RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 TSHBP01222 138 aa15.15■□□□□ 0.02
SDC3-202ENST00000339394 IQCJQ1A5X6 159 aa15.15■□□□□ 0.02
SDC3-202ENST00000339394 MAP1LC3AQ9H492 121 aa15.15■□□□□ 0.02
SDC3-202ENST00000339394 KIR2DL4Q99706 377 aa15.14■□□□□ 0.01
SDC3-202ENST00000339394 IGHV1-24A0A0C4DH33 117 aa15.13■□□□□ 0.01
SDC3-202ENST00000339394 SIVA1O15304 175 aa15.13■□□□□ 0.01
SDC3-202ENST00000339394 TRGC2P03986 189 aa15.13■□□□□ 0.01
SDC3-202ENST00000339394 HYDINQ4G0P3 5121 aa15.12■□□□□ 0.01
SDC3-202ENST00000339394 AMTP48728 403 aa15.12■□□□□ 0.01
SDC3-202ENST00000339394 IGLV2-18A0A075B6J9 118 aa15.11■□□□□ 0.01
SDC3-202ENST00000339394 CHCHD5Q9BSY4 110 aa15.11■□□□□ 0.01
SDC3-202ENST00000339394 FCER1GP30273 86 aa15.11■□□□□ 0.01
SDC3-202ENST00000339394 IFI27P40305 119 aaPredicted RBP15.1■□□□□ 0.01
SDC3-202ENST00000339394 TMEM243Q9BU79 118 aa15.1■□□□□ 0.01
SDC3-202ENST00000339394 TCAPO15273 167 aa15.09■□□□□ 0.01
SDC3-202ENST00000339394 DNAH10OSP0CZ25 163 aa15.09■□□□□ 0.01
SDC3-202ENST00000339394 NIT1Q86X76 327 aa15.09■□□□□ 0.01
SDC3-202ENST00000339394 Q8N8P6 123 aa15.09■□□□□ 0.01
SDC3-202ENST00000339394 CHCHD7Q9BUK0 85 aa15.09■□□□□ 0.01
SDC3-202ENST00000339394 TMEM262E9PQX1 116 aa15.08■□□□□ 0
SDC3-202ENST00000339394 Q8N3U1 123 aa15.08■□□□□ 0
SDC3-202ENST00000339394 ESDP10768 282 aa15.07■□□□□ 0
SDC3-202ENST00000339394 LINC01556Q5JQF7 62 aa15.07■□□□□ 0
SDC3-202ENST00000339394 NXT2Q9NPJ8 142 aaKnown RBP15.07■□□□□ 0
SDC3-202ENST00000339394 GAGE6Q13070 117 aa15.07■□□□□ 0
SDC3-202ENST00000339394 C18orf32Q8TCD1 76 aa15.07■□□□□ 0
SDC3-202ENST00000339394 PRSS3P2Q8NHM4 247 aa15.06■□□□□ 0
SDC3-202ENST00000339394 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.05■□□□□ -0
SDC3-202ENST00000339394 A0A087WX48 190 aa15.05■□□□□ -0
SDC3-202ENST00000339394 IGKV2-29A2NJV5 120 aaPredicted RBP15.05■□□□□ -0
SDC3-202ENST00000339394 UBE2L6O14933 153 aa15.05■□□□□ -0
SDC3-202ENST00000339394 IGHV3-30P01768 117 aa15.05■□□□□ -0
SDC3-202ENST00000339394 IGHV3-33P01772 117 aa15.05■□□□□ -0
SDC3-202ENST00000339394 IGHV3-30-3P0DP02 117 aa15.05■□□□□ -0
SDC3-202ENST00000339394 IGHV3-30-5P0DP03 117 aa15.05■□□□□ -0
SDC3-202ENST00000339394 NBDYA0A0U1RRE5 68 aa15.04■□□□□ -0
SDC3-202ENST00000339394 MPV17L2Q567V2 206 aa15.04■□□□□ -0
SDC3-202ENST00000339394 M0R2N4 97 aa15.03■□□□□ -0
SDC3-202ENST00000339394 DNAH6Q9C0G6 4158 aa15.03■□□□□ -0
SDC3-202ENST00000339394 PKIAP61925 76 aa15.02■□□□□ -0
SDC3-202ENST00000339394 Q8N976 141 aa15.02■□□□□ -0
SDC3-202ENST00000339394 KRTAP1-5Q9BYS1 174 aa15.02■□□□□ -0
SDC3-202ENST00000339394 DNAH2Q9P225 4427 aa15.02■□□□□ -0
SDC3-202ENST00000339394 TRAV9-2A0A087WT02 112 aa15.02□□□□□ -0.01
SDC3-202ENST00000339394 H7C423 109 aa15.02□□□□□ -0.01
SDC3-202ENST00000339394 K7EMI3 77 aa15.02□□□□□ -0.01
SDC3-202ENST00000339394 RYR2Q92736 4967 aa15.02□□□□□ -0.01
SDC3-202ENST00000339394 K7EP13 123 aa15.01□□□□□ -0.01
SDC3-202ENST00000339394 RBX1P62877 108 aa15.01□□□□□ -0.01
SDC3-202ENST00000339394 LAGE3Q14657 143 aa15.01□□□□□ -0.01
SDC3-202ENST00000339394 C20orf203Q8NBC4 194 aa15.01□□□□□ -0.01
SDC3-202ENST00000339394 FGF6P10767 208 aa15□□□□□ -0.01
SDC3-202ENST00000339394 ORMDL2Q53FV1 153 aa15□□□□□ -0.01
SDC3-202ENST00000339394 A0A1B0GUV1 79 aa14.99□□□□□ -0.01
SDC3-202ENST00000339394 LINC01546A6NGU7 62 aa14.99□□□□□ -0.01
SDC3-202ENST00000339394 TTC32Q5I0X7 151 aa14.99□□□□□ -0.01
SDC3-202ENST00000339394 Q6ZR54 194 aa14.99□□□□□ -0.01
SDC3-202ENST00000339394 FA2HQ7L5A8 372 aa14.99□□□□□ -0.01
SDC3-202ENST00000339394 LINC00614P0C842 121 aa14.98□□□□□ -0.01
SDC3-202ENST00000339394 RPL39P62891 51 aaKnown RBP14.98□□□□□ -0.01
SDC3-202ENST00000339394 C10orf126Q8N4M7 172 aa14.98□□□□□ -0.01
SDC3-202ENST00000339394 URB1-AS1Q96HZ7 61 aa14.98□□□□□ -0.01
SDC3-202ENST00000339394 IGLV4-60A0A075B6I1 120 aa14.98□□□□□ -0.01
SDC3-202ENST00000339394 AMMECR1LQ6DCA0 310 aa14.98□□□□□ -0.01
SDC3-202ENST00000339394 RNASEKQ6P5S7 137 aaKnown RBP14.98□□□□□ -0.01
SDC3-202ENST00000339394 TMEM18Q96B42 140 aa14.98□□□□□ -0.01
SDC3-202ENST00000339394 RYR3Q15413 4870 aa14.97□□□□□ -0.01
SDC3-202ENST00000339394 AP5S1Q9NUS5 200 aa14.97□□□□□ -0.01
SDC3-202ENST00000339394 KLK12Q9UKR0 248 aa14.97□□□□□ -0.01
SDC3-202ENST00000339394 ANGP03950 147 aaKnown RBP14.96□□□□□ -0.01
SDC3-202ENST00000339394 Q0VG73 95 aa14.96□□□□□ -0.01
SDC3-202ENST00000339394 MRPL52Q86TS9 123 aaKnown RBP14.96□□□□□ -0.01
SDC3-202ENST00000339394 UBE2D4Q9Y2X8 147 aa14.96□□□□□ -0.01
SDC3-202ENST00000339394 IBA57-AS1B1ANH7 110 aa14.95□□□□□ -0.02
SDC3-202ENST00000339394 ZNF25P17030 456 aaPredicted RBP14.95□□□□□ -0.02
SDC3-202ENST00000339394 RAB5BP61020 215 aa14.95□□□□□ -0.02
SDC3-202ENST00000339394 BTF3P20290 206 aaKnown RBP14.94□□□□□ -0.02
SDC3-202ENST00000339394 C2orf66Q6UXQ4 117 aa14.94□□□□□ -0.02
SDC3-202ENST00000339394 BAGE3Q86Y29 109 aa14.94□□□□□ -0.02
SDC3-202ENST00000339394 HIST1H2BKO60814 126 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 HIST1H2BJP06899 126 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 HIST1H2BOP23527 126 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 HIST1H2BBP33778 126 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 HIST1H2BDP58876 126 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 HIST1H2BCP62807 126 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 HIST2H2BEQ16778 126 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.93□□□□□ -0.02
SDC3-202ENST00000339394 LINC00269Q8N2A0 174 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 OR5A1Q8NGJ0 315 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 HIST1H2BHQ93079 126 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 TMEM101Q96IK0 257 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 HIST1H2BNQ99877 126 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 HIST1H2BMQ99879 126 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 CYSLTR1Q9Y271 337 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 CSDC2Q9Y534 153 aaKnown RBP14.93□□□□□ -0.02
SDC3-202ENST00000339394 DNAH10Q8IVF4 4471 aa14.93□□□□□ -0.02
SDC3-202ENST00000339394 G0S2P27469 103 aa14.92□□□□□ -0.02
SDC3-202ENST00000339394 SMAGPQ0VAQ4 97 aa14.92□□□□□ -0.02
SDC3-202ENST00000339394 DGAT2L7PQ6IED9 249 aa14.92□□□□□ -0.02
SDC3-202ENST00000339394 TIMM21Q9BVV7 248 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms