RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 ADIRFQ15847 76 aa10.62□□□□□ -0.71
HDDC2-201ENST00000318787 IQCJQ1A5X6 159 aa10.62□□□□□ -0.71
HDDC2-201ENST00000318787 LINC00269Q8N2A0 174 aa10.62□□□□□ -0.71
HDDC2-201ENST00000318787 RPL39LQ96EH5 51 aaKnown RBP10.62□□□□□ -0.71
HDDC2-201ENST00000318787 HIGD1CA8MV81 97 aa10.61□□□□□ -0.71
HDDC2-201ENST00000318787 XGP55808 180 aa10.61□□□□□ -0.71
HDDC2-201ENST00000318787 TMEM241Q24JQ0 296 aa10.61□□□□□ -0.71
HDDC2-201ENST00000318787 CT83Q5H943 113 aa10.61□□□□□ -0.71
HDDC2-201ENST00000318787 SRSF3P84103 164 aaKnown RBP10.6□□□□□ -0.71
HDDC2-201ENST00000318787 PEA15Q15121 130 aa10.6□□□□□ -0.71
HDDC2-201ENST00000318787 LINC01620Q4KN68 170 aa10.6□□□□□ -0.71
HDDC2-201ENST00000318787 TSKUQ8WUA8 353 aa10.6□□□□□ -0.71
HDDC2-201ENST00000318787 OSTCQ9NRP0 149 aa10.6□□□□□ -0.71
HDDC2-201ENST00000318787 IGLV10-54A0A075B6I4 117 aa10.59□□□□□ -0.71
HDDC2-201ENST00000318787 A0A1B0GUT8 65 aa10.59□□□□□ -0.71
HDDC2-201ENST00000318787 C9JQL5 133 aa10.59□□□□□ -0.71
HDDC2-201ENST00000318787 NDUFS6O75380 124 aaKnown RBP10.59□□□□□ -0.71
HDDC2-201ENST00000318787 SMR3BP02814 79 aaPredicted RBP10.59□□□□□ -0.71
HDDC2-201ENST00000318787 MIAQ16674 131 aa10.59□□□□□ -0.71
HDDC2-201ENST00000318787 EPM2AB3EWF7 344 aa10.58□□□□□ -0.72
HDDC2-201ENST00000318787 RPL23P62829 140 aaKnown RBP10.58□□□□□ -0.72
HDDC2-201ENST00000318787 FAM74A3Q4VXF1 159 aa10.58□□□□□ -0.72
HDDC2-201ENST00000318787 ISOC2Q96AB3 205 aa10.58□□□□□ -0.72
HDDC2-201ENST00000318787 NAT8Q9UHE5 227 aa10.58□□□□□ -0.72
HDDC2-201ENST00000318787 REG3AQ06141 175 aa10.57□□□□□ -0.72
HDDC2-201ENST00000318787 GFRA4Q9GZZ7 299 aa10.57□□□□□ -0.72
HDDC2-201ENST00000318787 V9GYV3 84 aa10.57□□□□□ -0.72
HDDC2-201ENST00000318787 IGLV4-60A0A075B6I1 120 aa10.56□□□□□ -0.72
HDDC2-201ENST00000318787 IGKV3OR2-268A0A0C4DH90 116 aa10.56□□□□□ -0.72
HDDC2-201ENST00000318787 FRZBQ92765 325 aa10.56□□□□□ -0.72
HDDC2-201ENST00000318787 SDHAF1A6NFY7 115 aa10.55□□□□□ -0.72
HDDC2-201ENST00000318787 PMCHP20382 165 aa10.55□□□□□ -0.72
HDDC2-201ENST00000318787 AMMECR1LQ6DCA0 310 aa10.55□□□□□ -0.72
HDDC2-201ENST00000318787 C20orf203Q8NBC4 194 aa10.55□□□□□ -0.72
HDDC2-201ENST00000318787 TMEM70Q9BUB7 260 aa10.55□□□□□ -0.72
HDDC2-201ENST00000318787 FAM30AQ9NZY2 134 aa10.55□□□□□ -0.72
HDDC2-201ENST00000318787 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.54□□□□□ -0.72
HDDC2-201ENST00000318787 IGKV2-29A2NJV5 120 aaPredicted RBP10.54□□□□□ -0.72
HDDC2-201ENST00000318787 USP17L23D6RBM5 183 aa10.54□□□□□ -0.72
HDDC2-201ENST00000318787 APCSP02743 223 aa10.54□□□□□ -0.72
HDDC2-201ENST00000318787 RIGQ13278 110 aa10.54□□□□□ -0.72
HDDC2-201ENST00000318787 C14orf177Q52M58 125 aa10.54□□□□□ -0.72
HDDC2-201ENST00000318787 Q5VSD8 79 aa10.54□□□□□ -0.72
HDDC2-201ENST00000318787 RNASEKQ6P5S7 137 aaKnown RBP10.54□□□□□ -0.72
HDDC2-201ENST00000318787 AMN1Q8IY45 258 aa10.54□□□□□ -0.72
HDDC2-201ENST00000318787 NUP35Q8NFH5 326 aa10.54□□□□□ -0.72
HDDC2-201ENST00000318787 PRR34Q9NV39 138 aa10.54□□□□□ -0.72
HDDC2-201ENST00000318787 LOC100996750A0A140TA64 210 aa10.53□□□□□ -0.72
HDDC2-201ENST00000318787 FAM231BA6NCW3 169 aa10.53□□□□□ -0.72
HDDC2-201ENST00000318787 GAS8-AS1O95177 125 aa10.53□□□□□ -0.72
HDDC2-201ENST00000318787 KRTAP4-6Q9BYQ5 205 aa10.53□□□□□ -0.72
HDDC2-201ENST00000318787 TMEM191AQ9H0A3 160 aa10.53□□□□□ -0.72
HDDC2-201ENST00000318787 ST20Q9HBF5 79 aa10.53□□□□□ -0.72
HDDC2-201ENST00000318787 NAT8BQ9UHF3 227 aa10.53□□□□□ -0.72
HDDC2-201ENST00000318787 FAT1Q14517 4588 aa10.53□□□□□ -0.72
HDDC2-201ENST00000318787 NCR2O95944 276 aa10.52□□□□□ -0.72
HDDC2-201ENST00000318787 A0A1B0GUV1 79 aa10.52□□□□□ -0.73
HDDC2-201ENST00000318787 SMKR1H3BMG3 65 aa10.52□□□□□ -0.73
HDDC2-201ENST00000318787 I3L3M4 83 aa10.52□□□□□ -0.73
HDDC2-201ENST00000318787 RAB4AP20338 218 aa10.52□□□□□ -0.73
HDDC2-201ENST00000318787 CAMPP49913 170 aa10.52□□□□□ -0.73
HDDC2-201ENST00000318787 RPS10P46783 165 aaKnown RBP10.51□□□□□ -0.73
HDDC2-201ENST00000318787 RAB14P61106 215 aa10.51□□□□□ -0.73
HDDC2-201ENST00000318787 RNF185Q96GF1 192 aa10.51□□□□□ -0.73
HDDC2-201ENST00000318787 SMDT1Q9H4I9 107 aa10.51□□□□□ -0.73
HDDC2-201ENST00000318787 TMEM242Q9NWH2 141 aa10.51□□□□□ -0.73
HDDC2-201ENST00000318787 FAM229AH3BQW9 127 aa10.5□□□□□ -0.73
HDDC2-201ENST00000318787 MRAP2Q96G30 205 aa10.5□□□□□ -0.73
HDDC2-201ENST00000318787 TRAV8-4A0A0B4J246 113 aa10.49□□□□□ -0.73
HDDC2-201ENST00000318787 BTF3L4Q96K17 158 aa10.49□□□□□ -0.73
HDDC2-201ENST00000318787 TRBV6-5A0A0K0K1A5 114 aa10.48□□□□□ -0.73
HDDC2-201ENST00000318787 SMIM27A0A1W2PRY6 76 aa10.48□□□□□ -0.73
HDDC2-201ENST00000318787 PRSS1P07477 247 aa10.48□□□□□ -0.73
HDDC2-201ENST00000318787 FGF6P10767 208 aa10.48□□□□□ -0.73
HDDC2-201ENST00000318787 MRPL54Q6P161 138 aaKnown RBP10.48□□□□□ -0.73
HDDC2-201ENST00000318787 KRTAP26-1Q6PEX3 210 aa10.48□□□□□ -0.73
HDDC2-201ENST00000318787 hDV102S1A0JD36 115 aa10.47□□□□□ -0.73
HDDC2-201ENST00000318787 TSHBP01222 138 aa10.47□□□□□ -0.73
HDDC2-201ENST00000318787 FCER1GP30273 86 aa10.47□□□□□ -0.73
HDDC2-201ENST00000318787 TMEM101Q96IK0 257 aa10.47□□□□□ -0.73
HDDC2-201ENST00000318787 GAGE12HA6NDE8 117 aa10.46□□□□□ -0.74
HDDC2-201ENST00000318787 INAFM2P0DMQ5 153 aa10.46□□□□□ -0.74
HDDC2-201ENST00000318787 H7C423 109 aa10.45□□□□□ -0.74
HDDC2-201ENST00000318787 MRPL51Q4U2R6 128 aaKnown RBP10.45□□□□□ -0.74
HDDC2-201ENST00000318787 Q6ZSA8 131 aa10.45□□□□□ -0.74
HDDC2-201ENST00000318787 FAM104BQ5XKR9 115 aa10.44□□□□□ -0.74
HDDC2-201ENST00000318787 SCXQ7RTU7 201 aa10.44□□□□□ -0.74
HDDC2-201ENST00000318787 OR5A1Q8NGJ0 315 aa10.44□□□□□ -0.74
HDDC2-201ENST00000318787 DNAH8Q96JB1 4490 aa10.43□□□□□ -0.74
HDDC2-201ENST00000318787 C7orf77A4D0Y5 90 aa10.43□□□□□ -0.74
HDDC2-201ENST00000318787 PPP1R17O96001 155 aa10.43□□□□□ -0.74
HDDC2-201ENST00000318787 CKS2P33552 79 aa10.43□□□□□ -0.74
HDDC2-201ENST00000318787 POLR2KP53803 58 aaKnown RBP10.43□□□□□ -0.74
HDDC2-201ENST00000318787 SUMO2P61956 95 aaKnown RBP10.43□□□□□ -0.74
HDDC2-201ENST00000318787 HBBP68871 147 aa10.43□□□□□ -0.74
HDDC2-201ENST00000318787 AP5S1Q9NUS5 200 aa10.43□□□□□ -0.74
HDDC2-201ENST00000318787 TRBV27A0A0K0K1C4 114 aa10.42□□□□□ -0.74
HDDC2-201ENST00000318787 A0A1B0GW15 77 aa10.42□□□□□ -0.74
HDDC2-201ENST00000318787 VCYO14598 125 aa10.42□□□□□ -0.74
HDDC2-201ENST00000318787 S100A8P05109 93 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms