RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 APRG1Q8IVJ8 170 aa14.52□□□□□ -0.08
USP48-201ENST00000308271 M0QY20 66 aa14.52□□□□□ -0.09
USP48-201ENST00000308271 XCL1P47992 114 aa14.51□□□□□ -0.09
USP48-201ENST00000308271 UQCRQO14949 82 aa14.51□□□□□ -0.09
USP48-201ENST00000308271 SLURP1P55000 103 aa14.51□□□□□ -0.09
USP48-201ENST00000308271 DEFB136Q30KP8 78 aa14.51□□□□□ -0.09
USP48-201ENST00000308271 C2CD3Q4AC94 2353 aa14.51□□□□□ -0.09
USP48-201ENST00000308271 LECT2O14960 151 aa14.51□□□□□ -0.09
USP48-201ENST00000308271 JMJD7-PLA2G4BH0Y9G9 81 aa14.51□□□□□ -0.09
USP48-201ENST00000308271 POLR2KP53803 58 aaKnown RBP14.5□□□□□ -0.09
USP48-201ENST00000308271 Q8N6K4 173 aa14.5□□□□□ -0.09
USP48-201ENST00000308271 PRO3102Q9H379 93 aa14.5□□□□□ -0.09
USP48-201ENST00000308271 DSCAMO60469 2012 aa14.5□□□□□ -0.09
USP48-201ENST00000308271 ZNF462Q96JM2 2506 aa14.5□□□□□ -0.09
USP48-201ENST00000308271 UBE2D1P51668 147 aa14.49□□□□□ -0.09
USP48-201ENST00000308271 TNFRSF13BO14836 293 aaPredicted RBP14.49□□□□□ -0.09
USP48-201ENST00000308271 RNASE3P12724 160 aaKnown RBP14.49□□□□□ -0.09
USP48-201ENST00000308271 A6NDX4 124 aa14.49□□□□□ -0.09
USP48-201ENST00000308271 HIST2H2BCQ6DN03 193 aa14.49□□□□□ -0.09
USP48-201ENST00000308271 HIST2H2BDQ6DRA6 164 aa14.49□□□□□ -0.09
USP48-201ENST00000308271 MIR7-3HGQ8N6C7 128 aa14.49□□□□□ -0.09
USP48-201ENST00000308271 CLUHP3Q96NS8 147 aa14.49□□□□□ -0.09
USP48-201ENST00000308271 LMO4P61968 165 aa14.48□□□□□ -0.09
USP48-201ENST00000308271 PRR9Q5T870 116 aa14.48□□□□□ -0.09
USP48-201ENST00000308271 Q6ZS46 218 aa14.48□□□□□ -0.09
USP48-201ENST00000308271 C10orf105Q8TEF2 133 aa14.48□□□□□ -0.09
USP48-201ENST00000308271 CDKN2A-AS1Q9UH64 79 aa14.48□□□□□ -0.09
USP48-201ENST00000308271 PYGO1Q9Y3Y4 419 aa14.47□□□□□ -0.09
USP48-201ENST00000308271 TRBV10-1A0A0K0K1A3 114 aa14.47□□□□□ -0.09
USP48-201ENST00000308271 ZNF561-AS1K7EIQ3 104 aa14.47□□□□□ -0.09
USP48-201ENST00000308271 NAV2Q8IVL1 2488 aa14.47□□□□□ -0.09
USP48-201ENST00000308271 ANGP03950 147 aaKnown RBP14.47□□□□□ -0.09
USP48-201ENST00000308271 TMEM61Q8N0U2 210 aa14.47□□□□□ -0.09
USP48-201ENST00000308271 IGHV4-30-2A0A087WSY4 118 aa14.46□□□□□ -0.09
USP48-201ENST00000308271 CENPFP49454 3210 aa14.46□□□□□ -0.09
USP48-201ENST00000308271 Q9HAA7 133 aa14.46□□□□□ -0.1
USP48-201ENST00000308271 K7EQG2 157 aa14.45□□□□□ -0.1
USP48-201ENST00000308271 RBM3P98179 157 aaKnown RBP14.45□□□□□ -0.1
USP48-201ENST00000308271 IMUPQ9GZP8 106 aa14.45□□□□□ -0.1
USP48-201ENST00000308271 DAD1P61803 113 aa14.45□□□□□ -0.1
USP48-201ENST00000308271 CLPSL2Q6UWE3 100 aa14.45□□□□□ -0.1
USP48-201ENST00000308271 hADV29S1A0JD25 119 aa14.44□□□□□ -0.1
USP48-201ENST00000308271 C16orf74Q96GX8 76 aa14.44□□□□□ -0.1
USP48-201ENST00000308271 LINC00308Q8TCZ7 52 aa14.44□□□□□ -0.1
USP48-201ENST00000308271 TMEM263Q8WUH6 116 aaKnown RBP14.44□□□□□ -0.1
USP48-201ENST00000308271 PSMG3-AS1Q96PY0 264 aa14.44□□□□□ -0.1
USP48-201ENST00000308271 UBE2D3P61077 147 aa14.44□□□□□ -0.1
USP48-201ENST00000308271 UBE2D2P62837 147 aa14.44□□□□□ -0.1
USP48-201ENST00000308271 TIMM17BO60830 172 aa14.43□□□□□ -0.1
USP48-201ENST00000308271 IGIPA6NJ69 53 aa14.43□□□□□ -0.1
USP48-201ENST00000308271 Q6Q795 121 aa14.43□□□□□ -0.1
USP48-201ENST00000308271 ARHGAP32A7KAX9 2087 aa14.43□□□□□ -0.1
USP48-201ENST00000308271 F5H768 121 aa14.43□□□□□ -0.1
USP48-201ENST00000308271 J3QKU1 62 aa14.43□□□□□ -0.1
USP48-201ENST00000308271 LST1O00453 97 aa14.42□□□□□ -0.1
USP48-201ENST00000308271 NDUFA1O15239 70 aa14.42□□□□□ -0.1
USP48-201ENST00000308271 PSMB8P28062 276 aa14.42□□□□□ -0.1
USP48-201ENST00000308271 ANKRD11Q6UB99 2663 aaPredicted RBP14.42□□□□□ -0.1
USP48-201ENST00000308271 ZFYVE26Q68DK2 2539 aa14.42□□□□□ -0.1
USP48-201ENST00000308271 HIVEP3Q5T1R4 2406 aa14.42□□□□□ -0.1
USP48-201ENST00000308271 TIRAPP58753 221 aa14.42□□□□□ -0.1
USP48-201ENST00000308271 C3orf22Q8N5N4 141 aa14.42□□□□□ -0.1
USP48-201ENST00000308271 LINC00467Q9BRT7 94 aa14.42□□□□□ -0.1
USP48-201ENST00000308271 C14orf132Q9NPU4 83 aa14.42□□□□□ -0.1
USP48-201ENST00000308271 HIVEP2P31629 2446 aa14.42□□□□□ -0.1
USP48-201ENST00000308271 F8WEM9 126 aa14.42□□□□□ -0.1
USP48-201ENST00000308271 DPH3Q96FX2 82 aa14.42□□□□□ -0.1
USP48-201ENST00000308271 CLPSL1A2RUU4 121 aa14.41□□□□□ -0.1
USP48-201ENST00000308271 KLLNB2CW77 178 aa14.41□□□□□ -0.1
USP48-201ENST00000308271 TSHBP01222 138 aa14.41□□□□□ -0.1
USP48-201ENST00000308271 TMEM258P61165 79 aa14.41□□□□□ -0.1
USP48-201ENST00000308271 TET2Q6N021 2002 aaPredicted RBP14.4□□□□□ -0.1
USP48-201ENST00000308271 IGLV2-18A0A075B6J9 118 aa14.4□□□□□ -0.1
USP48-201ENST00000308271 TRAV25A0A0B4J276 109 aa14.4□□□□□ -0.1
USP48-201ENST00000308271 SORL1Q92673 2214 aa14.4□□□□□ -0.1
USP48-201ENST00000308271 A0A096LPF7 62 aa14.4□□□□□ -0.1
USP48-201ENST00000308271 CCL24O00175 119 aa14.39□□□□□ -0.11
USP48-201ENST00000308271 CCDC179H3BU77 68 aa14.39□□□□□ -0.11
USP48-201ENST00000308271 TMEM256-PLSCR3K7ERE1 68 aa14.39□□□□□ -0.11
USP48-201ENST00000308271 H3BQ85 93 aa14.38□□□□□ -0.11
USP48-201ENST00000308271 JMJD1CQ15652 2540 aa14.38□□□□□ -0.11
USP48-201ENST00000308271 Q6ZQT7 251 aa14.36□□□□□ -0.11
USP48-201ENST00000308271 CRYGDP07320 174 aa14.36□□□□□ -0.11
USP48-201ENST00000308271 FAM240AA0A1B0GVK7 77 aa14.36□□□□□ -0.11
USP48-201ENST00000308271 F8W735 103 aaPredicted RBP14.36□□□□□ -0.11
USP48-201ENST00000308271 H7C423 109 aa14.36□□□□□ -0.11
USP48-201ENST00000308271 GYPEP15421 78 aa14.36□□□□□ -0.11
USP48-201ENST00000308271 NKAPP1Q8N9T2 125 aa14.36□□□□□ -0.11
USP48-201ENST00000308271 C9orf85Q96MD7 179 aa14.35□□□□□ -0.11
USP48-201ENST00000308271 PRB1P04280 392 aa14.35□□□□□ -0.11
USP48-201ENST00000308271 Q96MF0 132 aa14.35□□□□□ -0.11
USP48-201ENST00000308271 IGLV4-69A0A075B6H9 119 aa14.35□□□□□ -0.11
USP48-201ENST00000308271 CXCL5P42830 114 aa14.34□□□□□ -0.11
USP48-201ENST00000308271 SDIM1Q6ZPB5 146 aa14.34□□□□□ -0.11
USP48-201ENST00000308271 C11orf71Q6IPW1 123 aa14.34□□□□□ -0.11
USP48-201ENST00000308271 MAP6D1Q9H9H5 199 aa14.34□□□□□ -0.11
USP48-201ENST00000308271 MRGPRG-AS1Q2M3A8 158 aa14.33□□□□□ -0.11
USP48-201ENST00000308271 MRPS36P82909 103 aaKnown RBP14.32□□□□□ -0.12
USP48-201ENST00000308271 AGRNO00468 2067 aa14.32□□□□□ -0.12
USP48-201ENST00000308271 NDUFA7O95182 113 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms