 LYZL1Q6UWQ5 148 aa11.37□□□□□ -0.59
UPK3BP1-201ENST00000428678 C19orf71A6NCJ1 209 aa11.36□□□□□ -0.59
UPK3BP1-201ENST00000428678 NTF3P20783 257 aa11.36□□□□□ -0.59
UPK3BP1-201ENST00000428678 Q6ZRP5 223 aa11.36□□□□□ -0.59
UPK3BP1-201ENST00000428678 C11orf52Q96A22 123 aa11.36□□□□□ -0.59
UPK3BP1-201ENST00000428678 PKIGQ9Y2B9 76 aa11.36□□□□□ -0.59
UPK3BP1-201ENST00000428678 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.35□□□□□ -0.59
UPK3BP1-201ENST00000428678 IGKV2-29A2NJV5 120 aaPredicted RBP11.35□□□□□ -0.59
UPK3BP1-201ENST00000428678 IFNA1P01562 189 aa11.35□□□□□ -0.59
UPK3BP1-201ENST00000428678 FOXI1Q12951 378 aa11.35□□□□□ -0.59
UPK3BP1-201ENST00000428678 SRSF9Q13242 221 aaKnown RBP eCLIP11.35□□□□□ -0.59
UPK3BP1-201ENST00000428678 GNG13Q9P2W3 67 aa11.35□□□□□ -0.59
UPK3BP1-201ENST00000428678 XCL1P47992 114 aa11.34□□□□□ -0.59
UPK3BP1-201ENST00000428678 Q6ZNX1 250 aa11.34□□□□□ -0.59
UPK3BP1-201ENST00000428678 GATD1Q8NB37 220 aa11.34□□□□□ -0.59
UPK3BP1-201ENST00000428678 LINC00526Q96FQ7 95 aa11.34□□□□□ -0.59
UPK3BP1-201ENST00000428678 CARD19Q96LW7 228 aa11.34□□□□□ -0.59
UPK3BP1-201ENST00000428678 TRAV26-2A0A0B4J265 109 aa11.33□□□□□ -0.6
UPK3BP1-201ENST00000428678 SMLR1H3BR10 107 aa11.33□□□□□ -0.6
UPK3BP1-201ENST00000428678 FGF6P10767 208 aa11.33□□□□□ -0.6
UPK3BP1-201ENST00000428678 GNG4P50150 75 aa11.33□□□□□ -0.6
UPK3BP1-201ENST00000428678 MANBALQ9NQG1 85 aa11.33□□□□□ -0.6
UPK3BP1-201ENST00000428678 RAB19A4D1S5 217 aa11.32□□□□□ -0.6
UPK3BP1-201ENST00000428678 APCSP02743 223 aa11.32□□□□□ -0.6
UPK3BP1-201ENST00000428678 TWIST1Q15672 202 aa11.32□□□□□ -0.6
UPK3BP1-201ENST00000428678 IGHV1-58A0A0C4DH39 117 aa11.31□□□□□ -0.6
UPK3BP1-201ENST00000428678 NCR2O95944 276 aa11.31□□□□□ -0.6
UPK3BP1-201ENST00000428678 CCL20P78556 96 aa11.31□□□□□ -0.6
UPK3BP1-201ENST00000428678 RPL39LQ96EH5 51 aaKnown RBP11.31□□□□□ -0.6
UPK3BP1-201ENST00000428678 LPAP08519 4548 aa11.31□□□□□ -0.6
UPK3BP1-201ENST00000428678 H7C423 109 aa11.3□□□□□ -0.6
UPK3BP1-201ENST00000428678 CCL25O15444 150 aa11.3□□□□□ -0.6
UPK3BP1-201ENST00000428678 CTRLP40313 264 aa11.3□□□□□ -0.6
UPK3BP1-201ENST00000428678 ZNF345Q14585 488 aa11.3□□□□□ -0.6
UPK3BP1-201ENST00000428678 C9orf62Q8N4C0 152 aa11.3□□□□□ -0.6
UPK3BP1-201ENST00000428678 OR5A1Q8NGJ0 315 aa11.3□□□□□ -0.6
UPK3BP1-201ENST00000428678 SMIM12Q96EX1 92 aa11.3□□□□□ -0.6
UPK3BP1-201ENST00000428678 LINC00959A0A1B0GUT2 108 aa11.28□□□□□ -0.6
UPK3BP1-201ENST00000428678 ZNF25P17030 456 aaPredicted RBP11.28□□□□□ -0.6
UPK3BP1-201ENST00000428678 SYCNQ0VAF6 134 aa11.28□□□□□ -0.6
UPK3BP1-201ENST00000428678 TMEM101Q96IK0 257 aa11.28□□□□□ -0.6
UPK3BP1-201ENST00000428678 BTF3L4Q96K17 158 aa11.28□□□□□ -0.6
UPK3BP1-201ENST00000428678 BIN3Q9NQY0 253 aa11.28□□□□□ -0.6
UPK3BP1-201ENST00000428678 KANTRA0A1W2PQU2 76 aa11.27□□□□□ -0.61
UPK3BP1-201ENST00000428678 FAM231BA6NCW3 169 aa11.27□□□□□ -0.61
UPK3BP1-201ENST00000428678 ZNF561-AS1K7EIQ3 104 aa11.27□□□□□ -0.61
UPK3BP1-201ENST00000428678 PTTG1IPP53801 180 aa11.27□□□□□ -0.61
UPK3BP1-201ENST00000428678 TRBV20OR9-2A0A075B6H5 130 aa11.26□□□□□ -0.61
UPK3BP1-201ENST00000428678 SDHAF1A6NFY7 115 aa11.26□□□□□ -0.61
UPK3BP1-201ENST00000428678 BCL2L11O43521 198 aa11.26□□□□□ -0.61
UPK3BP1-201ENST00000428678 GAGE2BQ13066 116 aa11.26□□□□□ -0.61
UPK3BP1-201ENST00000428678 NUDT10Q8NFP7 164 aa11.26□□□□□ -0.61
UPK3BP1-201ENST00000428678 NUDT11Q96G61 164 aa11.26□□□□□ -0.61
UPK3BP1-201ENST00000428678 CNFNQ9BYD5 112 aa11.26□□□□□ -0.61
UPK3BP1-201ENST00000428678 PMCHP20382 165 aa11.25□□□□□ -0.61
UPK3BP1-201ENST00000428678 EIF5AP63241 154 aaKnown RBP11.25□□□□□ -0.61
UPK3BP1-201ENST00000428678 SMIM15Q7Z3B0 74 aa11.25□□□□□ -0.61
UPK3BP1-201ENST00000428678 MED9Q9NWA0 146 aa11.25□□□□□ -0.61
UPK3BP1-201ENST00000428678 LOC107984640A0A0U1RRK4 108 aa11.24□□□□□ -0.61
UPK3BP1-201ENST00000428678 PDE6DO43924 150 aa11.24□□□□□ -0.61
UPK3BP1-201ENST00000428678 CAMPP49913 170 aa11.24□□□□□ -0.61
UPK3BP1-201ENST00000428678 FOXA3P55318 350 aaPredicted RBP11.24□□□□□ -0.61
UPK3BP1-201ENST00000428678 MEF2BQ02080 365 aaPredicted RBP11.24□□□□□ -0.61
UPK3BP1-201ENST00000428678 SS18Q15532 418 aa11.24□□□□□ -0.61
UPK3BP1-201ENST00000428678 TRAV1-1A0A0B4J248 108 aa11.23□□□□□ -0.61
UPK3BP1-201ENST00000428678 MT-ND6P03923 174 aa11.23□□□□□ -0.61
UPK3BP1-201ENST00000428678 TEX261Q6UWH6 196 aa11.23□□□□□ -0.61
UPK3BP1-201ENST00000428678 RPP21Q9H633 154 aaKnown RBP11.23□□□□□ -0.61
UPK3BP1-201ENST00000428678 A0A1W2PNN7 141 aa11.22□□□□□ -0.61
UPK3BP1-201ENST00000428678 TEX46H3BTG2 121 aa11.22□□□□□ -0.61
UPK3BP1-201ENST00000428678 I3L3M4 83 aa11.22□□□□□ -0.61
UPK3BP1-201ENST00000428678 CD164L2Q6UWJ8 174 aa11.22□□□□□ -0.61
UPK3BP1-201ENST00000428678 ISOC2Q96AB3 205 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms