RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 UQCC3Q6UW78 93 aa18.85■□□□□ 0.61
HMGB1-205ENST00000399494 CHCHD7Q9BUK0 85 aa18.85■□□□□ 0.61
HMGB1-205ENST00000399494 TM2D2Q9BX73 214 aa18.85■□□□□ 0.61
HMGB1-205ENST00000399494 J3QL48 77 aa18.84■□□□□ 0.61
HMGB1-205ENST00000399494 PPP1R2P9O14990 202 aa18.84■□□□□ 0.61
HMGB1-205ENST00000399494 PKIAP61925 76 aa18.84■□□□□ 0.61
HMGB1-205ENST00000399494 NTM-AS1Q6ZSK4 140 aa18.84■□□□□ 0.61
HMGB1-205ENST00000399494 IGHV1-24A0A0C4DH33 117 aa18.83■□□□□ 0.6
HMGB1-205ENST00000399494 RPL39LQ96EH5 51 aaKnown RBP18.83■□□□□ 0.6
HMGB1-205ENST00000399494 ELOBQ15370 118 aa18.82■□□□□ 0.6
HMGB1-205ENST00000399494 Q6ZSA8 131 aa18.82■□□□□ 0.6
HMGB1-205ENST00000399494 TRAV8-3A0A0A6YYJ7 113 aa18.81■□□□□ 0.6
HMGB1-205ENST00000399494 KLK12Q9UKR0 248 aa18.81■□□□□ 0.6
HMGB1-205ENST00000399494 AMN1Q8IY45 258 aa18.8■□□□□ 0.6
HMGB1-205ENST00000399494 MT-ND4LP03901 98 aa18.79■□□□□ 0.6
HMGB1-205ENST00000399494 PLA2G1BP04054 148 aaKnown RBP18.79■□□□□ 0.6
HMGB1-205ENST00000399494 RAB4AP20338 218 aa18.79■□□□□ 0.6
HMGB1-205ENST00000399494 CAMPP49913 170 aa18.79■□□□□ 0.6
HMGB1-205ENST00000399494 COTL1Q14019 142 aa18.79■□□□□ 0.6
HMGB1-205ENST00000399494 IQCJQ1A5X6 159 aa18.79■□□□□ 0.6
HMGB1-205ENST00000399494 COMMD7Q86VX2 200 aa18.79■□□□□ 0.6
HMGB1-205ENST00000399494 A0A1B0GW15 77 aa18.78■□□□□ 0.6
HMGB1-205ENST00000399494 GAGE6Q13070 117 aa18.78■□□□□ 0.6
HMGB1-205ENST00000399494 MPV17L2Q567V2 206 aa18.78■□□□□ 0.6
HMGB1-205ENST00000399494 DEFB104AQ8WTQ1 72 aa18.78■□□□□ 0.6
HMGB1-205ENST00000399494 ANAPC16Q96DE5 110 aa18.78■□□□□ 0.6
HMGB1-205ENST00000399494 MRAP2Q96G30 205 aa18.78■□□□□ 0.6
HMGB1-205ENST00000399494 RNF185Q96GF1 192 aa18.78■□□□□ 0.6
HMGB1-205ENST00000399494 F8W036 122 aa18.77■□□□□ 0.6
HMGB1-205ENST00000399494 TMEM243Q9BU79 118 aa18.77■□□□□ 0.6
HMGB1-205ENST00000399494 KRTAP29-1A8MX34 341 aaPredicted RBP18.76■□□□□ 0.59
HMGB1-205ENST00000399494 LECT2O14960 151 aa18.76■□□□□ 0.59
HMGB1-205ENST00000399494 S100A8P05109 93 aa18.76■□□□□ 0.59
HMGB1-205ENST00000399494 MRPL54Q6P161 138 aaKnown RBP18.76■□□□□ 0.59
HMGB1-205ENST00000399494 LINC00528Q8N1L1 170 aa18.76■□□□□ 0.59
HMGB1-205ENST00000399494 UBE2WQ96B02 151 aa18.76■□□□□ 0.59
HMGB1-205ENST00000399494 TMEM218A2RU14 115 aa18.75■□□□□ 0.59
HMGB1-205ENST00000399494 SDHAF1A6NFY7 115 aa18.75■□□□□ 0.59
HMGB1-205ENST00000399494 ANGP03950 147 aaKnown RBP18.75■□□□□ 0.59
HMGB1-205ENST00000399494 AMTP48728 403 aa18.75■□□□□ 0.59
HMGB1-205ENST00000399494 ATRAIDQ6UW56 229 aa18.75■□□□□ 0.59
HMGB1-205ENST00000399494 RMI2Q96E14 147 aa18.75■□□□□ 0.59
HMGB1-205ENST00000399494 UBE2L6O14933 153 aa18.74■□□□□ 0.59
HMGB1-205ENST00000399494 CRPP02741 224 aa18.74■□□□□ 0.59
HMGB1-205ENST00000399494 HBBP68871 147 aa18.74■□□□□ 0.59
HMGB1-205ENST00000399494 ST20Q9HBF5 79 aa18.74■□□□□ 0.59
HMGB1-205ENST00000399494 Q8N976 141 aa18.73■□□□□ 0.59
HMGB1-205ENST00000399494 IGLV2-33A0A075B6J2 118 aaPredicted RBP18.72■□□□□ 0.59
HMGB1-205ENST00000399494 TRBV6-5A0A0K0K1A5 114 aa18.72■□□□□ 0.59
HMGB1-205ENST00000399494 GAS8-AS1O95177 125 aa18.72■□□□□ 0.59
HMGB1-205ENST00000399494 ADCYAP1P18509 176 aa18.72■□□□□ 0.59
HMGB1-205ENST00000399494 SMKR1H3BMG3 65 aa18.71■□□□□ 0.59
HMGB1-205ENST00000399494 NCR2O95944 276 aa18.71■□□□□ 0.59
HMGB1-205ENST00000399494 PMCHP20382 165 aa18.71■□□□□ 0.59
HMGB1-205ENST00000399494 RBX1P62877 108 aa18.71■□□□□ 0.59
HMGB1-205ENST00000399494 Q0VG73 95 aa18.71■□□□□ 0.59
HMGB1-205ENST00000399494 FAM104BQ5XKR9 115 aa18.71■□□□□ 0.59
HMGB1-205ENST00000399494 BAALCQ8WXS3 180 aa18.71■□□□□ 0.59
HMGB1-205ENST00000399494 COX11Q9Y6N1 276 aa18.71■□□□□ 0.59
HMGB1-205ENST00000399494 IGKV2D-24A0A075B6R9 120 aa18.7■□□□□ 0.58
HMGB1-205ENST00000399494 RPS10P46783 165 aaKnown RBP18.7■□□□□ 0.58
HMGB1-205ENST00000399494 I3L3M4 83 aa18.69■□□□□ 0.58
HMGB1-205ENST00000399494 PPP1R17O96001 155 aa18.69■□□□□ 0.58
HMGB1-205ENST00000399494 APCSP02743 223 aa18.69■□□□□ 0.58
HMGB1-205ENST00000399494 LINC01620Q4KN68 170 aa18.69■□□□□ 0.58
HMGB1-205ENST00000399494 ATP5L2Q7Z4Y8 100 aa18.69■□□□□ 0.58
HMGB1-205ENST00000399494 SEC11CQ9BY50 192 aa18.69■□□□□ 0.58
HMGB1-205ENST00000399494 A0A1B0GXF2 115 aa18.68■□□□□ 0.58
HMGB1-205ENST00000399494 LINC00862A6NCI5 91 aa18.68■□□□□ 0.58
HMGB1-205ENST00000399494 MRPL51Q4U2R6 128 aaKnown RBP18.68■□□□□ 0.58
HMGB1-205ENST00000399494 CKS2P33552 79 aa18.65■□□□□ 0.58
HMGB1-205ENST00000399494 CLPSL2Q6UWE3 100 aa18.65■□□□□ 0.58
HMGB1-205ENST00000399494 ENHOQ6UWT2 76 aa18.65■□□□□ 0.58
HMGB1-205ENST00000399494 SCXQ7RTU7 201 aa18.65■□□□□ 0.58
HMGB1-205ENST00000399494 C1orf43Q9BWL3 253 aa18.65■□□□□ 0.58
HMGB1-205ENST00000399494 LINC00269Q8N2A0 174 aa18.64■□□□□ 0.57
HMGB1-205ENST00000399494 A0A1B0GUV1 79 aa18.63■□□□□ 0.57
HMGB1-205ENST00000399494 NRACQ8N912 160 aa18.63■□□□□ 0.57
HMGB1-205ENST00000399494 TMEM242Q9NWH2 141 aa18.63■□□□□ 0.57
HMGB1-205ENST00000399494 POLR2KP53803 58 aaKnown RBP18.62■□□□□ 0.57
HMGB1-205ENST00000399494 KRTAP10-4P60372 401 aaPredicted RBP18.62■□□□□ 0.57
HMGB1-205ENST00000399494 SUMO2P61956 95 aaKnown RBP18.62■□□□□ 0.57
HMGB1-205ENST00000399494 MIAQ16674 131 aa18.62■□□□□ 0.57
HMGB1-205ENST00000399494 AMMECR1LQ6DCA0 310 aa18.62■□□□□ 0.57
HMGB1-205ENST00000399494 TRBV27A0A0K0K1C4 114 aa18.61■□□□□ 0.57
HMGB1-205ENST00000399494 BTF3L4Q96K17 158 aa18.61■□□□□ 0.57
HMGB1-205ENST00000399494 CTDSP1Q9GZU7 261 aa18.61■□□□□ 0.57
HMGB1-205ENST00000399494 IGKV2D-29A0A075B6S2 120 aaPredicted RBP18.6■□□□□ 0.57
HMGB1-205ENST00000399494 IGKV2-29A2NJV5 120 aaPredicted RBP18.6■□□□□ 0.57
HMGB1-205ENST00000399494 D6R8Y8 96 aa18.6■□□□□ 0.57
HMGB1-205ENST00000399494 VCYO14598 125 aa18.6■□□□□ 0.57
HMGB1-205ENST00000399494 TSHBP01222 138 aa18.6■□□□□ 0.57
HMGB1-205ENST00000399494 C20orf203Q8NBC4 194 aa18.6■□□□□ 0.57
HMGB1-205ENST00000399494 CHAC1Q9BUX1 264 aa18.6■□□□□ 0.57
HMGB1-205ENST00000399494 PRR34Q9NV39 138 aa18.6■□□□□ 0.57
HMGB1-205ENST00000399494 IGLV4-60A0A075B6I1 120 aa18.59■□□□□ 0.57
HMGB1-205ENST00000399494 H7C423 109 aa18.59■□□□□ 0.57
HMGB1-205ENST00000399494 FCER1GP30273 86 aa18.59■□□□□ 0.57
HMGB1-205ENST00000399494 REG3AQ06141 175 aa18.59■□□□□ 0.57
HMGB1-205ENST00000399494 RNASEKQ6P5S7 137 aaKnown RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms