RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 CEBPGP53567 150 aa12.66□□□□□ -0.38
LIME1-201ENST00000309546 BLOC1S1P78537 153 aa12.66□□□□□ -0.38
LIME1-201ENST00000309546 COTL1Q14019 142 aa12.66□□□□□ -0.38
LIME1-201ENST00000309546 KRTAP26-1Q6PEX3 210 aa12.66□□□□□ -0.38
LIME1-201ENST00000309546 PGLYRP4Q96LB8 373 aa12.66□□□□□ -0.38
LIME1-201ENST00000309546 CNFNQ9BYD5 112 aa12.66□□□□□ -0.38
LIME1-201ENST00000309546 J3QL48 77 aa12.65□□□□□ -0.38
LIME1-201ENST00000309546 GFRA4Q9GZZ7 299 aa12.65□□□□□ -0.38
LIME1-201ENST00000309546 SMIM15Q7Z3B0 74 aa12.64□□□□□ -0.39
LIME1-201ENST00000309546 GATD1Q8NB37 220 aa12.64□□□□□ -0.39
LIME1-201ENST00000309546 GTSF1Q8WW33 167 aa12.64□□□□□ -0.39
LIME1-201ENST00000309546 A0A1B0GUV1 79 aa12.63□□□□□ -0.39
LIME1-201ENST00000309546 TMEM250H0YL14 139 aa12.63□□□□□ -0.39
LIME1-201ENST00000309546 GATCO43716 136 aaKnown RBP12.63□□□□□ -0.39
LIME1-201ENST00000309546 DGAT2L7PQ6IED9 249 aa12.62□□□□□ -0.39
LIME1-201ENST00000309546 RPL39LQ96EH5 51 aaKnown RBP12.62□□□□□ -0.39
LIME1-201ENST00000309546 TRAV8-4A0A0B4J246 113 aa12.61□□□□□ -0.39
LIME1-201ENST00000309546 FOXA3P55318 350 aaPredicted RBP12.61□□□□□ -0.39
LIME1-201ENST00000309546 IGKV3OR2-268A0A0C4DH90 116 aa12.6□□□□□ -0.39
LIME1-201ENST00000309546 hDV102S1A0JD36 115 aa12.6□□□□□ -0.39
LIME1-201ENST00000309546 C9orf163Q8N9P6 203 aa12.6□□□□□ -0.39
LIME1-201ENST00000309546 CLRN3Q8NCR9 226 aa12.6□□□□□ -0.39
LIME1-201ENST00000309546 A8MWL6 223 aa12.59□□□□□ -0.39
LIME1-201ENST00000309546 FAM231DQ6ZW35 169 aa12.59□□□□□ -0.39
LIME1-201ENST00000309546 LYPD6BQ8NI32 183 aa12.58□□□□□ -0.4
LIME1-201ENST00000309546 EIF5A2Q9GZV4 153 aaKnown RBP12.58□□□□□ -0.4
LIME1-201ENST00000309546 APCSP02743 223 aa12.57□□□□□ -0.4
LIME1-201ENST00000309546 AMMECR1LQ6DCA0 310 aa12.57□□□□□ -0.4
LIME1-201ENST00000309546 BORCS7Q96B45 105 aa12.57□□□□□ -0.4
LIME1-201ENST00000309546 SMIM7Q9BQ49 75 aa12.57□□□□□ -0.4
LIME1-201ENST00000309546 AP5S1Q9NUS5 200 aa12.57□□□□□ -0.4
LIME1-201ENST00000309546 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.57□□□□□ -0.4
LIME1-201ENST00000309546 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.56□□□□□ -0.4
LIME1-201ENST00000309546 IGKV2-29A2NJV5 120 aaPredicted RBP12.56□□□□□ -0.4
LIME1-201ENST00000309546 KRTAP10-4P60372 401 aaPredicted RBP12.56□□□□□ -0.4
LIME1-201ENST00000309546 CT83Q5H943 113 aa12.56□□□□□ -0.4
LIME1-201ENST00000309546 RNASEKQ6P5S7 137 aaKnown RBP12.56□□□□□ -0.4
LIME1-201ENST00000309546 SDHAF1A6NFY7 115 aa12.55□□□□□ -0.4
LIME1-201ENST00000309546 TEX261Q6UWH6 196 aa12.55□□□□□ -0.4
LIME1-201ENST00000309546 GAGE12HA6NDE8 117 aa12.54□□□□□ -0.4
LIME1-201ENST00000309546 KRTAP29-1A8MX34 341 aaPredicted RBP12.54□□□□□ -0.4
LIME1-201ENST00000309546 PANO1I0J062 215 aa12.54□□□□□ -0.4
LIME1-201ENST00000309546 NCR2O95944 276 aa12.54□□□□□ -0.4
LIME1-201ENST00000309546 RPL37AP61513 92 aaKnown RBP12.54□□□□□ -0.4
LIME1-201ENST00000309546 CNBPP62633 177 aaKnown RBP12.54□□□□□ -0.4
LIME1-201ENST00000309546 ZNF727A8MUV8 499 aa12.53□□□□□ -0.4
LIME1-201ENST00000309546 PMCHP20382 165 aa12.53□□□□□ -0.4
LIME1-201ENST00000309546 SDIM1Q6ZPB5 146 aa12.53□□□□□ -0.4
LIME1-201ENST00000309546 LINC01551Q86U37 167 aa12.53□□□□□ -0.4
LIME1-201ENST00000309546 FAM210AQ96ND0 272 aa12.53□□□□□ -0.4
LIME1-201ENST00000309546 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.52□□□□□ -0.41
LIME1-201ENST00000309546 HIGD1CA8MV81 97 aa12.52□□□□□ -0.41
LIME1-201ENST00000309546 FGF6P10767 208 aa12.52□□□□□ -0.41
LIME1-201ENST00000309546 IGHV3-64A0A075B6Q5 118 aa12.51□□□□□ -0.41
LIME1-201ENST00000309546 I3L3M4 83 aa12.51□□□□□ -0.41
LIME1-201ENST00000309546 GAS8-AS1O95177 125 aa12.51□□□□□ -0.41
LIME1-201ENST00000309546 TSKUQ8WUA8 353 aa12.51□□□□□ -0.41
LIME1-201ENST00000309546 PKHD1L1Q86WI1 4243 aa12.51□□□□□ -0.41
LIME1-201ENST00000309546 A0A1B0GUT8 65 aa12.5□□□□□ -0.41
LIME1-201ENST00000309546 H7C423 109 aa12.5□□□□□ -0.41
LIME1-201ENST00000309546 SRP19P09132 144 aaKnown RBP12.5□□□□□ -0.41
LIME1-201ENST00000309546 C15orf56Q8N910 161 aa12.5□□□□□ -0.41
LIME1-201ENST00000309546 CHCHD10Q8WYQ3 142 aaPredicted RBP12.5□□□□□ -0.41
LIME1-201ENST00000309546 TRBV6-5A0A0K0K1A5 114 aa12.49□□□□□ -0.41
LIME1-201ENST00000309546 SLPIP03973 132 aa12.49□□□□□ -0.41
LIME1-201ENST00000309546 HIGD2BQ4VC39 106 aa12.49□□□□□ -0.41
LIME1-201ENST00000309546 CFAP161Q6P656 301 aa12.49□□□□□ -0.41
LIME1-201ENST00000309546 DPH3Q96FX2 82 aa12.49□□□□□ -0.41
LIME1-201ENST00000309546 ST20Q9HBF5 79 aa12.49□□□□□ -0.41
LIME1-201ENST00000309546 OSTCQ9NRP0 149 aa12.49□□□□□ -0.41
LIME1-201ENST00000309546 TMEM242Q9NWH2 141 aa12.49□□□□□ -0.41
LIME1-201ENST00000309546 NDUFS6O75380 124 aaKnown RBP12.48□□□□□ -0.41
LIME1-201ENST00000309546 CHTF8P0CG12 524 aa12.48□□□□□ -0.41
LIME1-201ENST00000309546 BTF3L4Q96K17 158 aa12.48□□□□□ -0.41
LIME1-201ENST00000309546 TMEM191AQ9H0A3 160 aa12.48□□□□□ -0.41
LIME1-201ENST00000309546 FAM231BA6NCW3 169 aa12.47□□□□□ -0.41
LIME1-201ENST00000309546 ZNF25P17030 456 aaPredicted RBP12.47□□□□□ -0.41
LIME1-201ENST00000309546 AMN1Q8IY45 258 aa12.47□□□□□ -0.41
LIME1-201ENST00000309546 RNF185Q96GF1 192 aa12.47□□□□□ -0.41
LIME1-201ENST00000309546 TMEM101Q96IK0 257 aa12.47□□□□□ -0.41
LIME1-201ENST00000309546 LRP1Q07954 4544 aaKnown RBP12.46□□□□□ -0.41
LIME1-201ENST00000309546 FAT3Q8TDW7 4589 aa12.46□□□□□ -0.41
LIME1-201ENST00000309546 TSHBP01222 138 aa12.46□□□□□ -0.41
LIME1-201ENST00000309546 RAB4AP20338 218 aa12.46□□□□□ -0.41
LIME1-201ENST00000309546 RPS10P46783 165 aaKnown RBP12.46□□□□□ -0.41
LIME1-201ENST00000309546 MRAP2Q96G30 205 aa12.46□□□□□ -0.41
LIME1-201ENST00000309546 HNRNPA3P51991 378 aaKnown RBP12.45□□□□□ -0.42
LIME1-201ENST00000309546 CIRBPQ14011 172 aaKnown RBP12.45□□□□□ -0.42
LIME1-201ENST00000309546 OR5A1Q8NGJ0 315 aa12.45□□□□□ -0.42
LIME1-201ENST00000309546 V9GYV3 84 aa12.45□□□□□ -0.42
LIME1-201ENST00000309546 SMKR1H3BMG3 65 aa12.44□□□□□ -0.42
LIME1-201ENST00000309546 XCL1P47992 114 aa12.44□□□□□ -0.42
LIME1-201ENST00000309546 RIGQ13278 110 aa12.44□□□□□ -0.42
LIME1-201ENST00000309546 A0A087WYN8 130 aa12.43□□□□□ -0.42
LIME1-201ENST00000309546 OXTP01178 125 aa12.43□□□□□ -0.42
LIME1-201ENST00000309546 ESDP10768 282 aa12.43□□□□□ -0.42
LIME1-201ENST00000309546 FOXI1Q12951 378 aa12.43□□□□□ -0.42
LIME1-201ENST00000309546 ADIRFQ15847 76 aa12.43□□□□□ -0.42
LIME1-201ENST00000309546 NUP35Q8NFH5 326 aa12.43□□□□□ -0.42
LIME1-201ENST00000309546 SPACA4Q8TDM5 124 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms