RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 GAGE12FP0CL80 117 aa11.03□□□□□ -0.64
LIMS1-202ENST00000338045 GAGE12GP0CL81 117 aa11.03□□□□□ -0.64
LIMS1-202ENST00000338045 GAGE12IP0CL82 117 aa11.03□□□□□ -0.64
LIMS1-202ENST00000338045 NEXN-AS1Q8NBZ9 246 aa11.02□□□□□ -0.64
LIMS1-202ENST00000338045 TOMM6Q96B49 74 aa11.02□□□□□ -0.64
LIMS1-202ENST00000338045 DNAJC30Q96LL9 226 aa11.02□□□□□ -0.64
LIMS1-202ENST00000338045 C18orf15Q96N68 181 aa11.02□□□□□ -0.64
LIMS1-202ENST00000338045 Q9UF83 564 aa11.02□□□□□ -0.64
LIMS1-202ENST00000338045 LINC01545Q5VT33 79 aa11.02□□□□□ -0.65
LIMS1-202ENST00000338045 RNF183Q96D59 192 aa11.02□□□□□ -0.65
LIMS1-202ENST00000338045 TRGV2A0A075B6R0 118 aa11.01□□□□□ -0.65
LIMS1-202ENST00000338045 I3L3M4 83 aa11.01□□□□□ -0.65
LIMS1-202ENST00000338045 MDFIQ99750 246 aa11.01□□□□□ -0.65
LIMS1-202ENST00000338045 ATP5LO75964 103 aa11□□□□□ -0.65
LIMS1-202ENST00000338045 EMP1P54849 157 aa11□□□□□ -0.65
LIMS1-202ENST00000338045 DNAH3Q8TD57 4116 aa11□□□□□ -0.65
LIMS1-202ENST00000338045 TRBV10-1A0A0K0K1A3 114 aa11□□□□□ -0.65
LIMS1-202ENST00000338045 TSHBP01222 138 aa11□□□□□ -0.65
LIMS1-202ENST00000338045 MIFP14174 115 aa11□□□□□ -0.65
LIMS1-202ENST00000338045 RHOHQ15669 191 aa11□□□□□ -0.65
LIMS1-202ENST00000338045 VAMP3Q15836 100 aa11□□□□□ -0.65
LIMS1-202ENST00000338045 C2orf66Q6UXQ4 117 aa11□□□□□ -0.65
LIMS1-202ENST00000338045 VAMP8Q9BV40 100 aa11□□□□□ -0.65
LIMS1-202ENST00000338045 LINC01549A6NIU2 74 aa10.99□□□□□ -0.65
LIMS1-202ENST00000338045 K7EQD1 137 aa10.99□□□□□ -0.65
LIMS1-202ENST00000338045 LGALS9CQ6DKI2 356 aa10.99□□□□□ -0.65
LIMS1-202ENST00000338045 Q8NAQ8 132 aa10.99□□□□□ -0.65
LIMS1-202ENST00000338045 UQCR10Q9UDW1 63 aa10.99□□□□□ -0.65
LIMS1-202ENST00000338045 LYRM9A8MSI8 78 aa10.98□□□□□ -0.65
LIMS1-202ENST00000338045 SIGMAR1Q99720 223 aa10.98□□□□□ -0.65
LIMS1-202ENST00000338045 MRPS16Q9Y3D3 137 aaKnown RBP10.98□□□□□ -0.65
LIMS1-202ENST00000338045 IGHV4-28A0A0C4DH34 117 aa10.98□□□□□ -0.65
LIMS1-202ENST00000338045 SLC25A29Q8N8R3 303 aa10.98□□□□□ -0.65
LIMS1-202ENST00000338045 CYSLTR1Q9Y271 337 aa10.98□□□□□ -0.65
LIMS1-202ENST00000338045 TRBV6-4A0A1B0GX49 114 aa10.97□□□□□ -0.65
LIMS1-202ENST00000338045 DEFB104AQ8WTQ1 72 aa10.97□□□□□ -0.65
LIMS1-202ENST00000338045 NBEAL2Q6ZNJ1 2754 aa10.97□□□□□ -0.65
LIMS1-202ENST00000338045 TRBV7-3A0A075B6L6 115 aa10.96□□□□□ -0.65
LIMS1-202ENST00000338045 FHL2Q14192 279 aa10.96□□□□□ -0.65
LIMS1-202ENST00000338045 FAM222AQ5U5X8 452 aa10.96□□□□□ -0.65
LIMS1-202ENST00000338045 ERASQ7Z444 233 aa10.96□□□□□ -0.65
LIMS1-202ENST00000338045 ATOH7Q8N100 152 aa10.96□□□□□ -0.65
LIMS1-202ENST00000338045 SCGB3A1Q96QR1 104 aa10.96□□□□□ -0.65
LIMS1-202ENST00000338045 DKK2Q9UBU2 259 aa10.96□□□□□ -0.65
LIMS1-202ENST00000338045 TP53TG1Q9Y2A0 90 aa10.96□□□□□ -0.65
LIMS1-202ENST00000338045 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.95□□□□□ -0.66
LIMS1-202ENST00000338045 DEFB130BP0DP73 79 aa10.95□□□□□ -0.66
LIMS1-202ENST00000338045 DEFB130AP0DP74 79 aa10.95□□□□□ -0.66
LIMS1-202ENST00000338045 BOD1L2Q8IYS8 172 aa10.95□□□□□ -0.66
LIMS1-202ENST00000338045 ZMAT4Q9H898 229 aa10.95□□□□□ -0.66
LIMS1-202ENST00000338045 IGIPA6NJ69 53 aa10.95□□□□□ -0.66
LIMS1-202ENST00000338045 RPL36AP83881 106 aaKnown RBP10.95□□□□□ -0.66
LIMS1-202ENST00000338045 C20orf203Q8NBC4 194 aa10.95□□□□□ -0.66
LIMS1-202ENST00000338045 RPL36ALQ969Q0 106 aaKnown RBP10.95□□□□□ -0.66
LIMS1-202ENST00000338045 PAM16Q9Y3D7 125 aa10.95□□□□□ -0.66
LIMS1-202ENST00000338045 TRAV9-2A0A087WT02 112 aa10.94□□□□□ -0.66
LIMS1-202ENST00000338045 TRGV4A0A0C4DH28 118 aa10.94□□□□□ -0.66
LIMS1-202ENST00000338045 PRSS1P07477 247 aa10.94□□□□□ -0.66
LIMS1-202ENST00000338045 HNRNPA3P51991 378 aaKnown RBP10.94□□□□□ -0.66
LIMS1-202ENST00000338045 ZNRF2Q8NHG8 242 aa10.94□□□□□ -0.66
LIMS1-202ENST00000338045 PMCHL2Q9BQD1 86 aa10.94□□□□□ -0.66
LIMS1-202ENST00000338045 RPL39P62891 51 aaKnown RBP10.93□□□□□ -0.66
LIMS1-202ENST00000338045 C5orf47Q569G3 176 aa10.93□□□□□ -0.66
LIMS1-202ENST00000338045 TIMM17AQ99595 171 aa10.93□□□□□ -0.66
LIMS1-202ENST00000338045 DEFB4AO15263 64 aa10.93□□□□□ -0.66
LIMS1-202ENST00000338045 UBE2D3P61077 147 aa10.93□□□□□ -0.66
LIMS1-202ENST00000338045 UBE2D2P62837 147 aa10.93□□□□□ -0.66
LIMS1-202ENST00000338045 KPRPQ5T749 579 aaPredicted RBP10.93□□□□□ -0.66
LIMS1-202ENST00000338045 GEMIN7Q9H840 131 aaKnown RBP10.93□□□□□ -0.66
LIMS1-202ENST00000338045 TRAV12-1A0A0B4J245 112 aa10.92□□□□□ -0.66
LIMS1-202ENST00000338045 Q6ZN92 141 aa10.92□□□□□ -0.66
LIMS1-202ENST00000338045 DAZ4Q86SG3 579 aaKnown RBP10.92□□□□□ -0.66
LIMS1-202ENST00000338045 TMEM141Q96I45 108 aa10.92□□□□□ -0.66
LIMS1-202ENST00000338045 DAZ3Q9NR90 486 aaKnown RBP10.92□□□□□ -0.66
LIMS1-202ENST00000338045 SPATA45Q537H7 98 aa10.91□□□□□ -0.66
LIMS1-202ENST00000338045 PHLDA1Q8WV24 401 aaPredicted RBP10.91□□□□□ -0.66
LIMS1-202ENST00000338045 BAALCQ8WXS3 180 aa10.91□□□□□ -0.66
LIMS1-202ENST00000338045 CHCHD7Q9BUK0 85 aa10.91□□□□□ -0.66
LIMS1-202ENST00000338045 A0A087WX48 190 aa10.91□□□□□ -0.66
LIMS1-202ENST00000338045 IGHV3-38A0A0C4DH36 116 aa10.91□□□□□ -0.66
LIMS1-202ENST00000338045 GAGE12JA6NER3 117 aa10.9□□□□□ -0.66
LIMS1-202ENST00000338045 LINC00694P0DN24 101 aa10.9□□□□□ -0.66
LIMS1-202ENST00000338045 GAGE4Q13068 117 aa10.9□□□□□ -0.66
LIMS1-202ENST00000338045 GAGE5Q13069 117 aa10.9□□□□□ -0.66
LIMS1-202ENST00000338045 GAGE13Q4V321 117 aa10.9□□□□□ -0.66
LIMS1-202ENST00000338045 PRADC1Q9BSG0 188 aa10.9□□□□□ -0.66
LIMS1-202ENST00000338045 CELA1Q9UNI1 258 aa10.9□□□□□ -0.66
LIMS1-202ENST00000338045 HHLA3Q9XRX5 114 aa10.9□□□□□ -0.66
LIMS1-202ENST00000338045 SIVA1O15304 175 aa10.89□□□□□ -0.67
LIMS1-202ENST00000338045 SPART-AS1P0CW21 52 aa10.89□□□□□ -0.67
LIMS1-202ENST00000338045 LOC100131303A0A0U1RQF7 123 aa10.89□□□□□ -0.67
LIMS1-202ENST00000338045 hDV102S1A0JD36 115 aa10.89□□□□□ -0.67
LIMS1-202ENST00000338045 PYGO1Q9Y3Y4 419 aa10.89□□□□□ -0.67
LIMS1-202ENST00000338045 DAD1P61803 113 aa10.88□□□□□ -0.67
LIMS1-202ENST00000338045 RETNQ9HD89 108 aa10.88□□□□□ -0.67
LIMS1-202ENST00000338045 MRPL35Q9NZE8 188 aaKnown RBP10.88□□□□□ -0.67
LIMS1-202ENST00000338045 PRO0255Q9UI72 69 aa10.88□□□□□ -0.67
LIMS1-202ENST00000338045 TEX48A0A1B0GUV7 120 aa10.87□□□□□ -0.67
LIMS1-202ENST00000338045 F8VRH5 84 aa10.87□□□□□ -0.67
LIMS1-202ENST00000338045 NTM-AS1Q6ZSK4 140 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms