RNA–Protein interactions for RNA: ENST00000357732.8

RTN4-204, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,390 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-204ENST00000357732 RBMY1CP0DJD4 496 aa12.93□□□□□ -0.34
RTN4-204ENST00000357732 RBMY1FQ15415 496 aaKnown RBP12.93□□□□□ -0.34
RTN4-204ENST00000357732 UBE2D4Q9Y2X8 147 aa12.93□□□□□ -0.34
RTN4-204ENST00000357732 CSMD2Q7Z408 3487 aa12.93□□□□□ -0.34
RTN4-204ENST00000357732 ZFAND6Q6FIF0 208 aa12.93□□□□□ -0.34
RTN4-204ENST00000357732 VPREB3Q9UKI3 123 aa12.93□□□□□ -0.34
RTN4-204ENST00000357732 TRIAP1O43715 76 aa12.92□□□□□ -0.34
RTN4-204ENST00000357732 CHCHD7Q9BUK0 85 aa12.92□□□□□ -0.34
RTN4-204ENST00000357732 H3BT86 120 aa12.92□□□□□ -0.34
RTN4-204ENST00000357732 H7C2G1 150 aa12.92□□□□□ -0.34
RTN4-204ENST00000357732 CITED1Q99966 193 aa12.92□□□□□ -0.34
RTN4-204ENST00000357732 H3BMM0 161 aa12.91□□□□□ -0.34
RTN4-204ENST00000357732 TEX29Q8N6K0 151 aa12.91□□□□□ -0.34
RTN4-204ENST00000357732 ICOSQ9Y6W8 199 aa12.91□□□□□ -0.34
RTN4-204ENST00000357732 FLNCQ14315 2725 aa12.91□□□□□ -0.34
RTN4-204ENST00000357732 NTN5Q8WTR8 489 aaPredicted RBP12.9□□□□□ -0.34
RTN4-204ENST00000357732 DUX5Q96PT3 197 aa12.9□□□□□ -0.34
RTN4-204ENST00000357732 DUX3Q96PT4 197 aa12.9□□□□□ -0.34
RTN4-204ENST00000357732 UTP20O75691 2785 aaKnown RBP12.9□□□□□ -0.34
RTN4-204ENST00000357732 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.9□□□□□ -0.343e-9■■■■■ 96.9
RTN4-204ENST00000357732 TRAV8-3A0A0A6YYJ7 113 aa12.89□□□□□ -0.35
RTN4-204ENST00000357732 PRSS2P07478 247 aa12.89□□□□□ -0.35
RTN4-204ENST00000357732 TIRAPP58753 221 aa12.89□□□□□ -0.35
RTN4-204ENST00000357732 MAPK1IP1LQ8NDC0 245 aa12.89□□□□□ -0.35
RTN4-204ENST00000357732 IGLV5-45A0A087WSX0 123 aa12.89□□□□□ -0.35
RTN4-204ENST00000357732 IGHV3-53P01767 116 aa12.89□□□□□ -0.35
RTN4-204ENST00000357732 DEFB131AP59861 70 aa12.88□□□□□ -0.35
RTN4-204ENST00000357732 BEAN1Q3B7T3 259 aa12.88□□□□□ -0.35
RTN4-204ENST00000357732 Q6Q795 121 aa12.88□□□□□ -0.35
RTN4-204ENST00000357732 TRAV26-1A0A087WT03 109 aa12.88□□□□□ -0.35
RTN4-204ENST00000357732 KNCNA6PVL3 124 aa12.88□□□□□ -0.35
RTN4-204ENST00000357732 TMEM61Q8N0U2 210 aa12.88□□□□□ -0.35
RTN4-204ENST00000357732 ZNF702PQ9H963 129 aa12.88□□□□□ -0.35
RTN4-204ENST00000357732 CSPG4Q6UVK1 2322 aa12.87□□□□□ -0.35
RTN4-204ENST00000357732 SNCGO76070 127 aa12.87□□□□□ -0.35
RTN4-204ENST00000357732 ADAMTSL4-AS1Q5T5F5 129 aa12.87□□□□□ -0.35
RTN4-204ENST00000357732 UBE2WQ96B02 151 aa12.87□□□□□ -0.35
RTN4-204ENST00000357732 PEMTQ9UBM1 199 aa12.87□□□□□ -0.35
RTN4-204ENST00000357732 IGHV3-73A0A0B4J1V6 119 aa12.87□□□□□ -0.35
RTN4-204ENST00000357732 NDUFA1O15239 70 aa12.87□□□□□ -0.35
RTN4-204ENST00000357732 PROK1P58294 105 aa12.87□□□□□ -0.35
RTN4-204ENST00000357732 DOPEY1Q5JWR5 2465 aa12.87□□□□□ -0.35
RTN4-204ENST00000357732 ADARB2-AS1A8MUL3 147 aa12.86□□□□□ -0.35
RTN4-204ENST00000357732 MRPL23Q16540 153 aaKnown RBP12.86□□□□□ -0.35
RTN4-204ENST00000357732 CEMP1Q6PRD7 247 aaPredicted RBP12.86□□□□□ -0.35
RTN4-204ENST00000357732 Q6YL49 198 aa12.86□□□□□ -0.35
RTN4-204ENST00000357732 USP9XQ93008 2570 aaPredicted RBP12.86□□□□□ -0.35
RTN4-204ENST00000357732 DOPEY2Q9Y3R5 2298 aa12.86□□□□□ -0.35
RTN4-204ENST00000357732 COPS9Q8WXC6 57 aa12.86□□□□□ -0.35
RTN4-204ENST00000357732 TRAV8-4A0A0B4J246 113 aa12.85□□□□□ -0.35
RTN4-204ENST00000357732 CLUHP3Q96NS8 147 aa12.85□□□□□ -0.35
RTN4-204ENST00000357732 ANAPC13Q9BS18 74 aa12.85□□□□□ -0.35
RTN4-204ENST00000357732 FAM240AA0A1B0GVK7 77 aa12.85□□□□□ -0.35
RTN4-204ENST00000357732 LST1O00453 97 aa12.85□□□□□ -0.35
RTN4-204ENST00000357732 FSHBP01225 129 aa12.85□□□□□ -0.35
RTN4-204ENST00000357732 HTN1P15515 57 aa12.85□□□□□ -0.35
RTN4-204ENST00000357732 CIRBPQ14011 172 aaKnown RBP12.85□□□□□ -0.35
RTN4-204ENST00000357732 C2orf82Q6UX34 121 aa12.85□□□□□ -0.35
RTN4-204ENST00000357732 C11orf72Q8NBR9 251 aa12.85□□□□□ -0.35
RTN4-204ENST00000357732 A0A096LNT2 108 aa12.84□□□□□ -0.35
RTN4-204ENST00000357732 RBMY1BA6NDE4 496 aaKnown RBP12.84□□□□□ -0.35
RTN4-204ENST00000357732 RBMY1EA6NEQ0 496 aaKnown RBP12.84□□□□□ -0.35
RTN4-204ENST00000357732 RS1O15537 224 aa12.84□□□□□ -0.35
RTN4-204ENST00000357732 RBMY1DP0C7P1 496 aaKnown RBP12.84□□□□□ -0.35
RTN4-204ENST00000357732 GAGE2BQ13066 116 aa12.84□□□□□ -0.35
RTN4-204ENST00000357732 GAGE2EQ4V326 116 aa12.84□□□□□ -0.35
RTN4-204ENST00000357732 GAGE2DQ9UEU5 116 aa12.84□□□□□ -0.35
RTN4-204ENST00000357732 PRRC2AP48634 2157 aaKnown RBP12.84□□□□□ -0.35
RTN4-204ENST00000357732 FAM19A3Q7Z5A8 133 aa12.84□□□□□ -0.35
RTN4-204ENST00000357732 BEX4Q9NWD9 120 aaPredicted RBP12.84□□□□□ -0.35
RTN4-204ENST00000357732 H7C423 109 aa12.83□□□□□ -0.36
RTN4-204ENST00000357732 INSP01308 110 aa12.83□□□□□ -0.36
RTN4-204ENST00000357732 HERVK_113P63121 156 aa12.83□□□□□ -0.36
RTN4-204ENST00000357732 DEFB121Q5J5C9 76 aa12.83□□□□□ -0.36
RTN4-204ENST00000357732 Q6ZSN1 163 aa12.83□□□□□ -0.36
RTN4-204ENST00000357732 IGSF10Q6WRI0 2623 aa12.82□□□□□ -0.36
RTN4-204ENST00000357732 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.82□□□□□ -0.36
RTN4-204ENST00000357732 TEX49A0A1B0GTD5 131 aa12.82□□□□□ -0.36
RTN4-204ENST00000357732 IGKV2-29A2NJV5 120 aaPredicted RBP12.82□□□□□ -0.36
RTN4-204ENST00000357732 Q8N2B8 174 aa12.82□□□□□ -0.36
RTN4-204ENST00000357732 NACAE9PAV3 2078 aa12.82□□□□□ -0.36
RTN4-204ENST00000357732 RNASE13Q5GAN3 156 aaKnown RBP12.81□□□□□ -0.36
RTN4-204ENST00000357732 PPDPFQ9H3Y8 114 aa12.81□□□□□ -0.36
RTN4-204ENST00000357732 IGLV5-39A0A0G2JS06 123 aa12.81□□□□□ -0.36
RTN4-204ENST00000357732 LINC01587Q99440 93 aa12.81□□□□□ -0.36
RTN4-204ENST00000357732 PIEZO1Q92508 2521 aa12.81□□□□□ -0.36
RTN4-204ENST00000357732 SLURP1P55000 103 aa12.8□□□□□ -0.36
RTN4-204ENST00000357732 MAP6D1Q9H9H5 199 aa12.8□□□□□ -0.36
RTN4-204ENST00000357732 CDKN2A-AS1Q9UH64 79 aa12.8□□□□□ -0.36
RTN4-204ENST00000357732 CSDC2Q9Y534 153 aaKnown RBP12.8□□□□□ -0.36
RTN4-204ENST00000357732 ZANQ9Y493 2812 aa12.8□□□□□ -0.36
RTN4-204ENST00000357732 C4orf3Q8WVX3 66 aa12.8□□□□□ -0.36
RTN4-204ENST00000357732 FBN2P35556 2912 aa12.79□□□□□ -0.36
RTN4-204ENST00000357732 DGAT2L7PQ6IED9 249 aa12.79□□□□□ -0.36
RTN4-204ENST00000357732 TMEM101Q96IK0 257 aa12.79□□□□□ -0.36
RTN4-204ENST00000357732 C18orf65Q6ZTR6 163 aa12.79□□□□□ -0.36
RTN4-204ENST00000357732 DEFB136Q30KP8 78 aa12.78□□□□□ -0.36
RTN4-204ENST00000357732 Q9UF83 564 aa12.78□□□□□ -0.36
RTN4-204ENST00000357732 GAGE5Q13069 117 aa12.77□□□□□ -0.36
RTN4-204ENST00000357732 GAGE6Q13070 117 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms