RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TRBV27A0A0K0K1C4 114 aa9.97□□□□□ -0.81
CCDC88C-201ENST00000331194 TRGV11A0A075B6L2 103 aa9.97□□□□□ -0.81
CCDC88C-201ENST00000331194 TRAV12-2A0A075B6T6 113 aa9.97□□□□□ -0.81
CCDC88C-201ENST00000331194 IGHV3OR16-10A0A075B7F0 116 aa9.97□□□□□ -0.81
CCDC88C-201ENST00000331194 TRBV7-1A0A0A6YYK4 115 aa9.96□□□□□ -0.81
CCDC88C-201ENST00000331194 OVOL1O14753 267 aa9.96□□□□□ -0.81
CCDC88C-201ENST00000331194 I3L3M4 83 aa9.96□□□□□ -0.82
CCDC88C-201ENST00000331194 NDUFA7O95182 113 aa9.96□□□□□ -0.82
CCDC88C-201ENST00000331194 FAM19A4Q96LR4 140 aa9.96□□□□□ -0.82
CCDC88C-201ENST00000331194 IGLV4-3A0A075B6K6 122 aa9.96□□□□□ -0.82
CCDC88C-201ENST00000331194 SAA4P35542 130 aa9.96□□□□□ -0.82
CCDC88C-201ENST00000331194 DUX5Q96PT3 197 aa9.96□□□□□ -0.82
CCDC88C-201ENST00000331194 MINOS1Q5TGZ0 78 aa9.95□□□□□ -0.82
CCDC88C-201ENST00000331194 CCDC168Q8NDH2 2452 aa9.95□□□□□ -0.82
CCDC88C-201ENST00000331194 NBPF19A0A087WUL8 3843 aa9.95□□□□□ -0.82
CCDC88C-201ENST00000331194 IGHV3-73A0A0B4J1V6 119 aa9.95□□□□□ -0.82
CCDC88C-201ENST00000331194 J3KT08 172 aa9.95□□□□□ -0.82
CCDC88C-201ENST00000331194 M0QY20 66 aa9.95□□□□□ -0.82
CCDC88C-201ENST00000331194 NXPH4O95158 308 aa9.94□□□□□ -0.82
CCDC88C-201ENST00000331194 TIMM21Q9BVV7 248 aa9.94□□□□□ -0.82
CCDC88C-201ENST00000331194 MED14OSP0DP75 135 aa9.94□□□□□ -0.82
CCDC88C-201ENST00000331194 TMEM101Q96IK0 257 aa9.94□□□□□ -0.82
CCDC88C-201ENST00000331194 KLK9Q9UKQ9 250 aa9.94□□□□□ -0.82
CCDC88C-201ENST00000331194 CSPG4Q6UVK1 2322 aa9.94□□□□□ -0.82
CCDC88C-201ENST00000331194 C20orf203Q8NBC4 194 aa9.93□□□□□ -0.82
CCDC88C-201ENST00000331194 DOPEY2Q9Y3R5 2298 aa9.93□□□□□ -0.82
CCDC88C-201ENST00000331194 A0A0U1RRA0 63 aa9.93□□□□□ -0.82
CCDC88C-201ENST00000331194 SMCR5Q8TEV8 140 aa9.93□□□□□ -0.82
CCDC88C-201ENST00000331194 Q9UF83 564 aa9.93□□□□□ -0.82
CCDC88C-201ENST00000331194 NDUFA12Q9UI09 145 aa9.93□□□□□ -0.82
CCDC88C-201ENST00000331194 MINOS1-NBL1R4GNA1 71 aa9.93□□□□□ -0.82
CCDC88C-201ENST00000331194 PRB1P04280 392 aa9.92□□□□□ -0.82
CCDC88C-201ENST00000331194 ADORA2A-AS1P86434 159 aa9.92□□□□□ -0.82
CCDC88C-201ENST00000331194 KLRB1Q12918 225 aa9.92□□□□□ -0.82
CCDC88C-201ENST00000331194 FAM104AQ969W3 186 aa9.92□□□□□ -0.82
CCDC88C-201ENST00000331194 PROK1P58294 105 aa9.92□□□□□ -0.82
CCDC88C-201ENST00000331194 NOTCH2Q04721 2471 aa9.92□□□□□ -0.82
CCDC88C-201ENST00000331194 LST1O00453 97 aa9.91□□□□□ -0.82
CCDC88C-201ENST00000331194 IGHV1-69P01742 117 aa9.91□□□□□ -0.82
CCDC88C-201ENST00000331194 COX6CP09669 75 aa9.91□□□□□ -0.82
CCDC88C-201ENST00000331194 RHPN1-AS1Q9BWJ2 59 aa9.91□□□□□ -0.82
CCDC88C-201ENST00000331194 TRAV41A0A0B4J266 112 aa9.91□□□□□ -0.82
CCDC88C-201ENST00000331194 C3orf22Q8N5N4 141 aa9.91□□□□□ -0.82
CCDC88C-201ENST00000331194 LINC01600Q96MT4 127 aa9.91□□□□□ -0.82
CCDC88C-201ENST00000331194 SIRPDQ9H106 197 aa9.91□□□□□ -0.82
CCDC88C-201ENST00000331194 H3BT86 120 aa9.91□□□□□ -0.82
CCDC88C-201ENST00000331194 CD28P10747 220 aa9.9□□□□□ -0.82
CCDC88C-201ENST00000331194 APRG1Q8IVJ8 170 aa9.9□□□□□ -0.82
CCDC88C-201ENST00000331194 C5orf56Q8N8D9 126 aa9.9□□□□□ -0.82
CCDC88C-201ENST00000331194 DOPEY1Q5JWR5 2465 aa9.9□□□□□ -0.82
CCDC88C-201ENST00000331194 C2CD3Q4AC94 2353 aa9.9□□□□□ -0.82
CCDC88C-201ENST00000331194 TRBV6-5A0A0K0K1A5 114 aa9.9□□□□□ -0.82
CCDC88C-201ENST00000331194 KLLNB2CW77 178 aa9.9□□□□□ -0.82
CCDC88C-201ENST00000331194 HTN1P15515 57 aa9.9□□□□□ -0.82
CCDC88C-201ENST00000331194 NSUN5P1Q3KNT7 163 aa9.9□□□□□ -0.82
CCDC88C-201ENST00000331194 OR13C6PQ8NH95 151 aa9.9□□□□□ -0.82
CCDC88C-201ENST00000331194 PRM2P04554 102 aa9.89□□□□□ -0.83
CCDC88C-201ENST00000331194 GNLYP22749 145 aa9.89□□□□□ -0.83
CCDC88C-201ENST00000331194 ZNF625Q96I27 306 aaPredicted RBP9.89□□□□□ -0.83
CCDC88C-201ENST00000331194 A0A0J9YX75 114 aa9.89□□□□□ -0.83
CCDC88C-201ENST00000331194 TRBV7-7A0A0K0K1E9 115 aa9.89□□□□□ -0.83
CCDC88C-201ENST00000331194 TMEM61Q8N0U2 210 aa9.89□□□□□ -0.83
CCDC88C-201ENST00000331194 LRRC75A-AS1Q8N1F1 130 aa9.89□□□□□ -0.83
CCDC88C-201ENST00000331194 IGHV3-16A0A0C4DH30 117 aa9.88□□□□□ -0.83
CCDC88C-201ENST00000331194 F5H768 121 aa9.88□□□□□ -0.83
CCDC88C-201ENST00000331194 WIPF1O43516 503 aa9.88□□□□□ -0.83
CCDC88C-201ENST00000331194 MIAQ16674 131 aa9.88□□□□□ -0.83
CCDC88C-201ENST00000331194 KLK9Q2XQG4 91 aa9.88□□□□□ -0.83
CCDC88C-201ENST00000331194 FBN2P35556 2912 aa9.88□□□□□ -0.83
CCDC88C-201ENST00000331194 UCNP55089 124 aa9.87□□□□□ -0.83
CCDC88C-201ENST00000331194 CITED2Q99967 270 aaPredicted RBP9.87□□□□□ -0.83
CCDC88C-201ENST00000331194 IGHV1-58A0A0C4DH39 117 aa9.87□□□□□ -0.83
CCDC88C-201ENST00000331194 A0A1W2PPR1 153 aa9.87□□□□□ -0.83
CCDC88C-201ENST00000331194 RHOHQ15669 191 aa9.87□□□□□ -0.83
CCDC88C-201ENST00000331194 SETD2Q9BYW2 2564 aaPredicted RBP9.87□□□□□ -0.83
CCDC88C-201ENST00000331194 NOTCH3Q9UM47 2321 aa9.87□□□□□ -0.83
CCDC88C-201ENST00000331194 RS1O15537 224 aa9.87□□□□□ -0.83
CCDC88C-201ENST00000331194 LY6EQ16553 131 aa9.87□□□□□ -0.83
CCDC88C-201ENST00000331194 DEFB121Q5J5C9 76 aa9.87□□□□□ -0.83
CCDC88C-201ENST00000331194 KNCNA6PVL3 124 aa9.86□□□□□ -0.83
CCDC88C-201ENST00000331194 NDUFA4O00483 81 aa9.86□□□□□ -0.83
CCDC88C-201ENST00000331194 SPINK13Q1W4C9 94 aa9.86□□□□□ -0.83
CCDC88C-201ENST00000331194 BRD3OSQ6XYD6 125 aa9.86□□□□□ -0.83
CCDC88C-201ENST00000331194 NAV2Q8IVL1 2488 aa9.86□□□□□ -0.83
CCDC88C-201ENST00000331194 FAM240AA0A1B0GVK7 77 aa9.86□□□□□ -0.83
CCDC88C-201ENST00000331194 UQCRQO14949 82 aa9.86□□□□□ -0.83
CCDC88C-201ENST00000331194 IGHG2P01859 326 aa9.86□□□□□ -0.83
CCDC88C-201ENST00000331194 C4orf26Q17RF5 130 aa9.86□□□□□ -0.83
CCDC88C-201ENST00000331194 GAGE2AQ6NT46 116 aa9.86□□□□□ -0.83
CCDC88C-201ENST00000331194 Q8N2B8 174 aa9.86□□□□□ -0.83
CCDC88C-201ENST00000331194 SONP18583 2426 aaKnown RBP9.85□□□□□ -0.83
CCDC88C-201ENST00000331194 VSIG2Q96IQ7 327 aa9.85□□□□□ -0.83
CCDC88C-201ENST00000331194 C9orf85Q96MD7 179 aa9.85□□□□□ -0.83
CCDC88C-201ENST00000331194 SPANXDQ9BXN6 97 aa9.85□□□□□ -0.83
CCDC88C-201ENST00000331194 SPANXCQ9NY87 97 aa9.85□□□□□ -0.83
CCDC88C-201ENST00000331194 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.85□□□□□ -0.83
CCDC88C-201ENST00000331194 IGKV2-29A2NJV5 120 aaPredicted RBP9.85□□□□□ -0.83
CCDC88C-201ENST00000331194 C19orf84I3L1E1 186 aa9.85□□□□□ -0.83
CCDC88C-201ENST00000331194 MRPS36P82909 103 aaKnown RBP9.85□□□□□ -0.83
CCDC88C-201ENST00000331194 HRCT1Q6UXD1 115 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms