RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TCTAP57738 103 aa9.51□□□□□ -0.89
HMGB1-202ENST00000339872 TMEM141Q96I45 108 aa9.51□□□□□ -0.89
HMGB1-202ENST00000339872 DEFB4AO15263 64 aa9.51□□□□□ -0.89
HMGB1-202ENST00000339872 COTL1Q14019 142 aa9.51□□□□□ -0.89
HMGB1-202ENST00000339872 ANKRD39Q53RE8 183 aa9.51□□□□□ -0.89
HMGB1-202ENST00000339872 CHTOPQ9Y3Y2 248 aaKnown RBP9.51□□□□□ -0.89
HMGB1-202ENST00000339872 IGHV4-28A0A0C4DH34 117 aa9.5□□□□□ -0.89
HMGB1-202ENST00000339872 GAGE12JA6NER3 117 aa9.5□□□□□ -0.89
HMGB1-202ENST00000339872 F8VRH5 84 aa9.5□□□□□ -0.89
HMGB1-202ENST00000339872 G3V4G9 280 aa9.5□□□□□ -0.89
HMGB1-202ENST00000339872 GAGE1Q13065 139 aa9.5□□□□□ -0.89
HMGB1-202ENST00000339872 GAGE4Q13068 117 aa9.5□□□□□ -0.89
HMGB1-202ENST00000339872 GAGE5Q13069 117 aa9.5□□□□□ -0.89
HMGB1-202ENST00000339872 GAGE13Q4V321 117 aa9.5□□□□□ -0.89
HMGB1-202ENST00000339872 LINC00612Q8N6U2 182 aa9.5□□□□□ -0.89
HMGB1-202ENST00000339872 FHL2Q14192 279 aa9.5□□□□□ -0.89
HMGB1-202ENST00000339872 FAM222AQ5U5X8 452 aa9.5□□□□□ -0.89
HMGB1-202ENST00000339872 TP73-AS1Q9UF72 201 aa9.5□□□□□ -0.89
HMGB1-202ENST00000339872 TRBV6-4A0A1B0GX49 114 aa9.49□□□□□ -0.89
HMGB1-202ENST00000339872 PRSS29PA6NIE9 313 aa9.49□□□□□ -0.89
HMGB1-202ENST00000339872 PLNP26678 52 aa9.49□□□□□ -0.89
HMGB1-202ENST00000339872 ZC2HC1BQ5TFG8 222 aa9.49□□□□□ -0.89
HMGB1-202ENST00000339872 RNF183Q96D59 192 aa9.49□□□□□ -0.89
HMGB1-202ENST00000339872 CHCHD7Q9BUK0 85 aa9.49□□□□□ -0.89
HMGB1-202ENST00000339872 ZMAT5Q9UDW3 170 aaKnown RBP9.49□□□□□ -0.89
HMGB1-202ENST00000339872 LOC100131303A0A0U1RQF7 123 aa9.49□□□□□ -0.89
HMGB1-202ENST00000339872 HNRNPA3P51991 378 aaKnown RBP9.49□□□□□ -0.89
HMGB1-202ENST00000339872 OPRPNQ99935 248 aaPredicted RBP9.49□□□□□ -0.89
HMGB1-202ENST00000339872 HHLA3Q9XRX5 114 aa9.49□□□□□ -0.89
HMGB1-202ENST00000339872 LYRM9A8MSI8 78 aa9.48□□□□□ -0.89
HMGB1-202ENST00000339872 MIFP14174 115 aa9.48□□□□□ -0.89
HMGB1-202ENST00000339872 UBE2D3P61077 147 aa9.48□□□□□ -0.89
HMGB1-202ENST00000339872 UBE2D2P62837 147 aa9.48□□□□□ -0.89
HMGB1-202ENST00000339872 PMVKQ15126 192 aa9.48□□□□□ -0.89
HMGB1-202ENST00000339872 Q8NAQ8 132 aa9.48□□□□□ -0.89
HMGB1-202ENST00000339872 COL6A5A8TX70 2615 aa9.48□□□□□ -0.89
HMGB1-202ENST00000339872 NBEAL2Q6ZNJ1 2754 aa9.48□□□□□ -0.89
HMGB1-202ENST00000339872 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.48□□□□□ -0.89
HMGB1-202ENST00000339872 IGKV2-29A2NJV5 120 aaPredicted RBP9.48□□□□□ -0.89
HMGB1-202ENST00000339872 SLC25A34Q6PIV7 304 aa9.48□□□□□ -0.89
HMGB1-202ENST00000339872 CMYA5Q8N3K9 4069 aa9.47□□□□□ -0.89
HMGB1-202ENST00000339872 DAZ4Q86SG3 579 aaKnown RBP9.47□□□□□ -0.89
HMGB1-202ENST00000339872 DAZ3Q9NR90 486 aaKnown RBP9.47□□□□□ -0.89
HMGB1-202ENST00000339872 NMUP48645 174 aa9.47□□□□□ -0.89
HMGB1-202ENST00000339872 CTAG1AP78358 180 aa9.47□□□□□ -0.89
HMGB1-202ENST00000339872 PRADC1Q9BSG0 188 aa9.47□□□□□ -0.89
HMGB1-202ENST00000339872 CST9LQ9H4G1 147 aa9.47□□□□□ -0.89
HMGB1-202ENST00000339872 PKD1L1Q8TDX9 2849 aa9.46□□□□□ -0.89
HMGB1-202ENST00000339872 IGLV4-3A0A075B6K6 122 aa9.46□□□□□ -0.9
HMGB1-202ENST00000339872 A8MZ25 164 aa9.46□□□□□ -0.9
HMGB1-202ENST00000339872 COX8AP10176 69 aa9.46□□□□□ -0.9
HMGB1-202ENST00000339872 CEMP1Q6PRD7 247 aaPredicted RBP9.46□□□□□ -0.9
HMGB1-202ENST00000339872 PYGO1Q9Y3Y4 419 aa9.45□□□□□ -0.9
HMGB1-202ENST00000339872 SAMD5Q5TGI4 173 aa9.45□□□□□ -0.9
HMGB1-202ENST00000339872 CELA1Q9UNI1 258 aa9.45□□□□□ -0.9
HMGB1-202ENST00000339872 UBE2D4Q9Y2X8 147 aa9.45□□□□□ -0.9
HMGB1-202ENST00000339872 IGLV4-69A0A075B6H9 119 aa9.44□□□□□ -0.9
HMGB1-202ENST00000339872 DAD1P61803 113 aa9.44□□□□□ -0.9
HMGB1-202ENST00000339872 SPANXA1Q9NS26 97 aa9.44□□□□□ -0.9
HMGB1-202ENST00000339872 IGKV2D-26A0A0A0MRZ7 120 aa9.44□□□□□ -0.9
HMGB1-202ENST00000339872 EREGO14944 169 aa9.44□□□□□ -0.9
HMGB1-202ENST00000339872 NTM-AS1Q6ZSK4 140 aa9.44□□□□□ -0.9
HMGB1-202ENST00000339872 RETNQ9HD89 108 aa9.44□□□□□ -0.9
HMGB1-202ENST00000339872 C11orf86A6NJI1 115 aa9.43□□□□□ -0.9
HMGB1-202ENST00000339872 PAPPA-AS1Q5QFB9 102 aa9.43□□□□□ -0.9
HMGB1-202ENST00000339872 VCX2Q9H322 139 aa9.43□□□□□ -0.9
HMGB1-202ENST00000339872 FGF6P10767 208 aa9.43□□□□□ -0.9
HMGB1-202ENST00000339872 RNASE13Q5GAN3 156 aaKnown RBP9.43□□□□□ -0.9
HMGB1-202ENST00000339872 PCP2Q8IVA1 136 aa9.43□□□□□ -0.9
HMGB1-202ENST00000339872 FAM104AQ969W3 186 aa9.43□□□□□ -0.9
HMGB1-202ENST00000339872 SNHG12Q9BXW3 62 aa9.43□□□□□ -0.9
HMGB1-202ENST00000339872 M0R143 59 aa9.42□□□□□ -0.9
HMGB1-202ENST00000339872 CRYBA4P53673 196 aa9.42□□□□□ -0.9
HMGB1-202ENST00000339872 MRPS16Q9Y3D3 137 aaKnown RBP9.42□□□□□ -0.9
HMGB1-202ENST00000339872 SPART-AS1P0CW21 52 aa9.42□□□□□ -0.9
HMGB1-202ENST00000339872 PRO0255Q9UI72 69 aa9.42□□□□□ -0.9
HMGB1-202ENST00000339872 NPSP0C0P6 89 aa9.41□□□□□ -0.9
HMGB1-202ENST00000339872 LINC00694P0DN24 101 aa9.41□□□□□ -0.9
HMGB1-202ENST00000339872 GYPEP15421 78 aa9.41□□□□□ -0.9
HMGB1-202ENST00000339872 Q6ZUT4 128 aa9.41□□□□□ -0.9
HMGB1-202ENST00000339872 BOD1L2Q8IYS8 172 aa9.41□□□□□ -0.9
HMGB1-202ENST00000339872 MDFIQ99750 246 aa9.41□□□□□ -0.9
HMGB1-202ENST00000339872 GTSF1LQ9H1H1 148 aa9.41□□□□□ -0.9
HMGB1-202ENST00000339872 BATFQ16520 125 aa9.4□□□□□ -0.9
HMGB1-202ENST00000339872 MRPL52Q86TS9 123 aaKnown RBP9.4□□□□□ -0.9
HMGB1-202ENST00000339872 AMELXQ99217 191 aa9.4□□□□□ -0.9
HMGB1-202ENST00000339872 CHAC1Q9BUX1 264 aa9.4□□□□□ -0.9
HMGB1-202ENST00000339872 TTTY13Q9BZ97 58 aa9.4□□□□□ -0.9
HMGB1-202ENST00000339872 DGAT2L7PQ6IED9 249 aa9.4□□□□□ -0.9
HMGB1-202ENST00000339872 PRB2P02812 416 aaPredicted RBP9.39□□□□□ -0.91
HMGB1-202ENST00000339872 ATP5G1P05496 136 aa9.39□□□□□ -0.91
HMGB1-202ENST00000339872 TMEM170BQ5T4T1 132 aa9.39□□□□□ -0.91
HMGB1-202ENST00000339872 C2orf91Q6ZV80 131 aa9.39□□□□□ -0.91
HMGB1-202ENST00000339872 SBSPONQ8IVN8 264 aa9.39□□□□□ -0.91
HMGB1-202ENST00000339872 TMEM243Q9BU79 118 aa9.39□□□□□ -0.91
HMGB1-202ENST00000339872 ANK2Q01484 3957 aa9.39□□□□□ -0.91
HMGB1-202ENST00000339872 TRBV25-1A0A075B6N4 114 aa9.39□□□□□ -0.91
HMGB1-202ENST00000339872 A0A0J9YXV3 536 aa9.39□□□□□ -0.91
HMGB1-202ENST00000339872 UBE2L6O14933 153 aa9.39□□□□□ -0.91
HMGB1-202ENST00000339872 PAX4O43316 350 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 213.5 ms