RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 PRADC1Q9BSG0 188 aa8.63□□□□□ -1.03
LINC00339-202ENST00000416769 GNB1LQ9BYB4 327 aa8.63□□□□□ -1.03
LINC00339-202ENST00000416769 HMCN2Q8NDA2 5059 aa8.62□□□□□ -1.03
LINC00339-202ENST00000416769 TRBV10-1A0A0K0K1A3 114 aa8.62□□□□□ -1.03
LINC00339-202ENST00000416769 H7C1H1 209 aa8.62□□□□□ -1.03
LINC00339-202ENST00000416769 J3QL48 77 aa8.62□□□□□ -1.03
LINC00339-202ENST00000416769 SRIP30626 198 aa8.62□□□□□ -1.03
LINC00339-202ENST00000416769 RHOHQ15669 191 aa8.62□□□□□ -1.03
LINC00339-202ENST00000416769 TMEM136Q6ZRR5 245 aa8.62□□□□□ -1.03
LINC00339-202ENST00000416769 M0QY20 66 aa8.61□□□□□ -1.03
LINC00339-202ENST00000416769 SCO1O75880 301 aa8.61□□□□□ -1.03
LINC00339-202ENST00000416769 HLA-DQA1P01909 254 aa8.61□□□□□ -1.03
LINC00339-202ENST00000416769 MRPL51Q4U2R6 128 aaKnown RBP8.61□□□□□ -1.03
LINC00339-202ENST00000416769 SUMO4Q6EEV6 95 aa8.61□□□□□ -1.03
LINC00339-202ENST00000416769 MRAP2Q96G30 205 aa8.61□□□□□ -1.03
LINC00339-202ENST00000416769 COLCA2A8K830 154 aa8.6□□□□□ -1.03
LINC00339-202ENST00000416769 FAM229AH3BQW9 127 aa8.6□□□□□ -1.03
LINC00339-202ENST00000416769 MT-ND6P03923 174 aa8.6□□□□□ -1.03
LINC00339-202ENST00000416769 Q8N3U1 123 aa8.6□□□□□ -1.03
LINC00339-202ENST00000416769 DNAJC30Q96LL9 226 aa8.6□□□□□ -1.03
LINC00339-202ENST00000416769 Q9HAA7 133 aa8.6□□□□□ -1.03
LINC00339-202ENST00000416769 NIT2Q9NQR4 276 aa8.6□□□□□ -1.03
LINC00339-202ENST00000416769 UBR4Q5T4S7 5183 aa8.6□□□□□ -1.03
LINC00339-202ENST00000416769 PPP1R17O96001 155 aa8.59□□□□□ -1.03
LINC00339-202ENST00000416769 PPBPP02775 128 aa8.59□□□□□ -1.03
LINC00339-202ENST00000416769 NEXN-AS1Q8NBZ9 246 aa8.59□□□□□ -1.03
LINC00339-202ENST00000416769 TRBV7-3A0A075B6L6 115 aa8.58□□□□□ -1.04
LINC00339-202ENST00000416769 TRAV9-2A0A087WT02 112 aa8.58□□□□□ -1.04
LINC00339-202ENST00000416769 TRAV26-2A0A0B4J265 109 aa8.58□□□□□ -1.04
LINC00339-202ENST00000416769 APCSP02743 223 aa8.58□□□□□ -1.04
LINC00339-202ENST00000416769 CKS2P33552 79 aa8.58□□□□□ -1.04
LINC00339-202ENST00000416769 RPL36AP83881 106 aaKnown RBP8.58□□□□□ -1.04
LINC00339-202ENST00000416769 SH2D6Q7Z4S9 175 aa8.58□□□□□ -1.04
LINC00339-202ENST00000416769 Q8N814 137 aa8.58□□□□□ -1.04
LINC00339-202ENST00000416769 RPL36ALQ969Q0 106 aaKnown RBP8.58□□□□□ -1.04
LINC00339-202ENST00000416769 TMEM70Q9BUB7 260 aa8.58□□□□□ -1.04
LINC00339-202ENST00000416769 Q9UF83 564 aa8.58□□□□□ -1.04
LINC00339-202ENST00000416769 TRAPPC1Q9Y5R8 145 aa8.58□□□□□ -1.04
LINC00339-202ENST00000416769 GAGE12JA6NER3 117 aa8.57□□□□□ -1.04
LINC00339-202ENST00000416769 IGHV3-30P01768 117 aa8.57□□□□□ -1.04
LINC00339-202ENST00000416769 IGHV3-33P01772 117 aa8.57□□□□□ -1.04
LINC00339-202ENST00000416769 IGHV3-30-3P0DP02 117 aa8.57□□□□□ -1.04
LINC00339-202ENST00000416769 IGHV3-30-5P0DP03 117 aa8.57□□□□□ -1.04
LINC00339-202ENST00000416769 GAGE1Q13065 139 aa8.57□□□□□ -1.04
LINC00339-202ENST00000416769 GAGE4Q13068 117 aa8.57□□□□□ -1.04
LINC00339-202ENST00000416769 GAGE5Q13069 117 aa8.57□□□□□ -1.04
LINC00339-202ENST00000416769 LINC01620Q4KN68 170 aa8.57□□□□□ -1.04
LINC00339-202ENST00000416769 GAGE13Q4V321 117 aa8.57□□□□□ -1.04
LINC00339-202ENST00000416769 ORMDL3Q8N138 153 aa8.57□□□□□ -1.04
LINC00339-202ENST00000416769 MRPL18Q9H0U6 180 aaKnown RBP8.57□□□□□ -1.04
LINC00339-202ENST00000416769 TRBV6-5A0A0K0K1A5 114 aa8.56□□□□□ -1.04
LINC00339-202ENST00000416769 D6R8Y8 96 aa8.56□□□□□ -1.04
LINC00339-202ENST00000416769 SMKR1H3BMG3 65 aa8.56□□□□□ -1.04
LINC00339-202ENST00000416769 PHOX2AO14813 284 aa8.56□□□□□ -1.04
LINC00339-202ENST00000416769 PSCAO43653 123 aa8.56□□□□□ -1.04
LINC00339-202ENST00000416769 GAS8-AS1O95177 125 aa8.56□□□□□ -1.04
LINC00339-202ENST00000416769 LINC00694P0DN24 101 aa8.56□□□□□ -1.04
LINC00339-202ENST00000416769 FABP9Q0Z7S8 132 aa8.56□□□□□ -1.04
LINC00339-202ENST00000416769 OR10J3Q5JRS4 329 aa8.56□□□□□ -1.04
LINC00339-202ENST00000416769 RPL39LQ96EH5 51 aaKnown RBP8.56□□□□□ -1.04
LINC00339-202ENST00000416769 FAT3Q8TDW7 4589 aa8.55□□□□□ -1.04
LINC00339-202ENST00000416769 IGHV3-38A0A0C4DH36 116 aa8.55□□□□□ -1.04
LINC00339-202ENST00000416769 LECT2O14960 151 aa8.55□□□□□ -1.04
LINC00339-202ENST00000416769 RAB5AP20339 215 aa8.55□□□□□ -1.04
LINC00339-202ENST00000416769 RPS10P46783 165 aaKnown RBP8.55□□□□□ -1.04
LINC00339-202ENST00000416769 UBE2D3P61077 147 aa8.55□□□□□ -1.04
LINC00339-202ENST00000416769 UBE2D2P62837 147 aa8.55□□□□□ -1.04
LINC00339-202ENST00000416769 LINC00528Q8N1L1 170 aa8.55□□□□□ -1.04
LINC00339-202ENST00000416769 NRACQ8N912 160 aa8.55□□□□□ -1.04
LINC00339-202ENST00000416769 ATP6V0E2Q8NHE4 81 aa8.55□□□□□ -1.04
LINC00339-202ENST00000416769 PRELID3AQ96N28 172 aa8.55□□□□□ -1.04
LINC00339-202ENST00000416769 ST20Q9HBF5 79 aa8.55□□□□□ -1.04
LINC00339-202ENST00000416769 LAMTOR2Q9Y2Q5 125 aa8.55□□□□□ -1.04
LINC00339-202ENST00000416769 PRSS47A8MTI9 375 aa8.54□□□□□ -1.04
LINC00339-202ENST00000416769 IBA57-AS1B1ANH7 110 aa8.54□□□□□ -1.04
LINC00339-202ENST00000416769 TNFRSF6BO95407 300 aa8.54□□□□□ -1.04
LINC00339-202ENST00000416769 NCR2O95944 276 aa8.54□□□□□ -1.04
LINC00339-202ENST00000416769 POLR2KP53803 58 aaKnown RBP8.54□□□□□ -1.04
LINC00339-202ENST00000416769 KIAA1644Q3SXP7 199 aa8.54□□□□□ -1.04
LINC00339-202ENST00000416769 LINC01556Q5JQF7 62 aa8.54□□□□□ -1.04
LINC00339-202ENST00000416769 DAZ4Q86SG3 579 aaKnown RBP8.54□□□□□ -1.04
LINC00339-202ENST00000416769 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.54□□□□□ -1.04
LINC00339-202ENST00000416769 NTN5Q8WTR8 489 aaPredicted RBP8.54□□□□□ -1.04
LINC00339-202ENST00000416769 C20orf78Q9BR46 151 aa8.54□□□□□ -1.04
LINC00339-202ENST00000416769 DAZ3Q9NR90 486 aaKnown RBP8.54□□□□□ -1.04
LINC00339-202ENST00000416769 KRTAP29-1A8MX34 341 aaPredicted RBP8.53□□□□□ -1.04
LINC00339-202ENST00000416769 RPL32P62910 135 aaKnown RBP8.53□□□□□ -1.04
LINC00339-202ENST00000416769 C10orf126Q8N4M7 172 aa8.53□□□□□ -1.04
LINC00339-202ENST00000416769 ALKBH7Q9BT30 221 aaPredicted RBP8.53□□□□□ -1.04
LINC00339-202ENST00000416769 GTSF1LQ9H1H1 148 aa8.53□□□□□ -1.04
LINC00339-202ENST00000416769 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.52□□□□□ -1.05
LINC00339-202ENST00000416769 SDHAF1A6NFY7 115 aa8.52□□□□□ -1.05
LINC00339-202ENST00000416769 VCYO14598 125 aa8.52□□□□□ -1.05
LINC00339-202ENST00000416769 NPYP01303 97 aa8.52□□□□□ -1.05
LINC00339-202ENST00000416769 TIRAPP58753 221 aa8.52□□□□□ -1.05
LINC00339-202ENST00000416769 KRTAP10-4P60372 401 aaPredicted RBP8.52□□□□□ -1.05
LINC00339-202ENST00000416769 SUMO2P61956 95 aaKnown RBP8.52□□□□□ -1.05
LINC00339-202ENST00000416769 TMEM97Q5BJF2 176 aa8.52□□□□□ -1.05
LINC00339-202ENST00000416769 Q6ZSA8 131 aa8.52□□□□□ -1.05
LINC00339-202ENST00000416769 TRBV27A0A0K0K1C4 114 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms