RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 TMED6Q8WW62 240 aa5.32□□□□□ -1.56
HMGB1P39-201ENST00000366304 ISOC2Q96AB3 205 aa5.32□□□□□ -1.56
HMGB1P39-201ENST00000366304 RMI2Q96E14 147 aa5.32□□□□□ -1.56
HMGB1P39-201ENST00000366304 SAMD10Q9BYL1 202 aa5.32□□□□□ -1.56
HMGB1P39-201ENST00000366304 WFDC1Q9HC57 220 aa5.32□□□□□ -1.56
HMGB1P39-201ENST00000366304 TMEM14CQ9P0S9 112 aa5.32□□□□□ -1.56
HMGB1P39-201ENST00000366304 LSM5Q9Y4Y9 91 aaKnown RBP5.32□□□□□ -1.56
HMGB1P39-201ENST00000366304 TIMM9Q9Y5J7 89 aa5.32□□□□□ -1.56
HMGB1P39-201ENST00000366304 TRBV7-9A0A0J9YWB2 115 aa5.31□□□□□ -1.56
HMGB1P39-201ENST00000366304 SCGB1D1O95968 90 aa5.31□□□□□ -1.56
HMGB1P39-201ENST00000366304 TRGC2P03986 189 aa5.31□□□□□ -1.56
HMGB1P39-201ENST00000366304 OR10J4P0C629 311 aa5.31□□□□□ -1.56
HMGB1P39-201ENST00000366304 CAMLGP49069 296 aa5.31□□□□□ -1.56
HMGB1P39-201ENST00000366304 RAB32Q13637 225 aa5.31□□□□□ -1.56
HMGB1P39-201ENST00000366304 FAM159AQ6UWV7 190 aa5.31□□□□□ -1.56
HMGB1P39-201ENST00000366304 FAM167A-AS1Q96KT0 104 aa5.31□□□□□ -1.56
HMGB1P39-201ENST00000366304 SLC25A2Q9BXI2 301 aa5.31□□□□□ -1.56
HMGB1P39-201ENST00000366304 DPH3P1Q9H4G8 78 aa5.31□□□□□ -1.56
HMGB1P39-201ENST00000366304 UQCR10Q9UDW1 63 aa5.31□□□□□ -1.56
HMGB1P39-201ENST00000366304 PRR3P79522 188 aaKnown RBP5.3□□□□□ -1.56
HMGB1P39-201ENST00000366304 PDE6HQ13956 83 aa5.3□□□□□ -1.56
HMGB1P39-201ENST00000366304 LRRC37A5PQ49AS3 106 aa5.3□□□□□ -1.56
HMGB1P39-201ENST00000366304 FFAR4Q5NUL3 377 aa5.3□□□□□ -1.56
HMGB1P39-201ENST00000366304 KRTAP26-1Q6PEX3 210 aa5.3□□□□□ -1.56
HMGB1P39-201ENST00000366304 Q6ZRG5 221 aa5.3□□□□□ -1.56
HMGB1P39-201ENST00000366304 CYB561D1Q8N8Q1 229 aa5.3□□□□□ -1.56
HMGB1P39-201ENST00000366304 CST9LQ9H4G1 147 aa5.3□□□□□ -1.56
HMGB1P39-201ENST00000366304 C11orf1Q9H5F2 150 aa5.3□□□□□ -1.56
HMGB1P39-201ENST00000366304 C11orf21Q9P2W6 132 aa5.3□□□□□ -1.56
HMGB1P39-201ENST00000366304 MUC21A0A0G2JKD1 596 aa5.29□□□□□ -1.56
HMGB1P39-201ENST00000366304 PGPEP1LA6NFU8 196 aa5.29□□□□□ -1.56
HMGB1P39-201ENST00000366304 SMIM17P0DL12 118 aa5.29□□□□□ -1.56
HMGB1P39-201ENST00000366304 ZNF876PQ49A33 203 aa5.29□□□□□ -1.56
HMGB1P39-201ENST00000366304 C14orf177Q52M58 125 aa5.29□□□□□ -1.56
HMGB1P39-201ENST00000366304 TEX43Q6ZNM6 134 aa5.29□□□□□ -1.56
HMGB1P39-201ENST00000366304 C14orf178Q8N769 122 aaPredicted RBP5.29□□□□□ -1.56
HMGB1P39-201ENST00000366304 SPACA4Q8TDM5 124 aa5.29□□□□□ -1.56
HMGB1P39-201ENST00000366304 ZC2HC1AQ96GY0 325 aa5.29□□□□□ -1.56
HMGB1P39-201ENST00000366304 SLC39A9Q9NUM3 307 aa5.29□□□□□ -1.56
HMGB1P39-201ENST00000366304 NAT8Q9UHE5 227 aa5.29□□□□□ -1.56
HMGB1P39-201ENST00000366304 KRTAP23-1A1A580 65 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 IGSF23A1L1A6 192 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 FAM24AA6NFZ4 105 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 CST7O76096 145 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 HBG1P69891 147 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 HBG2P69892 147 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 ZNF506Q5JVG8 444 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 DGAT2L7PQ6IED9 249 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 MIR17HGQ75NE6 70 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 TMEM252Q8N6L7 170 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 OR1L4Q8NGR5 311 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 FXYD5Q96DB9 178 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 VAMP8Q9BV40 100 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 AAMDCQ9H7C9 122 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 PLAC8Q9NZF1 115 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 WDR83OSQ9Y284 106 aa5.28□□□□□ -1.56
HMGB1P39-201ENST00000366304 FSIP2Q5CZC0 6907 aa5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 MAP1LC3B2A6NCE7 125 aa5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 C9JQL5 133 aa5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 H0YIZ8 118 aa5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 OR7C2O60412 319 aa5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 HLA-DQA1P01909 254 aa5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 CXCL1P09341 107 aa5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 MGST1P10620 155 aaKnown RBP5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 SRSF9Q13242 221 aaKnown RBP eCLIP5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 UFSP1Q6NVU6 142 aa5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 LINC00479Q96M42 142 aa5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 C9orf85Q96MD7 179 aa5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 MAP1LC3BQ9GZQ8 125 aa5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 JPT2Q9H910 190 aa5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 LAMTOR2Q9Y2Q5 125 aa5.27□□□□□ -1.57
HMGB1P39-201ENST00000366304 RBAKDNA6NC62 111 aa5.26□□□□□ -1.57
HMGB1P39-201ENST00000366304 SRP19P09132 144 aaKnown RBP5.26□□□□□ -1.57
HMGB1P39-201ENST00000366304 ESDP10768 282 aa5.26□□□□□ -1.57
HMGB1P39-201ENST00000366304 ZNF80P51504 273 aaPredicted RBP5.26□□□□□ -1.57
HMGB1P39-201ENST00000366304 BAXQ07812 192 aa5.26□□□□□ -1.57
HMGB1P39-201ENST00000366304 RAB31Q13636 194 aa5.26□□□□□ -1.57
HMGB1P39-201ENST00000366304 PDZD11Q5EBL8 140 aa5.26□□□□□ -1.57
HMGB1P39-201ENST00000366304 TMEM75Q8N9X5 138 aa5.26□□□□□ -1.57
HMGB1P39-201ENST00000366304 SFRP2Q96HF1 295 aa5.26□□□□□ -1.57
HMGB1P39-201ENST00000366304 C1orf43Q9BWL3 253 aa5.26□□□□□ -1.57
HMGB1P39-201ENST00000366304 PARLQ9H300 379 aa5.26□□□□□ -1.57
HMGB1P39-201ENST00000366304 CRCT1Q9UGL9 99 aa5.26□□□□□ -1.57
HMGB1P39-201ENST00000366304 URGCP-MRPS24S4R325 110 aa5.26□□□□□ -1.57
HMGB1P39-201ENST00000366304 UBE2L5PA0A1B0GUS4 154 aa5.25□□□□□ -1.57
HMGB1P39-201ENST00000366304 DIRC3C9JPN6 131 aa5.25□□□□□ -1.57
HMGB1P39-201ENST00000366304 J3QR89 54 aa5.25□□□□□ -1.57
HMGB1P39-201ENST00000366304 HMGB3O15347 200 aaKnown RBP5.25□□□□□ -1.57
HMGB1P39-201ENST00000366304 STAG3L2P0CL84 134 aa5.25□□□□□ -1.57
HMGB1P39-201ENST00000366304 RNASE3P12724 160 aaKnown RBP5.25□□□□□ -1.57
HMGB1P39-201ENST00000366304 RPL12P30050 165 aaKnown RBP5.25□□□□□ -1.57
HMGB1P39-201ENST00000366304 VAMP3Q15836 100 aa5.25□□□□□ -1.57
HMGB1P39-201ENST00000366304 OR5C1Q8NGR4 320 aa5.25□□□□□ -1.57
HMGB1P39-201ENST00000366304 RNF185Q96GF1 192 aa5.25□□□□□ -1.57
HMGB1P39-201ENST00000366304 SIGMAR1Q99720 223 aa5.25□□□□□ -1.57
HMGB1P39-201ENST00000366304 SDF2L1Q9HCN8 221 aa5.25□□□□□ -1.57
HMGB1P39-201ENST00000366304 LENEPQ9Y5L5 61 aa5.25□□□□□ -1.57
HMGB1P39-201ENST00000366304 A0A087WX48 190 aa5.24□□□□□ -1.57
HMGB1P39-201ENST00000366304 TRAV1-1A0A0B4J248 108 aa5.24□□□□□ -1.57
HMGB1P39-201ENST00000366304 CNBPP62633 177 aaKnown RBP5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms