RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 PRELID3AQ96N28 172 aa4.46□□□□□ -1.7
DEPDC4-201ENST00000299185 PRADC1Q9BSG0 188 aa4.46□□□□□ -1.7
DEPDC4-201ENST00000299185 LINC00588Q9Y4M8 146 aa4.46□□□□□ -1.7
DEPDC4-201ENST00000299185 RYR2Q92736 4967 aa4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 SDHAF1A6NFY7 115 aa4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 C1orf196B1AJZ1 125 aa4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 TNFRSF6BO95407 300 aa4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 TSHBP01222 138 aa4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 MT-ND6P03923 174 aa4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 TRGC2P03986 189 aa4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 S100A8P05109 93 aa4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 RPL36AP83881 106 aaKnown RBP4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 NTM-AS1Q6ZSK4 140 aa4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 ATP6V0E2Q8NHE4 81 aa4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 RPL36ALQ969Q0 106 aaKnown RBP4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 MRAP2Q96G30 205 aa4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 KLK5Q9Y337 293 aaPredicted RBP4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 TRAPPC1Q9Y5R8 145 aa4.45□□□□□ -1.7
DEPDC4-201ENST00000299185 IGLV2-18A0A075B6J9 118 aa4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 IGKV2-29A2NJV5 120 aaPredicted RBP4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 PHOX2AO14813 284 aa4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 TCAPO15273 167 aa4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 GAGE6Q13070 117 aa4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 MRPL23Q16540 153 aaKnown RBP4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 UBE2DNLQ8IWF7 75 aa4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 ORMDL3Q8N138 153 aa4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 DNAJC30Q96LL9 226 aa4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 ALKBH7Q9BT30 221 aaPredicted RBP4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 TMEM70Q9BUB7 260 aa4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 SMIM2Q9BVW6 85 aa4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 KRTAP1-5Q9BYS1 174 aa4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 ST20Q9HBF5 79 aa4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 NIT2Q9NQR4 276 aa4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 PLECQ15149 4684 aaKnown RBP4.44□□□□□ -1.7
DEPDC4-201ENST00000299185 DNAH1Q9P2D7 4330 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 TRBV7-3A0A075B6L6 115 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 TRBV10-1A0A0K0K1A3 114 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 C3orf84H3BNL1 204 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 H7C1H1 209 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 LY6G6CO95867 125 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 IGHV3-30P01768 117 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 IGHV3-33P01772 117 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 IGHV3-30-3P0DP02 117 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 IGHV3-30-5P0DP03 117 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 RAB5BP61020 215 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 SUMO2P61956 95 aaKnown RBP4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 PMCHL1Q16048 86 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 CLPSL2Q6UWE3 100 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 LYPD5Q6UWN5 251 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 C15orf53Q8NAA6 179 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 LINC00476Q8WZB0 136 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 URB1-AS1Q96HZ7 61 aa4.43□□□□□ -1.7
DEPDC4-201ENST00000299185 RYR1P21817 5038 aa4.42□□□□□ -1.7
DEPDC4-201ENST00000299185 TRBV6-5A0A0K0K1A5 114 aa4.42□□□□□ -1.7
DEPDC4-201ENST00000299185 M0R2N4 97 aa4.42□□□□□ -1.7
DEPDC4-201ENST00000299185 IFI27P40305 119 aaPredicted RBP4.42□□□□□ -1.7
DEPDC4-201ENST00000299185 AMTP48728 403 aa4.42□□□□□ -1.7
DEPDC4-201ENST00000299185 POLR2KP53803 58 aaKnown RBP4.42□□□□□ -1.7
DEPDC4-201ENST00000299185 RNASE13Q5GAN3 156 aaKnown RBP4.42□□□□□ -1.7
DEPDC4-201ENST00000299185 RNASEKQ6P5S7 137 aaKnown RBP4.42□□□□□ -1.7
DEPDC4-201ENST00000299185 C18orf32Q8TCD1 76 aa4.42□□□□□ -1.7
DEPDC4-201ENST00000299185 CHCHD7Q9BUK0 85 aa4.42□□□□□ -1.7
DEPDC4-201ENST00000299185 GTSF1LQ9H1H1 148 aa4.42□□□□□ -1.7
DEPDC4-201ENST00000299185 MAP1LC3AQ9H492 121 aa4.42□□□□□ -1.7
DEPDC4-201ENST00000299185 MRPS16Q9Y3D3 137 aaKnown RBP4.42□□□□□ -1.7
DEPDC4-201ENST00000299185 HERC2O95714 4834 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 KRTAP29-1A8MX34 341 aaPredicted RBP4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 H3BNG1 76 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 CIDEAO60543 219 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 HIST1H2BKO60814 126 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 HIST1H2BJP06899 126 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 PMCHP20382 165 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 HIST1H2BOP23527 126 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 HIST1H2BBP33778 126 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 HIST1H2BDP58876 126 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 HIST1H2BCP62807 126 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 RPL39P62891 51 aaKnown RBP4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 COTL1Q14019 142 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 HIST2H2BEQ16778 126 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 MPV17L2Q567V2 206 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 ZC2HC1BQ5TFG8 222 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 Q8N976 141 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 HIST1H2BHQ93079 126 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 HIST1H2BNQ99877 126 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 HIST1H2BMQ99879 126 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 OPRPNQ99935 248 aaPredicted RBP4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 CHCHD5Q9BSY4 110 aa4.41□□□□□ -1.7
DEPDC4-201ENST00000299185 VPS13DQ5THJ4 4388 aa4.4□□□□□ -1.7
DEPDC4-201ENST00000299185 IGLV4-60A0A075B6I1 120 aa4.4□□□□□ -1.71
DEPDC4-201ENST00000299185 TRBV6-8A0A0A6YYG3 113 aa4.4□□□□□ -1.71
DEPDC4-201ENST00000299185 IGHV1-24A0A0C4DH33 117 aa4.4□□□□□ -1.71
DEPDC4-201ENST00000299185 I3L3M4 83 aa4.4□□□□□ -1.71
DEPDC4-201ENST00000299185 NUPR1O60356 82 aa4.4□□□□□ -1.71
DEPDC4-201ENST00000299185 PPBPP02775 128 aa4.4□□□□□ -1.71
DEPDC4-201ENST00000299185 FCER1GP30273 86 aa4.4□□□□□ -1.71
DEPDC4-201ENST00000299185 LELP1Q5T871 98 aa4.4□□□□□ -1.71
DEPDC4-201ENST00000299185 Q6ZUT4 128 aa4.4□□□□□ -1.71
DEPDC4-201ENST00000299185 DAZ4Q86SG3 579 aaKnown RBP4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 218.9 ms