RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 IGKV3D-7A0A0C4DH55 119 aa11.76□□□□□ -0.53
C9orf3-206ENST00000428313 EPM2AB3EWF7 344 aa11.76□□□□□ -0.53
C9orf3-206ENST00000428313 F8WDY8 70 aa11.75□□□□□ -0.53
C9orf3-206ENST00000428313 DEFB123Q8N688 67 aa11.75□□□□□ -0.53
C9orf3-206ENST00000428313 OBSCN-AS1Q96MR7 158 aa11.75□□□□□ -0.53
C9orf3-206ENST00000428313 ABCA4P78363 2273 aa11.75□□□□□ -0.53
C9orf3-206ENST00000428313 IGLV5-45A0A087WSX0 123 aa11.75□□□□□ -0.53
C9orf3-206ENST00000428313 PSMB8P28062 276 aa11.74□□□□□ -0.53
C9orf3-206ENST00000428313 PFN2P35080 140 aa11.74□□□□□ -0.53
C9orf3-206ENST00000428313 FHL2Q14192 279 aa11.74□□□□□ -0.53
C9orf3-206ENST00000428313 WDFY4Q6ZS81 3184 aa11.74□□□□□ -0.53
C9orf3-206ENST00000428313 G3V318 75 aa11.74□□□□□ -0.53
C9orf3-206ENST00000428313 NDUFA4O00483 81 aa11.74□□□□□ -0.53
C9orf3-206ENST00000428313 C10orf105Q8TEF2 133 aa11.74□□□□□ -0.53
C9orf3-206ENST00000428313 A0A087WVE0 104 aa11.73□□□□□ -0.53
C9orf3-206ENST00000428313 LINC00846Q9NV44 126 aa11.73□□□□□ -0.53
C9orf3-206ENST00000428313 UBE2D4Q9Y2X8 147 aa11.73□□□□□ -0.53
C9orf3-206ENST00000428313 DCHS1Q96JQ0 3298 aa11.73□□□□□ -0.53
C9orf3-206ENST00000428313 FAM223BA6NKX1 122 aa11.72□□□□□ -0.53
C9orf3-206ENST00000428313 PF4P02776 101 aa11.72□□□□□ -0.53
C9orf3-206ENST00000428313 FAM223AQ8IWN6 122 aa11.72□□□□□ -0.53
C9orf3-206ENST00000428313 PRORYQ9H606 182 aa11.72□□□□□ -0.53
C9orf3-206ENST00000428313 POLEQ07864 2286 aa11.72□□□□□ -0.53
C9orf3-206ENST00000428313 SOSTDC1Q6X4U4 206 aa11.72□□□□□ -0.53
C9orf3-206ENST00000428313 RPL28P46779 137 aaKnown RBP11.71□□□□□ -0.53
C9orf3-206ENST00000428313 HIST2H2BCQ6DN03 193 aa11.71□□□□□ -0.53
C9orf3-206ENST00000428313 HIST2H2BDQ6DRA6 164 aa11.71□□□□□ -0.53
C9orf3-206ENST00000428313 RNASE13Q5GAN3 156 aaKnown RBP11.71□□□□□ -0.54
C9orf3-206ENST00000428313 SMG1Q96Q15 3661 aaKnown RBP11.71□□□□□ -0.54
C9orf3-206ENST00000428313 IGLV5-39A0A0G2JS06 123 aa11.7□□□□□ -0.54
C9orf3-206ENST00000428313 J3QLI3 93 aa11.7□□□□□ -0.54
C9orf3-206ENST00000428313 RS1O15537 224 aa11.7□□□□□ -0.54
C9orf3-206ENST00000428313 UNQ9165/PRO28630Q6UXU0 137 aa11.7□□□□□ -0.54
C9orf3-206ENST00000428313 Q9H8V8 135 aa11.7□□□□□ -0.54
C9orf3-206ENST00000428313 Q9HAA7 133 aa11.7□□□□□ -0.54
C9orf3-206ENST00000428313 CDKN2A-AS1Q9UH64 79 aa11.7□□□□□ -0.54
C9orf3-206ENST00000428313 SERP1Q9Y6X1 66 aa11.7□□□□□ -0.54
C9orf3-206ENST00000428313 TRAV12-2A0A075B6T6 113 aa11.69□□□□□ -0.54
C9orf3-206ENST00000428313 FAM236DA0A1B0GTK5 79 aa11.69□□□□□ -0.54
C9orf3-206ENST00000428313 IGHG2P01859 326 aa11.69□□□□□ -0.54
C9orf3-206ENST00000428313 FAM236CP0DP71 79 aa11.69□□□□□ -0.54
C9orf3-206ENST00000428313 C14orf132Q9NPU4 83 aa11.69□□□□□ -0.54
C9orf3-206ENST00000428313 SPENQ96T58 3664 aaKnown RBP11.69□□□□□ -0.54
C9orf3-206ENST00000428313 ZDBF2Q9HCK1 2354 aa11.69□□□□□ -0.54
C9orf3-206ENST00000428313 ATP5EP2Q5VTU8 51 aa11.69□□□□□ -0.54
C9orf3-206ENST00000428313 TRAV13-2A0A0B4J235 113 aa11.68□□□□□ -0.54
C9orf3-206ENST00000428313 TMEM243Q9BU79 118 aa11.68□□□□□ -0.54
C9orf3-206ENST00000428313 CHCHD7Q9BUK0 85 aa11.68□□□□□ -0.54
C9orf3-206ENST00000428313 TPRP12270 2363 aaKnown RBP11.67□□□□□ -0.54
C9orf3-206ENST00000428313 TTC28Q96AY4 2481 aa11.67□□□□□ -0.54
C9orf3-206ENST00000428313 ZFHX4Q86UP3 3567 aa11.67□□□□□ -0.54
C9orf3-206ENST00000428313 S100A7L2Q5SY68 101 aa11.67□□□□□ -0.54
C9orf3-206ENST00000428313 LINC00336Q6ZUF6 198 aa11.67□□□□□ -0.54
C9orf3-206ENST00000428313 GHRHP01286 108 aa11.66□□□□□ -0.54
C9orf3-206ENST00000428313 DEFB124Q8NES8 71 aa11.66□□□□□ -0.54
C9orf3-206ENST00000428313 CEP250Q9BV73 2442 aa11.66□□□□□ -0.54
C9orf3-206ENST00000428313 IGHV1OR15-1A0A075B7D0 117 aa11.66□□□□□ -0.54
C9orf3-206ENST00000428313 RBMY1BA6NDE4 496 aaKnown RBP11.65□□□□□ -0.54
C9orf3-206ENST00000428313 RBMY1EA6NEQ0 496 aaKnown RBP11.65□□□□□ -0.54
C9orf3-206ENST00000428313 TRBV12-3P01733 135 aa11.65□□□□□ -0.54
C9orf3-206ENST00000428313 RBMY1DP0C7P1 496 aaKnown RBP11.65□□□□□ -0.54
C9orf3-206ENST00000428313 RBMY1A1P0DJD3 496 aaKnown RBP11.65□□□□□ -0.54
C9orf3-206ENST00000428313 RBMY1CP0DJD4 496 aa11.65□□□□□ -0.54
C9orf3-206ENST00000428313 RBMY1FQ15415 496 aaKnown RBP11.65□□□□□ -0.54
C9orf3-206ENST00000428313 C19orf54Q5BKX5 351 aa11.65□□□□□ -0.54
C9orf3-206ENST00000428313 C9orf129Q5T035 196 aaKnown RBP11.64□□□□□ -0.55
C9orf3-206ENST00000428313 DMXL2Q8TDJ6 3036 aa11.63□□□□□ -0.55
C9orf3-206ENST00000428313 H0YGX0 51 aa11.63□□□□□ -0.55
C9orf3-206ENST00000428313 ZNF625Q96I27 306 aaPredicted RBP11.63□□□□□ -0.55
C9orf3-206ENST00000428313 RHPN1-AS1Q9BWJ2 59 aa11.63□□□□□ -0.55
C9orf3-206ENST00000428313 C1orf43Q9BWL3 253 aa11.63□□□□□ -0.55
C9orf3-206ENST00000428313 CRPP02741 224 aa11.62□□□□□ -0.55
C9orf3-206ENST00000428313 HOXD3P31249 432 aaPredicted RBP11.62□□□□□ -0.55
C9orf3-206ENST00000428313 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.62□□□□□ -0.55
C9orf3-206ENST00000428313 A0A0U1RRA0 63 aa11.62□□□□□ -0.55
C9orf3-206ENST00000428313 FAM19A3Q7Z5A8 133 aa11.62□□□□□ -0.55
C9orf3-206ENST00000428313 GPR179Q6PRD1 2367 aa11.61□□□□□ -0.55
C9orf3-206ENST00000428313 IGKV3-7A0A075B6H7 116 aa11.61□□□□□ -0.55
C9orf3-206ENST00000428313 XCL1P47992 114 aa11.61□□□□□ -0.55
C9orf3-206ENST00000428313 C5orf56Q8N8D9 126 aa11.61□□□□□ -0.55
C9orf3-206ENST00000428313 XCL2Q9UBD3 114 aa11.61□□□□□ -0.55
C9orf3-206ENST00000428313 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.61□□□□□ -0.55
C9orf3-206ENST00000428313 A0A087WYN8 130 aa11.61□□□□□ -0.55
C9orf3-206ENST00000428313 IGKV2-29A2NJV5 120 aaPredicted RBP11.61□□□□□ -0.55
C9orf3-206ENST00000428313 BCE1O60756 84 aa11.61□□□□□ -0.55
C9orf3-206ENST00000428313 LINC00467Q9BRT7 94 aa11.61□□□□□ -0.55
C9orf3-206ENST00000428313 TRBV10-3A0A0K0K1G6 114 aa11.6□□□□□ -0.55
C9orf3-206ENST00000428313 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.6□□□□□ -0.55
C9orf3-206ENST00000428313 CCKP06307 115 aa11.6□□□□□ -0.55
C9orf3-206ENST00000428313 SIRPDQ9H106 197 aa11.6□□□□□ -0.55
C9orf3-206ENST00000428313 SMIM1B2RUZ4 78 aa11.59□□□□□ -0.55
C9orf3-206ENST00000428313 COX6A2Q02221 97 aa11.59□□□□□ -0.55
C9orf3-206ENST00000428313 C20orf197Q8N268 126 aa11.59□□□□□ -0.55
C9orf3-206ENST00000428313 TMEM86BQ8N661 226 aa11.59□□□□□ -0.55
C9orf3-206ENST00000428313 SMIM26A0A096LP01 95 aa11.58□□□□□ -0.55
C9orf3-206ENST00000428313 LYPD5Q6UWN5 251 aa11.58□□□□□ -0.55
C9orf3-206ENST00000428313 HILS1P60008 231 aa11.58□□□□□ -0.56
C9orf3-206ENST00000428313 C16orf95Q9H693 158 aa11.58□□□□□ -0.56
C9orf3-206ENST00000428313 RP1L1Q8IWN7 2480 aaPredicted RBP11.57□□□□□ -0.56
C9orf3-206ENST00000428313 H7BZZ5 65 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms