RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 GTSCR1Q86UQ5 136 aa10.35□□□□□ -0.75
C9orf3-202ENST00000297979 TMEM158Q8WZ71 300 aa10.34□□□□□ -0.75
C9orf3-202ENST00000297979 ST20Q9HBF5 79 aa10.34□□□□□ -0.75
C9orf3-202ENST00000297979 CYSRT1A8MQ03 144 aa10.34□□□□□ -0.75
C9orf3-202ENST00000297979 J3QR89 54 aa10.34□□□□□ -0.75
C9orf3-202ENST00000297979 ATOH7Q8N100 152 aa10.34□□□□□ -0.75
C9orf3-202ENST00000297979 NIPBLQ6KC79 2804 aaeCLIP10.34□□□□□ -0.75
C9orf3-202ENST00000297979 A8MWV9 139 aa10.34□□□□□ -0.75
C9orf3-202ENST00000297979 K7EMI3 77 aa10.34□□□□□ -0.75
C9orf3-202ENST00000297979 IFI27L1Q96BM0 104 aa10.34□□□□□ -0.75
C9orf3-202ENST00000297979 M0QY20 66 aa10.33□□□□□ -0.76
C9orf3-202ENST00000297979 KRTAP24-1Q3LI83 254 aa10.33□□□□□ -0.76
C9orf3-202ENST00000297979 ORMDL2Q53FV1 153 aa10.33□□□□□ -0.76
C9orf3-202ENST00000297979 LINC01545Q5VT33 79 aa10.33□□□□□ -0.76
C9orf3-202ENST00000297979 TMEM126AQ9H061 195 aa10.32□□□□□ -0.76
C9orf3-202ENST00000297979 CYSLTR1Q9Y271 337 aa10.32□□□□□ -0.76
C9orf3-202ENST00000297979 BAHCC1Q9P281 2608 aa10.32□□□□□ -0.76
C9orf3-202ENST00000297979 TRBV6-5A0A0K0K1A5 114 aa10.32□□□□□ -0.76
C9orf3-202ENST00000297979 C4orf26Q17RF5 130 aa10.32□□□□□ -0.76
C9orf3-202ENST00000297979 IL17DQ8TAD2 202 aa10.32□□□□□ -0.76
C9orf3-202ENST00000297979 TMEM263Q8WUH6 116 aaKnown RBP10.32□□□□□ -0.76
C9orf3-202ENST00000297979 NUDT3O95989 172 aa10.31□□□□□ -0.76
C9orf3-202ENST00000297979 C18orf15Q96N68 181 aa10.31□□□□□ -0.76
C9orf3-202ENST00000297979 TRAV9-2A0A087WT02 112 aa10.31□□□□□ -0.76
C9orf3-202ENST00000297979 LINC00694P0DN24 101 aa10.3□□□□□ -0.76
C9orf3-202ENST00000297979 POLR2KP53803 58 aaKnown RBP10.3□□□□□ -0.76
C9orf3-202ENST00000297979 CSNK1G2-AS1Q8NCQ2 148 aa10.3□□□□□ -0.76
C9orf3-202ENST00000297979 TMEM101Q96IK0 257 aa10.3□□□□□ -0.76
C9orf3-202ENST00000297979 H7C1H1 209 aa10.3□□□□□ -0.76
C9orf3-202ENST00000297979 CFAP126Q5VTH2 177 aa10.3□□□□□ -0.76
C9orf3-202ENST00000297979 WFDC9Q8NEX5 89 aa10.3□□□□□ -0.76
C9orf3-202ENST00000297979 EDA2RQ9HAV5 297 aa10.3□□□□□ -0.76
C9orf3-202ENST00000297979 JMJD1CQ15652 2540 aa10.3□□□□□ -0.76
C9orf3-202ENST00000297979 IGHV3-73A0A0B4J1V6 119 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 SDHAF1A6NFY7 115 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 K7EP34 96 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 RHODO00212 210 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 VCYO14598 125 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 TM2D2Q9BX73 214 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 PKIGQ9Y2B9 76 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 TENM1Q9UKZ4 2725 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 ATP5LO75964 103 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 LGALS9BQ3B8N2 356 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 MPV17L2Q567V2 206 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 LGALS9CQ6DKI2 356 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 PMCHL2Q9BQD1 86 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 MT-ATP8P03928 68 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 EMP1P54849 157 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 C16orf74Q96GX8 76 aa10.29□□□□□ -0.76
C9orf3-202ENST00000297979 TEP1Q99973 2627 aaKnown RBP10.28□□□□□ -0.76
C9orf3-202ENST00000297979 TRBV27A0A0K0K1C4 114 aa10.28□□□□□ -0.76
C9orf3-202ENST00000297979 IGLL1P15814 213 aa10.28□□□□□ -0.76
C9orf3-202ENST00000297979 KIR2DL4Q99706 377 aa10.28□□□□□ -0.76
C9orf3-202ENST00000297979 ATRQ13535 2644 aa10.27□□□□□ -0.76
C9orf3-202ENST00000297979 TRGV1A0A0A0MS02 117 aa10.27□□□□□ -0.77
C9orf3-202ENST00000297979 TOMM6Q96B49 74 aa10.27□□□□□ -0.77
C9orf3-202ENST00000297979 SPANXA1Q9NS26 97 aa10.27□□□□□ -0.77
C9orf3-202ENST00000297979 NACAE9PAV3 2078 aa10.27□□□□□ -0.77
C9orf3-202ENST00000297979 RRN3P1Q2M238 152 aa10.26□□□□□ -0.77
C9orf3-202ENST00000297979 BVES-AS1Q5T3Y7 98 aa10.26□□□□□ -0.77
C9orf3-202ENST00000297979 RETNQ9HD89 108 aa10.26□□□□□ -0.77
C9orf3-202ENST00000297979 C9JAW5 83 aa10.26□□□□□ -0.77
C9orf3-202ENST00000297979 C2orf66Q6UXQ4 117 aa10.26□□□□□ -0.77
C9orf3-202ENST00000297979 hDV102S1A0JD36 115 aa10.25□□□□□ -0.77
C9orf3-202ENST00000297979 PRSS1P07477 247 aa10.25□□□□□ -0.77
C9orf3-202ENST00000297979 DAZ2Q13117 558 aaKnown RBP10.25□□□□□ -0.77
C9orf3-202ENST00000297979 TMEM97Q5BJF2 176 aa10.25□□□□□ -0.77
C9orf3-202ENST00000297979 ZFP2Q6ZN57 461 aa10.25□□□□□ -0.77
C9orf3-202ENST00000297979 VWFP04275 2813 aa10.25□□□□□ -0.77
C9orf3-202ENST00000297979 PLAC8L1A1L4L8 177 aa10.25□□□□□ -0.77
C9orf3-202ENST00000297979 MEIG1Q5JSS6 88 aa10.25□□□□□ -0.77
C9orf3-202ENST00000297979 ZFAND6Q6FIF0 208 aa10.25□□□□□ -0.77
C9orf3-202ENST00000297979 PRO0628Q9UI54 55 aa10.25□□□□□ -0.77
C9orf3-202ENST00000297979 J3KT08 172 aa10.25□□□□□ -0.77
C9orf3-202ENST00000297979 Q6ZTI0 123 aa10.25□□□□□ -0.77
C9orf3-202ENST00000297979 SCGB3A1Q96QR1 104 aa10.25□□□□□ -0.77
C9orf3-202ENST00000297979 NOP10Q9NPE3 64 aaKnown RBP10.25□□□□□ -0.77
C9orf3-202ENST00000297979 IGHV3-53P01767 116 aa10.24□□□□□ -0.77
C9orf3-202ENST00000297979 P0DMU3 169 aa10.24□□□□□ -0.77
C9orf3-202ENST00000297979 FAM231AP0DMU4 169 aa10.24□□□□□ -0.77
C9orf3-202ENST00000297979 FAM231CP0DMU5 169 aa10.24□□□□□ -0.77
C9orf3-202ENST00000297979 Q6ZSN1 163 aa10.24□□□□□ -0.77
C9orf3-202ENST00000297979 C3orf56Q8N813 242 aa10.24□□□□□ -0.77
C9orf3-202ENST00000297979 OR5A1Q8NGJ0 315 aa10.24□□□□□ -0.77
C9orf3-202ENST00000297979 PRIMA1Q86XR5 153 aa10.24□□□□□ -0.77
C9orf3-202ENST00000297979 LINC01549A6NIU2 74 aa10.23□□□□□ -0.77
C9orf3-202ENST00000297979 I3L3M4 83 aa10.23□□□□□ -0.77
C9orf3-202ENST00000297979 DEFB104AQ8WTQ1 72 aa10.23□□□□□ -0.77
C9orf3-202ENST00000297979 RHOHQ15669 191 aa10.23□□□□□ -0.77
C9orf3-202ENST00000297979 DKK2Q9UBU2 259 aa10.23□□□□□ -0.77
C9orf3-202ENST00000297979 TRAV4A0A0B4J268 109 aa10.22□□□□□ -0.77
C9orf3-202ENST00000297979 MALP21145 153 aa10.22□□□□□ -0.77
C9orf3-202ENST00000297979 TP53TG1Q9Y2A0 90 aa10.22□□□□□ -0.77
C9orf3-202ENST00000297979 TSHBP01222 138 aa10.22□□□□□ -0.77
C9orf3-202ENST00000297979 OVOL2Q9BRP0 275 aa10.22□□□□□ -0.77
C9orf3-202ENST00000297979 NOTCH3Q9UM47 2321 aa10.22□□□□□ -0.77
C9orf3-202ENST00000297979 HRCT1Q6UXD1 115 aa10.21□□□□□ -0.77
C9orf3-202ENST00000297979 Q6ZUT4 128 aa10.21□□□□□ -0.77
C9orf3-202ENST00000297979 NEXN-AS1Q8NBZ9 246 aa10.21□□□□□ -0.77
C9orf3-202ENST00000297979 LINC00336Q6ZUF6 198 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms