RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 NOTCH3Q9UM47 2321 aa6.54□□□□□ -1.36
TDP1-202ENST00000393452 GCSHP23434 173 aa6.54□□□□□ -1.36
TDP1-202ENST00000393452 AMMECR1LQ6DCA0 310 aa6.54□□□□□ -1.36
TDP1-202ENST00000393452 NFE4Q86UQ8 179 aa6.54□□□□□ -1.36
TDP1-202ENST00000393452 OR4C5Q8NGB2 326 aa6.54□□□□□ -1.36
TDP1-202ENST00000393452 ZNRF2Q8NHG8 242 aa6.54□□□□□ -1.36
TDP1-202ENST00000393452 C19orf73Q9NVV2 129 aa6.54□□□□□ -1.36
TDP1-202ENST00000393452 Q9UF83 564 aa6.54□□□□□ -1.36
TDP1-202ENST00000393452 TNFRSF18Q9Y5U5 241 aa6.54□□□□□ -1.36
TDP1-202ENST00000393452 GIG44P09565 113 aaPredicted RBP6.53□□□□□ -1.36
TDP1-202ENST00000393452 RNF151Q2KHN1 245 aa6.53□□□□□ -1.36
TDP1-202ENST00000393452 DNAJC30Q96LL9 226 aa6.53□□□□□ -1.36
TDP1-202ENST00000393452 OPRPNQ99935 248 aaPredicted RBP6.53□□□□□ -1.36
TDP1-202ENST00000393452 JMJD1CQ15652 2540 aa6.53□□□□□ -1.36
TDP1-202ENST00000393452 IGLV4-3A0A075B6K6 122 aa6.53□□□□□ -1.36
TDP1-202ENST00000393452 LY6G6DO95868 133 aa6.53□□□□□ -1.36
TDP1-202ENST00000393452 CRYBA4P53673 196 aa6.53□□□□□ -1.36
TDP1-202ENST00000393452 EMP1P54849 157 aa6.53□□□□□ -1.36
TDP1-202ENST00000393452 FAM104AQ969W3 186 aa6.53□□□□□ -1.36
TDP1-202ENST00000393452 TRBV7-3A0A075B6L6 115 aa6.52□□□□□ -1.37
TDP1-202ENST00000393452 HERVK_113P61574 105 aa6.52□□□□□ -1.37
TDP1-202ENST00000393452 TMEM263Q8WUH6 116 aaKnown RBP6.52□□□□□ -1.37
TDP1-202ENST00000393452 PHLDA1Q8WV24 401 aaPredicted RBP6.52□□□□□ -1.37
TDP1-202ENST00000393452 AMELXQ99217 191 aa6.52□□□□□ -1.37
TDP1-202ENST00000393452 CHCHD7Q9BUK0 85 aa6.52□□□□□ -1.37
TDP1-202ENST00000393452 IGHV3OR16-12A0A075B7B8 117 aa6.51□□□□□ -1.37
TDP1-202ENST00000393452 ZNF815PA8K554 130 aa6.51□□□□□ -1.37
TDP1-202ENST00000393452 SMIM13P0DJ93 91 aa6.51□□□□□ -1.37
TDP1-202ENST00000393452 KRTAP10-3P60369 221 aa6.51□□□□□ -1.37
TDP1-202ENST00000393452 NDUFA11Q86Y39 141 aa6.51□□□□□ -1.37
TDP1-202ENST00000393452 MAST4O15021 2626 aa6.51□□□□□ -1.37
TDP1-202ENST00000393452 H3BUT2 72 aa6.51□□□□□ -1.37
TDP1-202ENST00000393452 TMEM170BQ5T4T1 132 aa6.51□□□□□ -1.37
TDP1-202ENST00000393452 HIST1H4GQ99525 98 aa6.51□□□□□ -1.37
TDP1-202ENST00000393452 VCX2Q9H322 139 aa6.51□□□□□ -1.37
TDP1-202ENST00000393452 OTOGQ6ZRI0 2925 aa6.51□□□□□ -1.37
TDP1-202ENST00000393452 DAZ2Q13117 558 aaKnown RBP6.5□□□□□ -1.37
TDP1-202ENST00000393452 RAB37Q96AX2 223 aa6.5□□□□□ -1.37
TDP1-202ENST00000393452 WFDC10AQ9H1F0 79 aa6.5□□□□□ -1.37
TDP1-202ENST00000393452 SPANXA1Q9NS26 97 aa6.5□□□□□ -1.37
TDP1-202ENST00000393452 TRGV1A0A0A0MS02 117 aa6.5□□□□□ -1.37
TDP1-202ENST00000393452 TMEM223A0PJW6 202 aa6.5□□□□□ -1.37
TDP1-202ENST00000393452 PLAC8L1A1L4L8 177 aa6.5□□□□□ -1.37
TDP1-202ENST00000393452 TSPEAR-AS2P59090 65 aa6.5□□□□□ -1.37
TDP1-202ENST00000393452 CSNK1G2-AS1Q8NCQ2 148 aa6.5□□□□□ -1.37
TDP1-202ENST00000393452 PLEKHB2Q96CS7 222 aa6.5□□□□□ -1.37
TDP1-202ENST00000393452 FN1P02751 2386 aaKnown RBP6.49□□□□□ -1.37
TDP1-202ENST00000393452 C2CD3Q4AC94 2353 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 A0A1B0GWB2 263 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 A0A1W2PPM0 123 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 K7ERJ3 54 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 ZNF22P17026 224 aaPredicted RBP6.49□□□□□ -1.37
TDP1-202ENST00000393452 MRPS36P82909 103 aaKnown RBP6.49□□□□□ -1.37
TDP1-202ENST00000393452 OCIAD2Q56VL3 154 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 Q6ZTI0 123 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 ZNF479Q96JC4 524 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 C1QTNF4Q9BXJ3 329 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 NHP2Q9NX24 153 aaKnown RBP6.49□□□□□ -1.37
TDP1-202ENST00000393452 UBE2D4Q9Y2X8 147 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 TRAV4A0A0B4J268 109 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 A0A0J9YXV3 536 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 TRBV10-1A0A0K0K1A3 114 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 GAGE10A6NGK3 116 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 LINC00482Q8N8I6 264 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 OR5A1Q8NGJ0 315 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 C16orf74Q96GX8 76 aa6.49□□□□□ -1.37
TDP1-202ENST00000393452 NAA38Q9BRA0 125 aaKnown RBP6.49□□□□□ -1.37
TDP1-202ENST00000393452 A0A0J9YY99 117 aa6.48□□□□□ -1.37
TDP1-202ENST00000393452 J3QQQ9 107 aa6.48□□□□□ -1.37
TDP1-202ENST00000393452 K7EP34 96 aa6.48□□□□□ -1.37
TDP1-202ENST00000393452 C12orf74Q32Q52 190 aa6.48□□□□□ -1.37
TDP1-202ENST00000393452 CEMP1Q6PRD7 247 aaPredicted RBP6.48□□□□□ -1.37
TDP1-202ENST00000393452 SCGB1D4Q6XE38 83 aa6.48□□□□□ -1.37
TDP1-202ENST00000393452 GTF2H5Q6ZYL4 71 aa6.48□□□□□ -1.37
TDP1-202ENST00000393452 VPS25Q9BRG1 176 aa6.48□□□□□ -1.37
TDP1-202ENST00000393452 LEPROTO15243 131 aa6.47□□□□□ -1.37
TDP1-202ENST00000393452 RPL35AP18077 110 aaKnown RBP6.47□□□□□ -1.37
TDP1-202ENST00000393452 SAMD5Q5TGI4 173 aa6.47□□□□□ -1.37
TDP1-202ENST00000393452 SPANXB1Q9NS25 103 aaPredicted RBP6.47□□□□□ -1.37
TDP1-202ENST00000393452 IGHV3-38A0A0C4DH36 116 aa6.47□□□□□ -1.37
TDP1-202ENST00000393452 OVOL2Q9BRP0 275 aa6.47□□□□□ -1.37
TDP1-202ENST00000393452 TIMM21Q9BVV7 248 aa6.47□□□□□ -1.37
TDP1-202ENST00000393452 NOP10Q9NPE3 64 aaKnown RBP6.47□□□□□ -1.37
TDP1-202ENST00000393452 NIPBLQ6KC79 2804 aaeCLIP6.46□□□□□ -1.37
TDP1-202ENST00000393452 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.46□□□□□ -1.37
TDP1-202ENST00000393452 IGKV2-29A2NJV5 120 aaPredicted RBP6.46□□□□□ -1.37
TDP1-202ENST00000393452 INAFM1C9JVW0 142 aa6.46□□□□□ -1.37
TDP1-202ENST00000393452 K7EQD1 137 aa6.46□□□□□ -1.37
TDP1-202ENST00000393452 FABP2P12104 132 aa6.46□□□□□ -1.37
TDP1-202ENST00000393452 SLC25A29Q8N8R3 303 aa6.46□□□□□ -1.37
TDP1-202ENST00000393452 GAGE12BA1L429 117 aa6.46□□□□□ -1.38
TDP1-202ENST00000393452 IGLL5B9A064 214 aa6.46□□□□□ -1.38
TDP1-202ENST00000393452 PF4P02776 101 aa6.46□□□□□ -1.38
TDP1-202ENST00000393452 LGALS3P17931 250 aaKnown RBP6.46□□□□□ -1.38
TDP1-202ENST00000393452 NSD1Q96L73 2696 aaPredicted RBP6.46□□□□□ -1.38
TDP1-202ENST00000393452 TINCRA0A1B0GVN0 87 aa6.45□□□□□ -1.38
TDP1-202ENST00000393452 UBE2D1P51668 147 aa6.45□□□□□ -1.38
TDP1-202ENST00000393452 RPL36AP83881 106 aaKnown RBP6.45□□□□□ -1.38
TDP1-202ENST00000393452 SRSF9Q13242 221 aaKnown RBP eCLIP6.45□□□□□ -1.38
TDP1-202ENST00000393452 RRN3P1Q2M238 152 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms