RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 MALRD1Q5VYJ5 2156 aa5.56□□□□□ -1.52
SCN9A-202ENST00000409435 TRAV26-2A0A0B4J265 109 aa5.56□□□□□ -1.52
SCN9A-202ENST00000409435 Q6ZS49 121 aa5.56□□□□□ -1.52
SCN9A-202ENST00000409435 C11orf52Q96A22 123 aa5.56□□□□□ -1.52
SCN9A-202ENST00000409435 IGKV1D-8A0A087WSZ0 117 aa5.55□□□□□ -1.52
SCN9A-202ENST00000409435 CLEC2BQ92478 149 aa5.55□□□□□ -1.52
SCN9A-202ENST00000409435 CYYR1Q96J86 154 aa5.55□□□□□ -1.52
SCN9A-202ENST00000409435 PRO0255Q9UI72 69 aa5.55□□□□□ -1.52
SCN9A-202ENST00000409435 TRBV27A0A0K0K1C4 114 aa5.55□□□□□ -1.52
SCN9A-202ENST00000409435 PRR4Q16378 134 aa5.55□□□□□ -1.52
SCN9A-202ENST00000409435 MSMPQ1L6U9 139 aa5.55□□□□□ -1.52
SCN9A-202ENST00000409435 K7EN84 100 aa5.55□□□□□ -1.52
SCN9A-202ENST00000409435 ARFGEF3Q5TH69 2177 aa5.55□□□□□ -1.52
SCN9A-202ENST00000409435 FREM1Q5H8C1 2179 aa5.55□□□□□ -1.52
SCN9A-202ENST00000409435 AVPP01185 164 aa5.55□□□□□ -1.52
SCN9A-202ENST00000409435 IGLV1-47P01700 117 aa5.55□□□□□ -1.52
SCN9A-202ENST00000409435 FASNP49327 2511 aaKnown RBP5.55□□□□□ -1.52
SCN9A-202ENST00000409435 CAMK2N2Q96S95 79 aa5.54□□□□□ -1.52
SCN9A-202ENST00000409435 IGHV3-38A0A0C4DH36 116 aa5.54□□□□□ -1.52
SCN9A-202ENST00000409435 TCL1BO95988 128 aa5.54□□□□□ -1.52
SCN9A-202ENST00000409435 FAM19A5Q7Z5A7 132 aaPredicted RBP5.54□□□□□ -1.52
SCN9A-202ENST00000409435 ZNF524Q96C55 264 aa5.54□□□□□ -1.52
SCN9A-202ENST00000409435 MLANAQ16655 118 aa5.54□□□□□ -1.52
SCN9A-202ENST00000409435 YPEL4Q96NS1 127 aa5.54□□□□□ -1.52
SCN9A-202ENST00000409435 AGPAT4-IT1Q9H0P7 198 aa5.54□□□□□ -1.52
SCN9A-202ENST00000409435 H0Y9J4 135 aa5.54□□□□□ -1.52
SCN9A-202ENST00000409435 IGHV4-4A0A075B6R2 117 aa5.54□□□□□ -1.52
SCN9A-202ENST00000409435 FAM229AH3BQW9 127 aa5.54□□□□□ -1.52
SCN9A-202ENST00000409435 ENHOQ6UWT2 76 aa5.54□□□□□ -1.52
SCN9A-202ENST00000409435 FAM19A3Q7Z5A8 133 aa5.54□□□□□ -1.52
SCN9A-202ENST00000409435 TMEM263Q8WUH6 116 aaKnown RBP5.54□□□□□ -1.52
SCN9A-202ENST00000409435 GFI1Q99684 422 aa5.54□□□□□ -1.52
SCN9A-202ENST00000409435 PHF3Q92576 2039 aaKnown RBP5.53□□□□□ -1.52
SCN9A-202ENST00000409435 K7EQD1 137 aa5.53□□□□□ -1.52
SCN9A-202ENST00000409435 TDRG1Q3Y452 100 aa5.53□□□□□ -1.52
SCN9A-202ENST00000409435 H3BRN7 92 aa5.53□□□□□ -1.52
SCN9A-202ENST00000409435 IGLV11-55A0A075B6I3 123 aa5.53□□□□□ -1.52
SCN9A-202ENST00000409435 WI2-2373I1.2A0A1W2PRP0 233 aa5.53□□□□□ -1.52
SCN9A-202ENST00000409435 WT1-ASQ06250 92 aa5.52□□□□□ -1.53
SCN9A-202ENST00000409435 SNURFQ9Y675 71 aa5.52□□□□□ -1.53
SCN9A-202ENST00000409435 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.52□□□□□ -1.53
SCN9A-202ENST00000409435 IGLV5-52A0A0A0MRZ9 124 aa5.52□□□□□ -1.53
SCN9A-202ENST00000409435 LTAP01374 205 aa5.52□□□□□ -1.53
SCN9A-202ENST00000409435 RNASE13Q5GAN3 156 aaKnown RBP5.52□□□□□ -1.53
SCN9A-202ENST00000409435 Q6Q795 121 aa5.52□□□□□ -1.53
SCN9A-202ENST00000409435 ZNF581Q9P0T4 197 aa5.52□□□□□ -1.53
SCN9A-202ENST00000409435 RSPO1Q2MKA7 263 aaPredicted RBP5.52□□□□□ -1.53
SCN9A-202ENST00000409435 C9orf47Q6ZRZ4 202 aa5.52□□□□□ -1.53
SCN9A-202ENST00000409435 ANKHD1Q8IWZ3 2542 aaKnown RBP5.52□□□□□ -1.53
SCN9A-202ENST00000409435 E9PLD3 99 aa5.52□□□□□ -1.53
SCN9A-202ENST00000409435 TEX49A0A1B0GTD5 131 aa5.52□□□□□ -1.53
SCN9A-202ENST00000409435 RBAKDNA6NC62 111 aa5.52□□□□□ -1.53
SCN9A-202ENST00000409435 J3QRE1 110 aa5.52□□□□□ -1.53
SCN9A-202ENST00000409435 KLK12Q9UKR0 248 aa5.52□□□□□ -1.53
SCN9A-202ENST00000409435 IGKV2D-26A0A0A0MRZ7 120 aa5.51□□□□□ -1.53
SCN9A-202ENST00000409435 XCL1P47992 114 aa5.51□□□□□ -1.53
SCN9A-202ENST00000409435 ZNF726P1Q15940 193 aa5.51□□□□□ -1.53
SCN9A-202ENST00000409435 Q8N9L7 120 aa5.51□□□□□ -1.53
SCN9A-202ENST00000409435 RITA1Q96K30 269 aa5.51□□□□□ -1.53
SCN9A-202ENST00000409435 MRPL36Q9P0J6 103 aaKnown RBP5.51□□□□□ -1.53
SCN9A-202ENST00000409435 TMEM14CQ9P0S9 112 aa5.51□□□□□ -1.53
SCN9A-202ENST00000409435 KMT2EQ8IZD2 1858 aa5.51□□□□□ -1.53
SCN9A-202ENST00000409435 C10orf99Q6UWK7 81 aa5.51□□□□□ -1.53
SCN9A-202ENST00000409435 DIRC1Q969H9 104 aa5.51□□□□□ -1.53
SCN9A-202ENST00000409435 NCKAP5O14513 1909 aa5.51□□□□□ -1.53
SCN9A-202ENST00000409435 IGKV2-24A0A0C4DH68 120 aa5.51□□□□□ -1.53
SCN9A-202ENST00000409435 SPATA12Q7Z6I5 190 aa5.51□□□□□ -1.53
SCN9A-202ENST00000409435 KRTAP27-1Q3LI81 207 aa5.5□□□□□ -1.53
SCN9A-202ENST00000409435 LRRK2Q5S007 2527 aa5.5□□□□□ -1.53
SCN9A-202ENST00000409435 MED13LQ71F56 2210 aa5.5□□□□□ -1.53
SCN9A-202ENST00000409435 A0A1W2PPR1 153 aa5.5□□□□□ -1.53
SCN9A-202ENST00000409435 COX7A2LO14548 114 aa5.5□□□□□ -1.53
SCN9A-202ENST00000409435 BRI3O95415 125 aa5.5□□□□□ -1.53
SCN9A-202ENST00000409435 SPAG11BQ08648 103 aa5.5□□□□□ -1.53
SCN9A-202ENST00000409435 ABCA2Q9BZC7 2435 aa5.5□□□□□ -1.53
SCN9A-202ENST00000409435 IGLV10-54A0A075B6I4 117 aa5.49□□□□□ -1.53
SCN9A-202ENST00000409435 DAZ2Q13117 558 aaKnown RBP5.49□□□□□ -1.53
SCN9A-202ENST00000409435 DAZ4Q86SG3 579 aaKnown RBP5.49□□□□□ -1.53
SCN9A-202ENST00000409435 LINC00526Q96FQ7 95 aa5.49□□□□□ -1.53
SCN9A-202ENST00000409435 DAZ3Q9NR90 486 aaKnown RBP5.49□□□□□ -1.53
SCN9A-202ENST00000409435 CXCL6P80162 114 aa5.49□□□□□ -1.53
SCN9A-202ENST00000409435 B9D2Q9BPU9 175 aa5.49□□□□□ -1.53
SCN9A-202ENST00000409435 C11orf86A6NJI1 115 aa5.49□□□□□ -1.53
SCN9A-202ENST00000409435 PIK3CD-AS1Q5SR53 167 aa5.49□□□□□ -1.53
SCN9A-202ENST00000409435 KPRPQ5T749 579 aaPredicted RBP5.49□□□□□ -1.53
SCN9A-202ENST00000409435 C18orf65Q6ZTR6 163 aa5.49□□□□□ -1.53
SCN9A-202ENST00000409435 ASPHD1Q5U4P2 390 aa5.49□□□□□ -1.53
SCN9A-202ENST00000409435 SOSTDC1Q6X4U4 206 aa5.49□□□□□ -1.53
SCN9A-202ENST00000409435 NUPR1O60356 82 aa5.49□□□□□ -1.53
SCN9A-202ENST00000409435 CTSGP08311 255 aa5.49□□□□□ -1.53
SCN9A-202ENST00000409435 C10orf142B7Z368 130 aa5.48□□□□□ -1.53
SCN9A-202ENST00000409435 PROK1P58294 105 aa5.48□□□□□ -1.53
SCN9A-202ENST00000409435 FHL1Q13642 323 aa5.48□□□□□ -1.53
SCN9A-202ENST00000409435 EP400Q96L91 3159 aa5.48□□□□□ -1.53
SCN9A-202ENST00000409435 C2CD3Q4AC94 2353 aa5.48□□□□□ -1.53
SCN9A-202ENST00000409435 LINC00173Q6ZV60 143 aa5.48□□□□□ -1.53
SCN9A-202ENST00000409435 C17orf77Q96MU5 243 aa5.48□□□□□ -1.53
SCN9A-202ENST00000409435 IGKV1-6A0A0C4DH72 117 aa5.48□□□□□ -1.53
SCN9A-202ENST00000409435 A0A0G2JRQ6 117 aa5.48□□□□□ -1.53
SCN9A-202ENST00000409435 WFDC10AQ9H1F0 79 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms