RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CFHR3Q02985 330 aa6.45□□□□□ -1.38
USP40-203ENST00000427112 TCTEX1D4Q5JR98 221 aa6.45□□□□□ -1.38
USP40-203ENST00000427112 TOMM6Q96B49 74 aa6.45□□□□□ -1.38
USP40-203ENST00000427112 ITPR2Q14571 2701 aa6.45□□□□□ -1.38
USP40-203ENST00000427112 TM2D2Q9BX73 214 aa6.45□□□□□ -1.38
USP40-203ENST00000427112 ZNF469Q96JG9 3925 aaPredicted RBP6.45□□□□□ -1.38
USP40-203ENST00000427112 TRAV13-1A0A0B4J241 112 aa6.45□□□□□ -1.38
USP40-203ENST00000427112 FHL3Q13643 280 aa6.45□□□□□ -1.38
USP40-203ENST00000427112 DEFB112Q30KQ8 113 aa6.45□□□□□ -1.38
USP40-203ENST00000427112 CNFNQ9BYD5 112 aa6.45□□□□□ -1.38
USP40-203ENST00000427112 UBR5O95071 2799 aaPredicted RBP6.44□□□□□ -1.38
USP40-203ENST00000427112 NDUFA7O95182 113 aa6.44□□□□□ -1.38
USP40-203ENST00000427112 SLURP1P55000 103 aa6.44□□□□□ -1.38
USP40-203ENST00000427112 EBI3Q14213 229 aa6.44□□□□□ -1.38
USP40-203ENST00000427112 ANKRD29Q8N6D5 301 aa6.44□□□□□ -1.38
USP40-203ENST00000427112 DAZ1Q9NQZ3 744 aaKnown RBP6.44□□□□□ -1.38
USP40-203ENST00000427112 RNF223E7ERA6 249 aa6.44□□□□□ -1.38
USP40-203ENST00000427112 DEFB131AP59861 70 aa6.44□□□□□ -1.38
USP40-203ENST00000427112 ITLN2Q8WWU7 325 aaPredicted RBP6.44□□□□□ -1.38
USP40-203ENST00000427112 TRAV4A0A0B4J268 109 aa6.43□□□□□ -1.38
USP40-203ENST00000427112 DGAT2L7PQ6IED9 249 aa6.43□□□□□ -1.38
USP40-203ENST00000427112 SMPXQ9UHP9 88 aa6.43□□□□□ -1.38
USP40-203ENST00000427112 J3QQQ9 107 aa6.43□□□□□ -1.38
USP40-203ENST00000427112 MUSTN1Q8IVN3 82 aa6.43□□□□□ -1.38
USP40-203ENST00000427112 IGLV4-69A0A075B6H9 119 aa6.43□□□□□ -1.38
USP40-203ENST00000427112 CD28P10747 220 aa6.43□□□□□ -1.38
USP40-203ENST00000427112 HIST2H2BCQ6DN03 193 aa6.43□□□□□ -1.38
USP40-203ENST00000427112 TMEM190Q8WZ59 177 aa6.43□□□□□ -1.38
USP40-203ENST00000427112 TMEM101Q96IK0 257 aa6.43□□□□□ -1.38
USP40-203ENST00000427112 OVOL1O14753 267 aa6.42□□□□□ -1.38
USP40-203ENST00000427112 PRB2P02812 416 aaPredicted RBP6.42□□□□□ -1.38
USP40-203ENST00000427112 CFC1BP0CG36 223 aa6.42□□□□□ -1.38
USP40-203ENST00000427112 CFC1P0CG37 223 aa6.42□□□□□ -1.38
USP40-203ENST00000427112 CIRBPQ14011 172 aaKnown RBP6.42□□□□□ -1.38
USP40-203ENST00000427112 C5orf47Q569G3 176 aa6.42□□□□□ -1.38
USP40-203ENST00000427112 PSMG3-AS1Q96PY0 264 aa6.42□□□□□ -1.38
USP40-203ENST00000427112 HIGD1BQ9P298 99 aa6.42□□□□□ -1.38
USP40-203ENST00000427112 XCL2Q9UBD3 114 aa6.42□□□□□ -1.38
USP40-203ENST00000427112 KLK5Q9Y337 293 aaPredicted RBP6.42□□□□□ -1.38
USP40-203ENST00000427112 A0A0J9YY99 117 aa6.42□□□□□ -1.38
USP40-203ENST00000427112 H3BMM0 161 aa6.42□□□□□ -1.38
USP40-203ENST00000427112 IGHV4OR15-8A0A075B7B6 117 aa6.42□□□□□ -1.38
USP40-203ENST00000427112 A0A087WW49 117 aa6.42□□□□□ -1.38
USP40-203ENST00000427112 CLEC2BQ92478 149 aa6.42□□□□□ -1.38
USP40-203ENST00000427112 NDUFA4O00483 81 aa6.41□□□□□ -1.38
USP40-203ENST00000427112 EIF4EBP3O60516 100 aaPredicted RBP6.41□□□□□ -1.38
USP40-203ENST00000427112 PLA2G2AP14555 144 aa6.41□□□□□ -1.38
USP40-203ENST00000427112 HRCT1Q6UXD1 115 aa6.41□□□□□ -1.38
USP40-203ENST00000427112 KMT2BQ9UMN6 2715 aaPredicted RBP6.41□□□□□ -1.38
USP40-203ENST00000427112 OOSP1A8MZH6 123 aa6.41□□□□□ -1.38
USP40-203ENST00000427112 LINC00694P0DN24 101 aa6.41□□□□□ -1.38
USP40-203ENST00000427112 Q6ZSN1 163 aa6.41□□□□□ -1.38
USP40-203ENST00000427112 TEN1Q86WV5 123 aa6.41□□□□□ -1.38
USP40-203ENST00000427112 NDUFA11Q86Y39 141 aa6.41□□□□□ -1.38
USP40-203ENST00000427112 F5H768 121 aa6.41□□□□□ -1.38
USP40-203ENST00000427112 UBE2WQ96B02 151 aa6.41□□□□□ -1.38
USP40-203ENST00000427112 C11orf68Q9H3H3 251 aaKnown RBP6.41□□□□□ -1.38
USP40-203ENST00000427112 VCYO14598 125 aa6.4□□□□□ -1.38
USP40-203ENST00000427112 CARD19Q96LW7 228 aa6.4□□□□□ -1.38
USP40-203ENST00000427112 U3KQE9 123 aa6.4□□□□□ -1.38
USP40-203ENST00000427112 RBMY1A1P0DJD3 496 aaKnown RBP6.4□□□□□ -1.38
USP40-203ENST00000427112 RBMY1CP0DJD4 496 aa6.4□□□□□ -1.38
USP40-203ENST00000427112 LINC00315P59091 139 aa6.4□□□□□ -1.38
USP40-203ENST00000427112 RBMY1FQ15415 496 aaKnown RBP6.4□□□□□ -1.38
USP40-203ENST00000427112 FBXL19-AS1Q494R0 122 aa6.4□□□□□ -1.38
USP40-203ENST00000427112 TEX49A0A1B0GTD5 131 aa6.4□□□□□ -1.39
USP40-203ENST00000427112 SOCS3O14543 225 aa6.4□□□□□ -1.39
USP40-203ENST00000427112 DNAL4O96015 105 aa6.4□□□□□ -1.39
USP40-203ENST00000427112 TRACP01848 142 aa6.4□□□□□ -1.39
USP40-203ENST00000427112 ZNF415Q09FC8 603 aa6.4□□□□□ -1.39
USP40-203ENST00000427112 TRGV11A0A075B6L2 103 aa6.39□□□□□ -1.39
USP40-203ENST00000427112 FAM223BA6NKX1 122 aa6.39□□□□□ -1.39
USP40-203ENST00000427112 MSMBP08118 114 aa6.39□□□□□ -1.39
USP40-203ENST00000427112 FAM223AQ8IWN6 122 aa6.39□□□□□ -1.39
USP40-203ENST00000427112 LINC01587Q99440 93 aa6.39□□□□□ -1.39
USP40-203ENST00000427112 PRO0461Q9UI25 63 aa6.39□□□□□ -1.39
USP40-203ENST00000427112 SNRPD3P62318 126 aaKnown RBP6.39□□□□□ -1.39
USP40-203ENST00000427112 COX8CQ7Z4L0 72 aa6.39□□□□□ -1.39
USP40-203ENST00000427112 ATRQ13535 2644 aa6.39□□□□□ -1.39
USP40-203ENST00000427112 HOXD3P31249 432 aaPredicted RBP6.39□□□□□ -1.39
USP40-203ENST00000427112 WFDC11Q8NEX6 87 aa6.39□□□□□ -1.39
USP40-203ENST00000427112 BRK1Q8WUW1 75 aa6.39□□□□□ -1.39
USP40-203ENST00000427112 IGKV3D-7A0A0C4DH55 119 aa6.38□□□□□ -1.39
USP40-203ENST00000427112 IGIPA6NJ69 53 aa6.38□□□□□ -1.39
USP40-203ENST00000427112 J3KT08 172 aa6.38□□□□□ -1.39
USP40-203ENST00000427112 DCANP1Q8TF63 244 aa6.38□□□□□ -1.39
USP40-203ENST00000427112 HELZ2Q9BYK8 2649 aaKnown RBP6.38□□□□□ -1.39
USP40-203ENST00000427112 IGHV1OR15-1A0A075B7D0 117 aa6.38□□□□□ -1.39
USP40-203ENST00000427112 TRAV12-1A0A0B4J245 112 aa6.38□□□□□ -1.39
USP40-203ENST00000427112 ADAMTSL4-AS1Q5T5F5 129 aa6.38□□□□□ -1.39
USP40-203ENST00000427112 TMEM126AQ9H061 195 aa6.38□□□□□ -1.39
USP40-203ENST00000427112 PRO1854Q9UHT4 67 aa6.38□□□□□ -1.39
USP40-203ENST00000427112 TNFRSF18Q9Y5U5 241 aa6.38□□□□□ -1.39
USP40-203ENST00000427112 IGHG2P01859 326 aa6.38□□□□□ -1.39
USP40-203ENST00000427112 CFAP126Q5VTH2 177 aa6.38□□□□□ -1.39
USP40-203ENST00000427112 TOMM7Q9P0U1 55 aa6.38□□□□□ -1.39
USP40-203ENST00000427112 M0QY20 66 aa6.37□□□□□ -1.39
USP40-203ENST00000427112 POLR2KP53803 58 aaKnown RBP6.37□□□□□ -1.39
USP40-203ENST00000427112 WFDC10AQ9H1F0 79 aa6.37□□□□□ -1.39
USP40-203ENST00000427112 KIF25-AS1Q9Y6Z4 181 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms