RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 C20orf78Q9BR46 151 aa9.08□□□□□ -0.96
CIITA-202ENST00000381835 PHLDA3Q9Y5J5 127 aa9.08□□□□□ -0.96
CIITA-202ENST00000381835 MGPP08493 103 aa9.08□□□□□ -0.96
CIITA-202ENST00000381835 ASIPP42127 132 aa9.08□□□□□ -0.96
CIITA-202ENST00000381835 ANXA2RQ3ZCQ2 193 aa9.08□□□□□ -0.96
CIITA-202ENST00000381835 ETDBQ3ZM63 59 aa9.08□□□□□ -0.96
CIITA-202ENST00000381835 GAGE12HA6NDE8 117 aa9.07□□□□□ -0.96
CIITA-202ENST00000381835 RPL35AP18077 110 aaKnown RBP9.07□□□□□ -0.96
CIITA-202ENST00000381835 C2orf66Q6UXQ4 117 aa9.07□□□□□ -0.96
CIITA-202ENST00000381835 WIPF1O43516 503 aa9.06□□□□□ -0.96
CIITA-202ENST00000381835 FAM159AQ6UWV7 190 aa9.06□□□□□ -0.96
CIITA-202ENST00000381835 BAALCQ8WXS3 180 aa9.06□□□□□ -0.96
CIITA-202ENST00000381835 XCL2Q9UBD3 114 aa9.06□□□□□ -0.96
CIITA-202ENST00000381835 A0A1B0GWB2 263 aa9.06□□□□□ -0.96
CIITA-202ENST00000381835 GNRH2O43555 120 aa9.06□□□□□ -0.96
CIITA-202ENST00000381835 RBMY1A1P0DJD3 496 aaKnown RBP9.06□□□□□ -0.96
CIITA-202ENST00000381835 RBMY1CP0DJD4 496 aa9.06□□□□□ -0.96
CIITA-202ENST00000381835 SMAGPQ0VAQ4 97 aa9.06□□□□□ -0.96
CIITA-202ENST00000381835 RBMY1FQ15415 496 aaKnown RBP9.06□□□□□ -0.96
CIITA-202ENST00000381835 PRADC1Q9BSG0 188 aa9.05□□□□□ -0.96
CIITA-202ENST00000381835 PRSS29PA6NIE9 313 aa9.05□□□□□ -0.96
CIITA-202ENST00000381835 ZNF815PA8K554 130 aa9.05□□□□□ -0.96
CIITA-202ENST00000381835 HTN1P15515 57 aa9.05□□□□□ -0.96
CIITA-202ENST00000381835 SCGB1D4Q6XE38 83 aa9.05□□□□□ -0.96
CIITA-202ENST00000381835 INSP01308 110 aa9.04□□□□□ -0.96
CIITA-202ENST00000381835 MORN3Q6PF18 240 aaPredicted RBP9.04□□□□□ -0.96
CIITA-202ENST00000381835 MRPL16Q9NX20 251 aaKnown RBP9.04□□□□□ -0.96
CIITA-202ENST00000381835 PRO0461Q9UI25 63 aa9.04□□□□□ -0.96
CIITA-202ENST00000381835 IGHV1OR15-1A0A075B7D0 117 aa9.03□□□□□ -0.96
CIITA-202ENST00000381835 TSPAN13O95857 204 aa9.03□□□□□ -0.96
CIITA-202ENST00000381835 SRSF9Q13242 221 aaKnown RBP eCLIP9.03□□□□□ -0.96
CIITA-202ENST00000381835 Q8N1Y9 231 aa9.03□□□□□ -0.96
CIITA-202ENST00000381835 SPXQ9BT56 116 aa9.03□□□□□ -0.96
CIITA-202ENST00000381835 PPP1R17O96001 155 aa9.03□□□□□ -0.96
CIITA-202ENST00000381835 PRM2P04554 102 aa9.03□□□□□ -0.96
CIITA-202ENST00000381835 MED14OSP0DP75 135 aa9.03□□□□□ -0.96
CIITA-202ENST00000381835 LINC01587Q99440 93 aa9.03□□□□□ -0.96
CIITA-202ENST00000381835 SPATA25Q9BR10 227 aa9.03□□□□□ -0.96
CIITA-202ENST00000381835 MUC4Q99102 2169 aa9.02□□□□□ -0.96
CIITA-202ENST00000381835 IGHV3OR16-12A0A075B7B8 117 aa9.02□□□□□ -0.97
CIITA-202ENST00000381835 PLEKHB2Q96CS7 222 aa9.02□□□□□ -0.97
CIITA-202ENST00000381835 NOTCH1P46531 2555 aa9.02□□□□□ -0.97
CIITA-202ENST00000381835 LINC01549A6NIU2 74 aa9.02□□□□□ -0.97
CIITA-202ENST00000381835 GIG44P09565 113 aaPredicted RBP9.02□□□□□ -0.97
CIITA-202ENST00000381835 RNASE3P12724 160 aaKnown RBP9.02□□□□□ -0.97
CIITA-202ENST00000381835 KRTAP10-11P60412 298 aa9.02□□□□□ -0.97
CIITA-202ENST00000381835 GEMIN7Q9H840 131 aaKnown RBP9.02□□□□□ -0.97
CIITA-202ENST00000381835 APOMO95445 188 aa9.01□□□□□ -0.97
CIITA-202ENST00000381835 MDFICQ9P1T7 246 aa9□□□□□ -0.97
CIITA-202ENST00000381835 LOC107984156A0A0G2JMH3 177 aa9□□□□□ -0.97
CIITA-202ENST00000381835 CRYGDP07320 174 aa9□□□□□ -0.97
CIITA-202ENST00000381835 ARL17AQ8IVW1 177 aa9□□□□□ -0.97
CIITA-202ENST00000381835 C1orf158Q8N1D5 194 aa9□□□□□ -0.97
CIITA-202ENST00000381835 TP53TG1Q9Y2A0 90 aa9□□□□□ -0.97
CIITA-202ENST00000381835 IGHV3-16A0A0C4DH30 117 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 PSMB2P49721 201 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 EMP1P54849 157 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 HERVK_113P61574 105 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 SFTA2Q6UW10 78 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 DEFB104AQ8WTQ1 72 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 C1QTNF4Q9BXJ3 329 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 NBEAL2Q6ZNJ1 2754 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 MGAM2Q2M2H8 2515 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 C11orf86A6NJI1 115 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 UBE2D1P51668 147 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 EGFEM1PQ0D2K5 195 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 PAPPA-AS1Q5QFB9 102 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 CFAP126Q5VTH2 177 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 TNFRSF18Q9Y5U5 241 aa8.99□□□□□ -0.97
CIITA-202ENST00000381835 TRGV11A0A075B6L2 103 aa8.98□□□□□ -0.97
CIITA-202ENST00000381835 NBEAL1Q6ZS30 2694 aa8.98□□□□□ -0.97
CIITA-202ENST00000381835 IGLV4-69A0A075B6H9 119 aa8.98□□□□□ -0.97
CIITA-202ENST00000381835 TSHBP01222 138 aa8.98□□□□□ -0.97
CIITA-202ENST00000381835 HERV-K104P63124 156 aa8.98□□□□□ -0.97
CIITA-202ENST00000381835 FOXI1Q12951 378 aa8.98□□□□□ -0.97
CIITA-202ENST00000381835 PMVKQ15126 192 aa8.98□□□□□ -0.97
CIITA-202ENST00000381835 ZFP2Q6ZN57 461 aa8.98□□□□□ -0.97
CIITA-202ENST00000381835 POM121L12Q8N7R1 296 aa8.98□□□□□ -0.97
CIITA-202ENST00000381835 KIF25-AS1Q9Y6Z4 181 aa8.98□□□□□ -0.97
CIITA-202ENST00000381835 IGHV4-30-4P0DP06 118 aa8.97□□□□□ -0.97
CIITA-202ENST00000381835 CSNK1G2-AS1Q8NCQ2 148 aa8.97□□□□□ -0.97
CIITA-202ENST00000381835 KIR2DL4Q99706 377 aa8.97□□□□□ -0.97
CIITA-202ENST00000381835 A0A0J9YY99 117 aa8.97□□□□□ -0.97
CIITA-202ENST00000381835 IGIPA6NJ69 53 aa8.97□□□□□ -0.97
CIITA-202ENST00000381835 F5H697 171 aa8.97□□□□□ -0.97
CIITA-202ENST00000381835 SMCPP49901 116 aaPredicted RBP8.97□□□□□ -0.97
CIITA-202ENST00000381835 LINC00315P59091 139 aa8.97□□□□□ -0.97
CIITA-202ENST00000381835 SUMO4Q6EEV6 95 aa8.97□□□□□ -0.97
CIITA-202ENST00000381835 JPT2Q9H910 190 aa8.97□□□□□ -0.97
CIITA-202ENST00000381835 DNAH3Q8TD57 4116 aa8.96□□□□□ -0.97
CIITA-202ENST00000381835 VCYO14598 125 aa8.96□□□□□ -0.97
CIITA-202ENST00000381835 NXPH4O95158 308 aa8.96□□□□□ -0.97
CIITA-202ENST00000381835 RPL39P62891 51 aaKnown RBP8.96□□□□□ -0.97
CIITA-202ENST00000381835 RPL32P62910 135 aaKnown RBP8.96□□□□□ -0.97
CIITA-202ENST00000381835 TMEM170BQ5T4T1 132 aa8.96□□□□□ -0.97
CIITA-202ENST00000381835 LYRM7Q5U5X0 104 aa8.96□□□□□ -0.97
CIITA-202ENST00000381835 ATP6V0E2Q8NHE4 81 aa8.96□□□□□ -0.97
CIITA-202ENST00000381835 TMEM141Q96I45 108 aa8.96□□□□□ -0.97
CIITA-202ENST00000381835 C9orf85Q96MD7 179 aa8.96□□□□□ -0.97
CIITA-202ENST00000381835 A0A087WWL8 130 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms