RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 BAALCQ8WXS3 180 aa11.7□□□□□ -0.54
USP4-201ENST00000265560 CELA1Q9UNI1 258 aa11.7□□□□□ -0.54
USP4-201ENST00000265560 K7EQD1 137 aa11.69□□□□□ -0.54
USP4-201ENST00000265560 ERASQ7Z444 233 aa11.69□□□□□ -0.54
USP4-201ENST00000265560 KIR2DL5BQ8NHK3 375 aa11.69□□□□□ -0.54
USP4-201ENST00000265560 IGLC3P0DOY3 106 aa11.69□□□□□ -0.54
USP4-201ENST00000265560 TTTY13Q9BZ97 58 aa11.69□□□□□ -0.54
USP4-201ENST00000265560 PRSS29PA6NIE9 313 aa11.69□□□□□ -0.54
USP4-201ENST00000265560 HSBP1L1C9JCN9 74 aa11.69□□□□□ -0.54
USP4-201ENST00000265560 RPL32P62910 135 aaKnown RBP11.69□□□□□ -0.54
USP4-201ENST00000265560 A0A096LPF7 62 aa11.68□□□□□ -0.54
USP4-201ENST00000265560 IGIPA6NJ69 53 aa11.68□□□□□ -0.54
USP4-201ENST00000265560 TRBV7-3A0A075B6L6 115 aa11.68□□□□□ -0.54
USP4-201ENST00000265560 FHL2Q14192 279 aa11.68□□□□□ -0.54
USP4-201ENST00000265560 C20orf203Q8NBC4 194 aa11.68□□□□□ -0.54
USP4-201ENST00000265560 DNAH3Q8TD57 4116 aa11.67□□□□□ -0.54
USP4-201ENST00000265560 HTN3P15516 51 aa11.67□□□□□ -0.54
USP4-201ENST00000265560 DEFA6Q01524 100 aa11.67□□□□□ -0.54
USP4-201ENST00000265560 K7EMI3 77 aa11.66□□□□□ -0.54
USP4-201ENST00000265560 MIEN1Q9BRT3 115 aa11.66□□□□□ -0.54
USP4-201ENST00000265560 EGFEM1PQ0D2K5 195 aa11.66□□□□□ -0.54
USP4-201ENST00000265560 A0A087WX48 190 aa11.66□□□□□ -0.54
USP4-201ENST00000265560 A0A0J9YY99 117 aa11.66□□□□□ -0.54
USP4-201ENST00000265560 IGKCP01834 107 aa11.66□□□□□ -0.54
USP4-201ENST00000265560 NMUP48645 174 aa11.66□□□□□ -0.54
USP4-201ENST00000265560 RPL36AP83881 106 aaKnown RBP11.66□□□□□ -0.54
USP4-201ENST00000265560 RPL36ALQ969Q0 106 aaKnown RBP11.66□□□□□ -0.54
USP4-201ENST00000265560 COTL1Q14019 142 aa11.65□□□□□ -0.54
USP4-201ENST00000265560 HHLA3Q9XRX5 114 aa11.65□□□□□ -0.54
USP4-201ENST00000265560 CHTOPQ9Y3Y2 248 aaKnown RBP11.65□□□□□ -0.54
USP4-201ENST00000265560 IGKV2D-26A0A0A0MRZ7 120 aa11.65□□□□□ -0.54
USP4-201ENST00000265560 CTAG1AP78358 180 aa11.65□□□□□ -0.54
USP4-201ENST00000265560 Q8NAQ8 132 aa11.65□□□□□ -0.54
USP4-201ENST00000265560 CHCHD7Q9BUK0 85 aa11.65□□□□□ -0.54
USP4-201ENST00000265560 EDA2RQ9HAV5 297 aa11.65□□□□□ -0.54
USP4-201ENST00000265560 NTM-AS1Q6ZSK4 140 aa11.64□□□□□ -0.55
USP4-201ENST00000265560 MRAPQ8TCY5 172 aa11.64□□□□□ -0.55
USP4-201ENST00000265560 RNF183Q96D59 192 aa11.64□□□□□ -0.55
USP4-201ENST00000265560 NDUFAF3Q9BU61 184 aa11.64□□□□□ -0.55
USP4-201ENST00000265560 DPM2O94777 84 aa11.64□□□□□ -0.55
USP4-201ENST00000265560 BATFQ16520 125 aa11.64□□□□□ -0.55
USP4-201ENST00000265560 PCP2Q8IVA1 136 aa11.64□□□□□ -0.55
USP4-201ENST00000265560 ZMAT4Q9H898 229 aa11.64□□□□□ -0.55
USP4-201ENST00000265560 LINC00694P0DN24 101 aa11.63□□□□□ -0.55
USP4-201ENST00000265560 RHOHQ15669 191 aa11.63□□□□□ -0.55
USP4-201ENST00000265560 STAB2Q8WWQ8 2551 aa11.63□□□□□ -0.55
USP4-201ENST00000265560 SMIM9A6NGZ8 99 aa11.63□□□□□ -0.55
USP4-201ENST00000265560 COL7A1Q02388 2944 aa11.62□□□□□ -0.55
USP4-201ENST00000265560 UQCR10Q9UDW1 63 aa11.62□□□□□ -0.55
USP4-201ENST00000265560 DAD1P61803 113 aa11.62□□□□□ -0.55
USP4-201ENST00000265560 DEFB121Q5J5C9 76 aa11.62□□□□□ -0.55
USP4-201ENST00000265560 DNAJC30Q96LL9 226 aa11.62□□□□□ -0.55
USP4-201ENST00000265560 CST9LQ9H4G1 147 aa11.62□□□□□ -0.55
USP4-201ENST00000265560 F8VRH5 84 aa11.61□□□□□ -0.55
USP4-201ENST00000265560 UBE2D3P61077 147 aa11.61□□□□□ -0.55
USP4-201ENST00000265560 UBE2D2P62837 147 aa11.61□□□□□ -0.55
USP4-201ENST00000265560 FAM104AQ969W3 186 aa11.61□□□□□ -0.55
USP4-201ENST00000265560 EREGO14944 169 aa11.61□□□□□ -0.55
USP4-201ENST00000265560 IGLV4-3A0A075B6K6 122 aa11.6□□□□□ -0.55
USP4-201ENST00000265560 GYPEP15421 78 aa11.6□□□□□ -0.55
USP4-201ENST00000265560 HNRNPA3P51991 378 aaKnown RBP11.6□□□□□ -0.55
USP4-201ENST00000265560 SAMD5Q5TGI4 173 aa11.6□□□□□ -0.55
USP4-201ENST00000265560 TRBV6-4A0A1B0GX49 114 aa11.6□□□□□ -0.55
USP4-201ENST00000265560 C11orf86A6NJI1 115 aa11.6□□□□□ -0.55
USP4-201ENST00000265560 PMVKQ15126 192 aa11.6□□□□□ -0.55
USP4-201ENST00000265560 TRBV10-1A0A0K0K1A3 114 aa11.59□□□□□ -0.55
USP4-201ENST00000265560 TIMM17AQ99595 171 aa11.59□□□□□ -0.55
USP4-201ENST00000265560 VCX2Q9H322 139 aa11.59□□□□□ -0.55
USP4-201ENST00000265560 IGLV4-69A0A075B6H9 119 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 TRAV8-6A0A0B4J262 113 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 F5H768 121 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 MIFP14174 115 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 G0S2P27469 103 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 Q6ZUT4 128 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 LINC00612Q8N6U2 182 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 TRAV12-1A0A0B4J245 112 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 SLC25A34Q6PIV7 304 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 SBSPONQ8IVN8 264 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 PRADC1Q9BSG0 188 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 SNHG12Q9BXW3 62 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 UBE2D4Q9Y2X8 147 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 IGHV3-64A0A075B6Q5 118 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 A0A0J9YXV3 536 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 TMEM141Q96I45 108 aa11.58□□□□□ -0.56
USP4-201ENST00000265560 LYRM9A8MSI8 78 aa11.57□□□□□ -0.56
USP4-201ENST00000265560 CRYBA4P53673 196 aa11.57□□□□□ -0.56
USP4-201ENST00000265560 TMEM170BQ5T4T1 132 aa11.57□□□□□ -0.56
USP4-201ENST00000265560 TRAV26-1A0A087WT03 109 aa11.56□□□□□ -0.56
USP4-201ENST00000265560 DGAT2L7PQ6IED9 249 aa11.56□□□□□ -0.56
USP4-201ENST00000265560 PAX4O43316 350 aa11.56□□□□□ -0.56
USP4-201ENST00000265560 HINT1P49773 126 aaPredicted RBP11.56□□□□□ -0.56
USP4-201ENST00000265560 DAZ4Q86SG3 579 aaKnown RBP11.56□□□□□ -0.56
USP4-201ENST00000265560 DAZ3Q9NR90 486 aaKnown RBP11.56□□□□□ -0.56
USP4-201ENST00000265560 SPART-AS1P0CW21 52 aa11.55□□□□□ -0.56
USP4-201ENST00000265560 GAGE6Q13070 117 aa11.55□□□□□ -0.56
USP4-201ENST00000265560 IGKV3OR2-268A0A0C4DH90 116 aa11.55□□□□□ -0.56
USP4-201ENST00000265560 COX8AP10176 69 aa11.55□□□□□ -0.56
USP4-201ENST00000265560 PLNP26678 52 aa11.55□□□□□ -0.56
USP4-201ENST00000265560 DNHD1Q96M86 4753 aa11.55□□□□□ -0.56
USP4-201ENST00000265560 VSIG2Q96IQ7 327 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms