RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 CT83Q5H943 113 aa12.46□□□□□ -0.41
SF3A1-202ENST00000411423 Q6ZSA8 131 aa12.46□□□□□ -0.41
SF3A1-202ENST00000411423 Q5VSD8 79 aa12.45□□□□□ -0.42
SF3A1-202ENST00000411423 TEX261Q6UWH6 196 aa12.45□□□□□ -0.42
SF3A1-202ENST00000411423 PKIAP61925 76 aa12.44□□□□□ -0.42
SF3A1-202ENST00000411423 TSKUQ8WUA8 353 aa12.44□□□□□ -0.42
SF3A1-202ENST00000411423 TMEM243Q9BU79 118 aa12.44□□□□□ -0.42
SF3A1-202ENST00000411423 OSTCQ9NRP0 149 aa12.44□□□□□ -0.42
SF3A1-202ENST00000411423 V9GYV3 84 aa12.44□□□□□ -0.42
SF3A1-202ENST00000411423 MIAQ16674 131 aa12.43□□□□□ -0.42
SF3A1-202ENST00000411423 ISOC2Q96AB3 205 aa12.43□□□□□ -0.42
SF3A1-202ENST00000411423 HIGD1CA8MV81 97 aa12.42□□□□□ -0.42
SF3A1-202ENST00000411423 HLA-DQA1P01909 254 aa12.42□□□□□ -0.42
SF3A1-202ENST00000411423 RPL23P62829 140 aaKnown RBP12.42□□□□□ -0.42
SF3A1-202ENST00000411423 RNF185Q96GF1 192 aa12.42□□□□□ -0.42
SF3A1-202ENST00000411423 USP17L23D6RBM5 183 aa12.41□□□□□ -0.42
SF3A1-202ENST00000411423 AMTP48728 403 aa12.41□□□□□ -0.42
SF3A1-202ENST00000411423 REG3AQ06141 175 aa12.41□□□□□ -0.42
SF3A1-202ENST00000411423 COTL1Q14019 142 aa12.41□□□□□ -0.42
SF3A1-202ENST00000411423 FRZBQ92765 325 aa12.41□□□□□ -0.42
SF3A1-202ENST00000411423 IGLV10-54A0A075B6I4 117 aa12.4□□□□□ -0.42
SF3A1-202ENST00000411423 A0A1B0GUV1 79 aa12.4□□□□□ -0.42
SF3A1-202ENST00000411423 PRSS1P07477 247 aa12.39□□□□□ -0.43
SF3A1-202ENST00000411423 TMEM241Q24JQ0 296 aa12.39□□□□□ -0.43
SF3A1-202ENST00000411423 SMIM15Q7Z3B0 74 aa12.39□□□□□ -0.43
SF3A1-202ENST00000411423 A0A1B0GUT8 65 aa12.38□□□□□ -0.43
SF3A1-202ENST00000411423 NUP35Q8NFH5 326 aa12.38□□□□□ -0.43
SF3A1-202ENST00000411423 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.37□□□□□ -0.43
SF3A1-202ENST00000411423 IGKV2-29A2NJV5 120 aaPredicted RBP12.37□□□□□ -0.43
SF3A1-202ENST00000411423 FAM231BA6NCW3 169 aa12.37□□□□□ -0.43
SF3A1-202ENST00000411423 SDHAF1A6NFY7 115 aa12.37□□□□□ -0.43
SF3A1-202ENST00000411423 RAB4AP20338 218 aa12.37□□□□□ -0.43
SF3A1-202ENST00000411423 RPS10P46783 165 aaKnown RBP12.37□□□□□ -0.43
SF3A1-202ENST00000411423 ADIRFQ15847 76 aa12.37□□□□□ -0.43
SF3A1-202ENST00000411423 FAM74A3Q4VXF1 159 aa12.37□□□□□ -0.43
SF3A1-202ENST00000411423 AMN1Q8IY45 258 aa12.37□□□□□ -0.43
SF3A1-202ENST00000411423 TMEM191AQ9H0A3 160 aa12.37□□□□□ -0.43
SF3A1-202ENST00000411423 MYCBP2O75592 4640 aa12.36□□□□□ -0.43
SF3A1-202ENST00000411423 TRBV6-5A0A0K0K1A5 114 aa12.36□□□□□ -0.43
SF3A1-202ENST00000411423 NAT8Q9UHE5 227 aa12.36□□□□□ -0.43
SF3A1-202ENST00000411423 SMKR1H3BMG3 65 aa12.35□□□□□ -0.43
SF3A1-202ENST00000411423 UBE2L6O14933 153 aa12.35□□□□□ -0.43
SF3A1-202ENST00000411423 INAFM2P0DMQ5 153 aa12.35□□□□□ -0.43
SF3A1-202ENST00000411423 PEA15Q15121 130 aa12.35□□□□□ -0.43
SF3A1-202ENST00000411423 SCXQ7RTU7 201 aa12.35□□□□□ -0.43
SF3A1-202ENST00000411423 BORCS7Q96B45 105 aa12.35□□□□□ -0.43
SF3A1-202ENST00000411423 SRRM2Q9UQ35 2752 aaKnown RBP12.35□□□□□ -0.43
SF3A1-202ENST00000411423 TSHBP01222 138 aa12.34□□□□□ -0.43
SF3A1-202ENST00000411423 C14orf177Q52M58 125 aa12.34□□□□□ -0.43
SF3A1-202ENST00000411423 HERC1Q15751 4861 aa12.33□□□□□ -0.43
SF3A1-202ENST00000411423 NCR2O95944 276 aa12.33□□□□□ -0.44
SF3A1-202ENST00000411423 TRAV8-4A0A0B4J246 113 aa12.32□□□□□ -0.44
SF3A1-202ENST00000411423 SMIM27A0A1W2PRY6 76 aa12.32□□□□□ -0.44
SF3A1-202ENST00000411423 APCSP02743 223 aa12.32□□□□□ -0.44
SF3A1-202ENST00000411423 POLR2KP53803 58 aaKnown RBP12.32□□□□□ -0.44
SF3A1-202ENST00000411423 TMEM242Q9NWH2 141 aa12.32□□□□□ -0.44
SF3A1-202ENST00000411423 FAM229AH3BQW9 127 aa12.31□□□□□ -0.44
SF3A1-202ENST00000411423 I3L3M4 83 aa12.31□□□□□ -0.44
SF3A1-202ENST00000411423 ESDP10768 282 aa12.31□□□□□ -0.44
SF3A1-202ENST00000411423 PMCHP20382 165 aa12.31□□□□□ -0.44
SF3A1-202ENST00000411423 RIGQ13278 110 aa12.31□□□□□ -0.44
SF3A1-202ENST00000411423 ST20Q9HBF5 79 aa12.31□□□□□ -0.44
SF3A1-202ENST00000411423 NAT8BQ9UHF3 227 aa12.31□□□□□ -0.44
SF3A1-202ENST00000411423 IGKV3OR2-268A0A0C4DH90 116 aa12.3□□□□□ -0.44
SF3A1-202ENST00000411423 SLPIP03973 132 aa12.3□□□□□ -0.44
SF3A1-202ENST00000411423 FGF6P10767 208 aa12.3□□□□□ -0.44
SF3A1-202ENST00000411423 NRACQ8N912 160 aa12.3□□□□□ -0.44
SF3A1-202ENST00000411423 CIRBP-AS1Q8TBR5 109 aa12.3□□□□□ -0.44
SF3A1-202ENST00000411423 MRAP2Q96G30 205 aa12.3□□□□□ -0.44
SF3A1-202ENST00000411423 CHAC1Q9BUX1 264 aa12.3□□□□□ -0.44
SF3A1-202ENST00000411423 SMDT1Q9H4I9 107 aa12.3□□□□□ -0.44
SF3A1-202ENST00000411423 RNASEKQ6P5S7 137 aaKnown RBP12.29□□□□□ -0.44
SF3A1-202ENST00000411423 LINC00528Q8N1L1 170 aa12.29□□□□□ -0.44
SF3A1-202ENST00000411423 TRBV27A0A0K0K1C4 114 aa12.28□□□□□ -0.44
SF3A1-202ENST00000411423 GAGE12HA6NDE8 117 aa12.28□□□□□ -0.44
SF3A1-202ENST00000411423 PANO1I0J062 215 aa12.28□□□□□ -0.44
SF3A1-202ENST00000411423 C9orf163Q8N9P6 203 aa12.28□□□□□ -0.44
SF3A1-202ENST00000411423 H7C423 109 aa12.27□□□□□ -0.45
SF3A1-202ENST00000411423 MRPL51Q4U2R6 128 aaKnown RBP12.27□□□□□ -0.45
SF3A1-202ENST00000411423 AMMECR1LQ6DCA0 310 aa12.27□□□□□ -0.45
SF3A1-202ENST00000411423 DGAT2L7PQ6IED9 249 aa12.27□□□□□ -0.45
SF3A1-202ENST00000411423 C15orf56Q8N910 161 aa12.27□□□□□ -0.45
SF3A1-202ENST00000411423 CAMPP49913 170 aa12.26□□□□□ -0.45
SF3A1-202ENST00000411423 KRTAP10-4P60372 401 aaPredicted RBP12.26□□□□□ -0.45
SF3A1-202ENST00000411423 FAM104BQ5XKR9 115 aa12.26□□□□□ -0.45
SF3A1-202ENST00000411423 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.26□□□□□ -0.45
SF3A1-202ENST00000411423 hDV102S1A0JD36 115 aa12.25□□□□□ -0.45
SF3A1-202ENST00000411423 CLRN3Q8NCR9 226 aa12.25□□□□□ -0.45
SF3A1-202ENST00000411423 CHCHD10Q8WYQ3 142 aaPredicted RBP12.25□□□□□ -0.45
SF3A1-202ENST00000411423 A0A1B0GXF2 115 aa12.24□□□□□ -0.45
SF3A1-202ENST00000411423 CNBPP62633 177 aaKnown RBP12.24□□□□□ -0.45
SF3A1-202ENST00000411423 MRPL54Q6P161 138 aaKnown RBP12.24□□□□□ -0.45
SF3A1-202ENST00000411423 SDIM1Q6ZPB5 146 aa12.24□□□□□ -0.45
SF3A1-202ENST00000411423 ZNF25P17030 456 aaPredicted RBP12.23□□□□□ -0.45
SF3A1-202ENST00000411423 OR5A1Q8NGJ0 315 aa12.23□□□□□ -0.45
SF3A1-202ENST00000411423 PKHD1L1Q86WI1 4243 aa12.22□□□□□ -0.45
SF3A1-202ENST00000411423 FLG2Q5D862 2391 aaPredicted RBP12.22□□□□□ -0.45
SF3A1-202ENST00000411423 SUMO2P61956 95 aaKnown RBP12.22□□□□□ -0.45
SF3A1-202ENST00000411423 FOXI1Q12951 378 aa12.22□□□□□ -0.45
SF3A1-202ENST00000411423 MRPL52Q86TS9 123 aaKnown RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 209.8 ms