RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 VSIG2Q96IQ7 327 aa12.72□□□□□ -0.37
HMGA1-201ENST00000311487 PAM16Q9Y3D7 125 aa12.72□□□□□ -0.37
HMGA1-201ENST00000311487 A0A096LNJ9 63 aa12.72□□□□□ -0.37
HMGA1-201ENST00000311487 GATA1P15976 413 aaPredicted RBP12.72□□□□□ -0.37
HMGA1-201ENST00000311487 LINC00315P59091 139 aa12.72□□□□□ -0.37
HMGA1-201ENST00000311487 CEMP1Q6PRD7 247 aaPredicted RBP12.72□□□□□ -0.37
HMGA1-201ENST00000311487 TNFRSF6BO95407 300 aa12.71□□□□□ -0.37
HMGA1-201ENST00000311487 MAP1LC3AQ9H492 121 aa12.71□□□□□ -0.37
HMGA1-201ENST00000311487 SYS1-DBNDD2H3BUS1 97 aa12.7□□□□□ -0.38
HMGA1-201ENST00000311487 PAX4O43316 350 aa12.7□□□□□ -0.38
HMGA1-201ENST00000311487 NUDT3O95989 172 aa12.7□□□□□ -0.38
HMGA1-201ENST00000311487 CRYBA4P53673 196 aa12.7□□□□□ -0.38
HMGA1-201ENST00000311487 PIK3CD-AS1Q5SR53 167 aa12.7□□□□□ -0.38
HMGA1-201ENST00000311487 DPH3P1Q9H4G8 78 aa12.7□□□□□ -0.38
HMGA1-201ENST00000311487 HSPB8Q9UJY1 196 aa12.7□□□□□ -0.38
HMGA1-201ENST00000311487 ATOH7Q8N100 152 aa12.69□□□□□ -0.38
HMGA1-201ENST00000311487 DEFB104AQ8WTQ1 72 aa12.69□□□□□ -0.38
HMGA1-201ENST00000311487 PRO0255Q9UI72 69 aa12.69□□□□□ -0.38
HMGA1-201ENST00000311487 RBX1P62877 108 aa12.68□□□□□ -0.38
HMGA1-201ENST00000311487 ZFP2Q6ZN57 461 aa12.68□□□□□ -0.38
HMGA1-201ENST00000311487 NRACQ8N912 160 aa12.68□□□□□ -0.38
HMGA1-201ENST00000311487 LINC01546A6NGU7 62 aa12.68□□□□□ -0.38
HMGA1-201ENST00000311487 GYPEP15421 78 aa12.68□□□□□ -0.38
HMGA1-201ENST00000311487 CASC10Q5T4H9 136 aa12.68□□□□□ -0.38
HMGA1-201ENST00000311487 SUMO4Q6EEV6 95 aa12.68□□□□□ -0.38
HMGA1-201ENST00000311487 MAP1LC3CQ9BXW4 147 aa12.68□□□□□ -0.38
HMGA1-201ENST00000311487 NUPR2A6NF83 97 aa12.67□□□□□ -0.38
HMGA1-201ENST00000311487 SPATA45Q537H7 98 aa12.67□□□□□ -0.38
HMGA1-201ENST00000311487 GAGE12JA6NER3 117 aa12.66□□□□□ -0.38
HMGA1-201ENST00000311487 RHODO00212 210 aa12.66□□□□□ -0.38
HMGA1-201ENST00000311487 GAGE4Q13068 117 aa12.66□□□□□ -0.38
HMGA1-201ENST00000311487 GAGE5Q13069 117 aa12.66□□□□□ -0.38
HMGA1-201ENST00000311487 GAGE13Q4V321 117 aa12.66□□□□□ -0.38
HMGA1-201ENST00000311487 MRAP2Q96G30 205 aa12.66□□□□□ -0.38
HMGA1-201ENST00000311487 NXT2Q9NPJ8 142 aaKnown RBP12.66□□□□□ -0.38
HMGA1-201ENST00000311487 K7EQD1 137 aa12.66□□□□□ -0.38
HMGA1-201ENST00000311487 PET117Q6UWS5 81 aa12.66□□□□□ -0.38
HMGA1-201ENST00000311487 IGLV2-18A0A075B6J9 118 aa12.65□□□□□ -0.38
HMGA1-201ENST00000311487 PRSS47A8MTI9 375 aa12.65□□□□□ -0.38
HMGA1-201ENST00000311487 HBDP02042 147 aa12.65□□□□□ -0.38
HMGA1-201ENST00000311487 MAJINQ3KP22 176 aa12.65□□□□□ -0.38
HMGA1-201ENST00000311487 RPL39LQ96EH5 51 aaKnown RBP12.65□□□□□ -0.38
HMGA1-201ENST00000311487 PLECQ15149 4684 aaKnown RBP12.65□□□□□ -0.38
HMGA1-201ENST00000311487 C20orf202A1L168 122 aa12.64□□□□□ -0.39
HMGA1-201ENST00000311487 Q8N8P6 123 aa12.64□□□□□ -0.39
HMGA1-201ENST00000311487 TRBV6-4A0A1B0GX49 114 aa12.64□□□□□ -0.39
HMGA1-201ENST00000311487 M0QY20 66 aa12.64□□□□□ -0.39
HMGA1-201ENST00000311487 MIEN1Q9BRT3 115 aa12.64□□□□□ -0.39
HMGA1-201ENST00000311487 KLK5Q9Y337 293 aaPredicted RBP12.64□□□□□ -0.39
HMGA1-201ENST00000311487 TRAV9-2A0A087WT02 112 aa12.63□□□□□ -0.39
HMGA1-201ENST00000311487 CIDEAO60543 219 aa12.63□□□□□ -0.39
HMGA1-201ENST00000311487 ZNRF2Q8NHG8 242 aa12.63□□□□□ -0.39
HMGA1-201ENST00000311487 PRADC1Q9BSG0 188 aa12.63□□□□□ -0.39
HMGA1-201ENST00000311487 DYNC2H1Q8NCM8 4307 aaKnown RBP12.63□□□□□ -0.39
HMGA1-201ENST00000311487 RHOHQ15669 191 aa12.62□□□□□ -0.39
HMGA1-201ENST00000311487 IGHV3-38A0A0C4DH36 116 aa12.62□□□□□ -0.39
HMGA1-201ENST00000311487 HSBP1L1C9JCN9 74 aa12.62□□□□□ -0.39
HMGA1-201ENST00000311487 H0Y8G0 127 aa12.62□□□□□ -0.39
HMGA1-201ENST00000311487 K7EP13 123 aa12.62□□□□□ -0.39
HMGA1-201ENST00000311487 LINC01545Q5VT33 79 aa12.62□□□□□ -0.39
HMGA1-201ENST00000311487 NEXN-AS1Q8NBZ9 246 aa12.62□□□□□ -0.39
HMGA1-201ENST00000311487 APLNQ9ULZ1 77 aa12.62□□□□□ -0.39
HMGA1-201ENST00000311487 FCER1GP30273 86 aa12.6□□□□□ -0.39
HMGA1-201ENST00000311487 C3orf84H3BNL1 204 aa12.6□□□□□ -0.39
HMGA1-201ENST00000311487 IGLC3P0DOY3 106 aa12.6□□□□□ -0.39
HMGA1-201ENST00000311487 COL5A1-AS1Q5SY13 56 aa12.6□□□□□ -0.39
HMGA1-201ENST00000311487 ICOSQ9Y6W8 199 aa12.6□□□□□ -0.39
HMGA1-201ENST00000311487 NEGR1Q7Z3B1 354 aa12.59□□□□□ -0.39
HMGA1-201ENST00000311487 PMCHL2Q9BQD1 86 aa12.58□□□□□ -0.39
HMGA1-201ENST00000311487 SMIM2Q9BVW6 85 aa12.58□□□□□ -0.39
HMGA1-201ENST00000311487 IFI27L1Q96BM0 104 aa12.58□□□□□ -0.4
HMGA1-201ENST00000311487 hDV102S1A0JD36 115 aa12.57□□□□□ -0.4
HMGA1-201ENST00000311487 MRPL23Q16540 153 aaKnown RBP12.57□□□□□ -0.4
HMGA1-201ENST00000311487 C20orf78Q9BR46 151 aa12.57□□□□□ -0.4
HMGA1-201ENST00000311487 UQCR10Q9UDW1 63 aa12.57□□□□□ -0.4
HMGA1-201ENST00000311487 TNFRSF18Q9Y5U5 241 aa12.57□□□□□ -0.4
HMGA1-201ENST00000311487 TRBV7-3A0A075B6L6 115 aa12.56□□□□□ -0.4
HMGA1-201ENST00000311487 SUMO2P61956 95 aaKnown RBP12.56□□□□□ -0.4
HMGA1-201ENST00000311487 RPL36AP83881 106 aaKnown RBP12.56□□□□□ -0.4
HMGA1-201ENST00000311487 LAGE3Q14657 143 aa12.56□□□□□ -0.4
HMGA1-201ENST00000311487 ESRGQ1W209 222 aa12.56□□□□□ -0.4
HMGA1-201ENST00000311487 RPL36ALQ969Q0 106 aaKnown RBP12.56□□□□□ -0.4
HMGA1-201ENST00000311487 LGALS9CQ6DKI2 356 aa12.56□□□□□ -0.4
HMGA1-201ENST00000311487 H3BNG1 76 aa12.55□□□□□ -0.4
HMGA1-201ENST00000311487 H7C1H1 209 aa12.55□□□□□ -0.4
HMGA1-201ENST00000311487 C15orf53Q8NAA6 179 aa12.55□□□□□ -0.4
HMGA1-201ENST00000311487 ATP6V0E2Q8NHE4 81 aa12.55□□□□□ -0.4
HMGA1-201ENST00000311487 ORAOV1Q8WV07 137 aa12.55□□□□□ -0.4
HMGA1-201ENST00000311487 ST20Q9HBF5 79 aa12.54□□□□□ -0.4
HMGA1-201ENST00000311487 TRBV10-1A0A0K0K1A3 114 aa12.54□□□□□ -0.4
HMGA1-201ENST00000311487 PPP1R17O96001 155 aa12.54□□□□□ -0.4
HMGA1-201ENST00000311487 UBE2D3P61077 147 aa12.54□□□□□ -0.4
HMGA1-201ENST00000311487 UBE2D2P62837 147 aa12.54□□□□□ -0.4
HMGA1-201ENST00000311487 LYPD5Q6UWN5 251 aa12.54□□□□□ -0.4
HMGA1-201ENST00000311487 LINC00694P0DN24 101 aa12.52□□□□□ -0.4
HMGA1-201ENST00000311487 LINC00588Q9Y4M8 146 aa12.52□□□□□ -0.4
HMGA1-201ENST00000311487 Q6ZN92 141 aa12.52□□□□□ -0.41
HMGA1-201ENST00000311487 SDHAF1A6NFY7 115 aa12.51□□□□□ -0.41
HMGA1-201ENST00000311487 K7EMI3 77 aa12.5□□□□□ -0.41
HMGA1-201ENST00000311487 LY6G6CO95867 125 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms