RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 HIST2H2BDQ6DRA6 164 aa6.09□□□□□ -1.43
CIITA-201ENST00000324288 J3QLI3 93 aa6.09□□□□□ -1.43
CIITA-201ENST00000324288 LINC00643Q86TS7 51 aa6.09□□□□□ -1.43
CIITA-201ENST00000324288 SEC61GP60059 68 aa6.09□□□□□ -1.43
CIITA-201ENST00000324288 FANCD2OSQ96PS1 177 aa6.09□□□□□ -1.43
CIITA-201ENST00000324288 THSD7BQ9C0I4 1608 aa6.09□□□□□ -1.43
CIITA-201ENST00000324288 LY6G6EA0A0G2JKS1 128 aa6.09□□□□□ -1.43
CIITA-201ENST00000324288 SPART-AS1P0CW21 52 aa6.09□□□□□ -1.43
CIITA-201ENST00000324288 U3KQA8 63 aa6.09□□□□□ -1.43
CIITA-201ENST00000324288 FAM167A-AS1Q96KT0 104 aa6.09□□□□□ -1.43
CIITA-201ENST00000324288 C16orf54Q6UWD8 224 aa6.09□□□□□ -1.44
CIITA-201ENST00000324288 CTSGP08311 255 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 PIK3CD-AS1Q5SR53 167 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 CTSZQ9UBR2 303 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 KLK12Q9UKR0 248 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 IGHV4-61A0A0C4DH41 118 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 HHLA3Q9XRX5 114 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 TOMM6Q96B49 74 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 HECTD1Q9ULT8 2610 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 K7EIM0 57 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 NDUFA1O15239 70 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 HIGD2BQ4VC39 106 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 MIR7-3HGQ8N6C7 128 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 CEP295Q9C0D2 2601 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 DIRC1Q969H9 104 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 A6NED7 52 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 M0QXV9 152 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 NDUFA11Q86Y39 141 aa6.08□□□□□ -1.44
CIITA-201ENST00000324288 E9PLD3 99 aa6.07□□□□□ -1.44
CIITA-201ENST00000324288 IL15RAQ13261 267 aa6.07□□□□□ -1.44
CIITA-201ENST00000324288 C9orf66Q5T8R8 295 aa6.07□□□□□ -1.44
CIITA-201ENST00000324288 LINC00311Q8N616 119 aa6.07□□□□□ -1.44
CIITA-201ENST00000324288 AJUBAQ96IF1 538 aa6.07□□□□□ -1.44
CIITA-201ENST00000324288 HRCT1Q6UXD1 115 aa6.07□□□□□ -1.44
CIITA-201ENST00000324288 TEX22C9J3V5 150 aa6.07□□□□□ -1.44
CIITA-201ENST00000324288 COL5A1P20908 1838 aaPredicted RBP6.07□□□□□ -1.44
CIITA-201ENST00000324288 IGKV1-17P01599 117 aa6.07□□□□□ -1.44
CIITA-201ENST00000324288 CRIPAKQ8N1N5 446 aa6.07□□□□□ -1.44
CIITA-201ENST00000324288 H3BT86 120 aa6.07□□□□□ -1.44
CIITA-201ENST00000324288 DAZ2Q13117 558 aaKnown RBP6.07□□□□□ -1.44
CIITA-201ENST00000324288 DAZ4Q86SG3 579 aaKnown RBP6.07□□□□□ -1.44
CIITA-201ENST00000324288 DAZ3Q9NR90 486 aaKnown RBP6.07□□□□□ -1.44
CIITA-201ENST00000324288 IGHV4-30-4P0DP06 118 aa6.07□□□□□ -1.44
CIITA-201ENST00000324288 IGHV4-31P0DP07 118 aa6.07□□□□□ -1.44
CIITA-201ENST00000324288 SPAG11BQ08648 103 aa6.07□□□□□ -1.44
CIITA-201ENST00000324288 MAPKAPK5-AS1Q8N8E1 139 aa6.07□□□□□ -1.44
CIITA-201ENST00000324288 FGF23Q9GZV9 251 aaPredicted RBP6.07□□□□□ -1.44
CIITA-201ENST00000324288 MIAQ16674 131 aa6.06□□□□□ -1.44
CIITA-201ENST00000324288 NDUFA7O95182 113 aa6.06□□□□□ -1.44
CIITA-201ENST00000324288 WFDC10BQ8IUB3 73 aa6.06□□□□□ -1.44
CIITA-201ENST00000324288 IGHV7-81A0A0B4J1V7 117 aa6.06□□□□□ -1.44
CIITA-201ENST00000324288 MDFICQ9P1T7 246 aa6.06□□□□□ -1.44
CIITA-201ENST00000324288 TRBV7-3A0A075B6L6 115 aa6.06□□□□□ -1.44
CIITA-201ENST00000324288 NANOS2P60321 138 aaKnown RBP6.05□□□□□ -1.44
CIITA-201ENST00000324288 IGHV1-58A0A0C4DH39 117 aa6.05□□□□□ -1.44
CIITA-201ENST00000324288 ZFP36P26651 326 aaKnown RBP6.05□□□□□ -1.44
CIITA-201ENST00000324288 CASC2Q6XLA1 102 aa6.05□□□□□ -1.44
CIITA-201ENST00000324288 MRPS12O15235 138 aaKnown RBP6.05□□□□□ -1.44
CIITA-201ENST00000324288 IGLV1-44P01699 117 aa6.05□□□□□ -1.44
CIITA-201ENST00000324288 LINC00694P0DN24 101 aa6.05□□□□□ -1.44
CIITA-201ENST00000324288 CENPVL3A0A0U1RRI6 287 aa6.05□□□□□ -1.44
CIITA-201ENST00000324288 C2orf70A6NJV1 201 aa6.05□□□□□ -1.44
CIITA-201ENST00000324288 CR1P17927 2039 aa6.04□□□□□ -1.44
CIITA-201ENST00000324288 A0A0J9YXY3 114 aa6.04□□□□□ -1.44
CIITA-201ENST00000324288 I3L2K1 104 aa6.04□□□□□ -1.44
CIITA-201ENST00000324288 POM121L12Q8N7R1 296 aa6.04□□□□□ -1.44
CIITA-201ENST00000324288 TMEM256-PLSCR3K7ERE1 68 aa6.04□□□□□ -1.44
CIITA-201ENST00000324288 C11orf53Q8IXP5 236 aa6.04□□□□□ -1.44
CIITA-201ENST00000324288 RBX1P62877 108 aa6.04□□□□□ -1.44
CIITA-201ENST00000324288 WFDC13Q8IUB5 93 aa6.04□□□□□ -1.44
CIITA-201ENST00000324288 H3BUA1 57 aa6.04□□□□□ -1.44
CIITA-201ENST00000324288 DEFB113Q30KQ7 82 aa6.04□□□□□ -1.44
CIITA-201ENST00000324288 UQCRQO14949 82 aa6.03□□□□□ -1.44
CIITA-201ENST00000324288 CTRLP40313 264 aa6.03□□□□□ -1.44
CIITA-201ENST00000324288 B9D2Q9BPU9 175 aa6.03□□□□□ -1.44
CIITA-201ENST00000324288 USP17L23D6RBM5 183 aa6.03□□□□□ -1.44
CIITA-201ENST00000324288 SOSTDC1Q6X4U4 206 aa6.03□□□□□ -1.44
CIITA-201ENST00000324288 HIGD2AQ9BW72 106 aa6.03□□□□□ -1.44
CIITA-201ENST00000324288 LINC00322Q6ZN03 302 aaPredicted RBP6.03□□□□□ -1.44
CIITA-201ENST00000324288 FAM30AQ9NZY2 134 aa6.03□□□□□ -1.44
CIITA-201ENST00000324288 JMJD7-PLA2G4BH0Y9G9 81 aa6.02□□□□□ -1.45
CIITA-201ENST00000324288 IGFL3Q6UXB1 125 aa6.02□□□□□ -1.45
CIITA-201ENST00000324288 TRIAP1O43715 76 aa6.02□□□□□ -1.45
CIITA-201ENST00000324288 CXCL5P42830 114 aa6.02□□□□□ -1.45
CIITA-201ENST00000324288 TIMM17BO60830 172 aa6.02□□□□□ -1.45
CIITA-201ENST00000324288 C5orf56Q8N8D9 126 aa6.02□□□□□ -1.45
CIITA-201ENST00000324288 C3orf84H3BNL1 204 aa6.01□□□□□ -1.45
CIITA-201ENST00000324288 IGLV2-8P01709 118 aa6.01□□□□□ -1.45
CIITA-201ENST00000324288 TRBV27A0A0K0K1C4 114 aa6.01□□□□□ -1.45
CIITA-201ENST00000324288 A0A087WZ39 114 aa6.01□□□□□ -1.45
CIITA-201ENST00000324288 DCANP1Q8TF63 244 aa6.01□□□□□ -1.45
CIITA-201ENST00000324288 H3BQ85 93 aa6.01□□□□□ -1.45
CIITA-201ENST00000324288 INSL3P51460 131 aa6.01□□□□□ -1.45
CIITA-201ENST00000324288 C22orf34Q6ZV56 151 aa6.01□□□□□ -1.45
CIITA-201ENST00000324288 LINC00467Q9BRT7 94 aa6.01□□□□□ -1.45
CIITA-201ENST00000324288 WT1P19544 449 aaPredicted RBP6□□□□□ -1.45
CIITA-201ENST00000324288 UNQ9165/PRO28630Q6UXU0 137 aa6□□□□□ -1.45
CIITA-201ENST00000324288 IGLV11-55A0A075B6I3 123 aa6□□□□□ -1.45
CIITA-201ENST00000324288 A0A1B0GXF2 115 aa6□□□□□ -1.45
CIITA-201ENST00000324288 FAM19A5Q7Z5A7 132 aaPredicted RBP6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms