RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 DEFB4AO15263 64 aa4.24□□□□□ -1.73
HMGB3-202ENST00000419110 SCGB1D1O95968 90 aa4.24□□□□□ -1.73
HMGB3-202ENST00000419110 ATP5G1P05496 136 aa4.24□□□□□ -1.73
HMGB3-202ENST00000419110 P0DMU3 169 aa4.24□□□□□ -1.73
HMGB3-202ENST00000419110 FAM231AP0DMU4 169 aa4.24□□□□□ -1.73
HMGB3-202ENST00000419110 FAM231CP0DMU5 169 aa4.24□□□□□ -1.73
HMGB3-202ENST00000419110 POLR2KP53803 58 aaKnown RBP4.24□□□□□ -1.73
HMGB3-202ENST00000419110 SMAGPQ0VAQ4 97 aa4.24□□□□□ -1.73
HMGB3-202ENST00000419110 LCE4AQ5TA78 99 aa4.24□□□□□ -1.73
HMGB3-202ENST00000419110 MRAPQ8TCY5 172 aa4.24□□□□□ -1.73
HMGB3-202ENST00000419110 C12orf57Q99622 126 aa4.24□□□□□ -1.73
HMGB3-202ENST00000419110 ZMAT4Q9H898 229 aa4.24□□□□□ -1.73
HMGB3-202ENST00000419110 CELA1Q9UNI1 258 aa4.24□□□□□ -1.73
HMGB3-202ENST00000419110 TRBV7-3A0A075B6L6 115 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 A0A096LNJ9 63 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 GAGE12JA6NER3 117 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 H0Y8G0 127 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 TSHBP01222 138 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 PRB2P02812 416 aaPredicted RBP4.23□□□□□ -1.73
HMGB3-202ENST00000419110 C3orf79P0CE67 100 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 S100A12P80511 92 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 GAGE1Q13065 139 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 GAGE4Q13068 117 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 GAGE5Q13069 117 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 JOSD1Q15040 202 aaPredicted RBP4.23□□□□□ -1.73
HMGB3-202ENST00000419110 KRTAP19-4Q3LI73 84 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 GAGE13Q4V321 117 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 TMEM97Q5BJF2 176 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 PYY3Q5JQD4 70 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 C2orf66Q6UXQ4 117 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 DAZ4Q86SG3 579 aaKnown RBP4.23□□□□□ -1.73
HMGB3-202ENST00000419110 SLC25A29Q8N8R3 303 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 IFI27L1Q96BM0 104 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 TM2D3Q9BRN9 247 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 DAZ3Q9NR90 486 aaKnown RBP4.23□□□□□ -1.73
HMGB3-202ENST00000419110 PRO0255Q9UI72 69 aa4.23□□□□□ -1.73
HMGB3-202ENST00000419110 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.22□□□□□ -1.73
HMGB3-202ENST00000419110 SYS1-DBNDD2H3BUS1 97 aa4.22□□□□□ -1.73
HMGB3-202ENST00000419110 HTN3P15516 51 aa4.22□□□□□ -1.73
HMGB3-202ENST00000419110 UBE2D3P61077 147 aa4.22□□□□□ -1.73
HMGB3-202ENST00000419110 UBE2D2P62837 147 aa4.22□□□□□ -1.73
HMGB3-202ENST00000419110 DEFB121Q5J5C9 76 aa4.22□□□□□ -1.73
HMGB3-202ENST00000419110 PAPPA-AS1Q5QFB9 102 aa4.22□□□□□ -1.73
HMGB3-202ENST00000419110 PET117Q6UWS5 81 aa4.22□□□□□ -1.73
HMGB3-202ENST00000419110 Q6ZN92 141 aa4.22□□□□□ -1.73
HMGB3-202ENST00000419110 ZNRF2Q8NHG8 242 aa4.22□□□□□ -1.73
HMGB3-202ENST00000419110 PHLDA1Q8WV24 401 aaPredicted RBP4.22□□□□□ -1.73
HMGB3-202ENST00000419110 TOMM6Q96B49 74 aa4.22□□□□□ -1.73
HMGB3-202ENST00000419110 SCGB3A1Q96QR1 104 aa4.22□□□□□ -1.73
HMGB3-202ENST00000419110 VAMP8Q9BV40 100 aa4.22□□□□□ -1.73
HMGB3-202ENST00000419110 TRBV25-1A0A075B6N4 114 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 IGHV3-38A0A0C4DH36 116 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 A0A0J9YWU9 116 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 HSBP1L1C9JCN9 74 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 F5H768 121 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 UBE2L6O14933 153 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 LINC00694P0DN24 101 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 GYPEP15421 78 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 CRYBA4P53673 196 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 FHL2Q14192 279 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 Q6ZSN1 163 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 LINC00173Q6ZV60 143 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 SH2D6Q7Z4S9 175 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 LINC00518Q8N0U6 118 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 C20orf203Q8NBC4 194 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 TMEM141Q96I45 108 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 TIMM17AQ99595 171 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 TMEM243Q9BU79 118 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 SPANXA1Q9NS26 97 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 ICOSQ9Y6W8 199 aa4.21□□□□□ -1.74
HMGB3-202ENST00000419110 TENM3Q9P273 2699 aa4.2□□□□□ -1.74
HMGB3-202ENST00000419110 PRSS1P07477 247 aa4.2□□□□□ -1.74
HMGB3-202ENST00000419110 NPSP0C0P6 89 aa4.2□□□□□ -1.74
HMGB3-202ENST00000419110 PKIAP61925 76 aa4.2□□□□□ -1.74
HMGB3-202ENST00000419110 RPL39P62891 51 aaKnown RBP4.2□□□□□ -1.74
HMGB3-202ENST00000419110 LINC01545Q5VT33 79 aa4.2□□□□□ -1.74
HMGB3-202ENST00000419110 LGALS9CQ6DKI2 356 aa4.2□□□□□ -1.74
HMGB3-202ENST00000419110 TEX43Q6ZNM6 134 aa4.2□□□□□ -1.74
HMGB3-202ENST00000419110 ERASQ7Z444 233 aa4.2□□□□□ -1.74
HMGB3-202ENST00000419110 SBSPONQ8IVN8 264 aa4.2□□□□□ -1.74
HMGB3-202ENST00000419110 B9D2Q9BPU9 175 aa4.2□□□□□ -1.74
HMGB3-202ENST00000419110 C2orf88Q9BSF0 95 aa4.2□□□□□ -1.74
HMGB3-202ENST00000419110 HHLA3Q9XRX5 114 aa4.2□□□□□ -1.74
HMGB3-202ENST00000419110 NBEAL2Q6ZNJ1 2754 aa4.19□□□□□ -1.74
HMGB3-202ENST00000419110 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.19□□□□□ -1.74
HMGB3-202ENST00000419110 TRAV26-1A0A087WT03 109 aa4.19□□□□□ -1.74
HMGB3-202ENST00000419110 TRAV12-1A0A0B4J245 112 aa4.19□□□□□ -1.74
HMGB3-202ENST00000419110 LOC100131303A0A0U1RQF7 123 aa4.19□□□□□ -1.74
HMGB3-202ENST00000419110 IGKV2-29A2NJV5 120 aaPredicted RBP4.19□□□□□ -1.74
HMGB3-202ENST00000419110 TSTD3H0UI37 97 aa4.19□□□□□ -1.74
HMGB3-202ENST00000419110 PLNP26678 52 aa4.19□□□□□ -1.74
HMGB3-202ENST00000419110 MRPL23Q16540 153 aaKnown RBP4.19□□□□□ -1.74
HMGB3-202ENST00000419110 C12orf74Q32Q52 190 aa4.19□□□□□ -1.74
HMGB3-202ENST00000419110 AMMECR1LQ6DCA0 310 aa4.19□□□□□ -1.74
HMGB3-202ENST00000419110 Q6ZTC4 211 aa4.19□□□□□ -1.74
HMGB3-202ENST00000419110 SPATA12Q7Z6I5 190 aa4.19□□□□□ -1.74
HMGB3-202ENST00000419110 ATP6V0E2Q8NHE4 81 aa4.19□□□□□ -1.74
HMGB3-202ENST00000419110 C11orf45Q8TAV5 145 aa4.19□□□□□ -1.74
HMGB3-202ENST00000419110 GTSF1LQ9H1H1 148 aa4.19□□□□□ -1.74
HMGB3-202ENST00000419110 A0A087WX48 190 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms