RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 Q6ZSN1 163 aa9.25□□□□□ -0.93
HIF3A-201ENST00000244302 LINC00467Q9BRT7 94 aa9.25□□□□□ -0.93
HIF3A-201ENST00000244302 TM2D2Q9BX73 214 aa9.25□□□□□ -0.93
HIF3A-201ENST00000244302 A0A087WX48 190 aa9.25□□□□□ -0.93
HIF3A-201ENST00000244302 IGKV2D-26A0A0A0MRZ7 120 aa9.25□□□□□ -0.93
HIF3A-201ENST00000244302 TRGV1A0A0A0MS02 117 aa9.25□□□□□ -0.93
HIF3A-201ENST00000244302 TRAV12-1A0A0B4J245 112 aa9.25□□□□□ -0.93
HIF3A-201ENST00000244302 K7EIL1 84 aa9.25□□□□□ -0.93
HIF3A-201ENST00000244302 ZNF415Q09FC8 603 aa9.25□□□□□ -0.93
HIF3A-201ENST00000244302 RRN3P1Q2M238 152 aa9.25□□□□□ -0.93
HIF3A-201ENST00000244302 ZC2HC1BQ5TFG8 222 aa9.25□□□□□ -0.93
HIF3A-201ENST00000244302 IL17DQ8TAD2 202 aa9.25□□□□□ -0.93
HIF3A-201ENST00000244302 RPL39LQ96EH5 51 aaKnown RBP9.25□□□□□ -0.93
HIF3A-201ENST00000244302 SPCS1Q9Y6A9 102 aa9.25□□□□□ -0.93
HIF3A-201ENST00000244302 COL7A1Q02388 2944 aa9.25□□□□□ -0.93
HIF3A-201ENST00000244302 TRBV25-1A0A075B6N4 114 aa9.24□□□□□ -0.93
HIF3A-201ENST00000244302 M0R2P5 195 aa9.24□□□□□ -0.93
HIF3A-201ENST00000244302 IGHV3-53P01767 116 aa9.24□□□□□ -0.93
HIF3A-201ENST00000244302 ORMDL2Q53FV1 153 aa9.24□□□□□ -0.93
HIF3A-201ENST00000244302 NEGR1Q7Z3B1 354 aa9.24□□□□□ -0.93
HIF3A-201ENST00000244302 OR11H2Q8NH07 326 aa9.24□□□□□ -0.93
HIF3A-201ENST00000244302 TMEM263Q8WUH6 116 aaKnown RBP9.24□□□□□ -0.93
HIF3A-201ENST00000244302 P0DMU3 169 aa9.23□□□□□ -0.93
HIF3A-201ENST00000244302 FAM231AP0DMU4 169 aa9.23□□□□□ -0.93
HIF3A-201ENST00000244302 FAM231CP0DMU5 169 aa9.23□□□□□ -0.93
HIF3A-201ENST00000244302 GCSHP23434 173 aa9.23□□□□□ -0.93
HIF3A-201ENST00000244302 RIPPLY3P57055 190 aa9.23□□□□□ -0.93
HIF3A-201ENST00000244302 TCTAP57738 103 aa9.23□□□□□ -0.93
HIF3A-201ENST00000244302 C20orf78Q9BR46 151 aa9.23□□□□□ -0.93
HIF3A-201ENST00000244302 SMIM2Q9BVW6 85 aa9.23□□□□□ -0.93
HIF3A-201ENST00000244302 PRKDCP78527 4128 aaKnown RBP9.23□□□□□ -0.93
HIF3A-201ENST00000244302 APOC4P55056 127 aa9.23□□□□□ -0.93
HIF3A-201ENST00000244302 CEND1Q8N111 149 aa9.23□□□□□ -0.93
HIF3A-201ENST00000244302 KIR2DL5BQ8NHK3 375 aa9.23□□□□□ -0.93
HIF3A-201ENST00000244302 MRAPQ8TCY5 172 aa9.23□□□□□ -0.93
HIF3A-201ENST00000244302 DPH3P1Q9H4G8 78 aa9.23□□□□□ -0.93
HIF3A-201ENST00000244302 F5H697 171 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.22□□□□□ -0.93
HIF3A-201ENST00000244302 GAGE7O76087 117 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 GAGE12FP0CL80 117 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 GAGE12GP0CL81 117 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 GAGE12IP0CL82 117 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 FXYD2P54710 66 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 DEFB121Q5J5C9 76 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 CFAP126Q5VTH2 177 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 RAB37Q96AX2 223 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 MRPL35Q9NZE8 188 aaKnown RBP9.22□□□□□ -0.93
HIF3A-201ENST00000244302 H7C1H1 209 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 PPP1R17O96001 155 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 SUMO4Q6EEV6 95 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 SBSPONQ8IVN8 264 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 RASL10AQ92737 203 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 ZNF479Q96JC4 524 aa9.22□□□□□ -0.93
HIF3A-201ENST00000244302 F8VRH5 84 aa9.21□□□□□ -0.94
HIF3A-201ENST00000244302 SYT8Q8NBV8 401 aa9.21□□□□□ -0.94
HIF3A-201ENST00000244302 MEGF8Q7Z7M0 2845 aa9.21□□□□□ -0.94
HIF3A-201ENST00000244302 IGHV4-28A0A0C4DH34 117 aa9.2□□□□□ -0.94
HIF3A-201ENST00000244302 DEFB130BP0DP73 79 aa9.2□□□□□ -0.94
HIF3A-201ENST00000244302 DEFB130AP0DP74 79 aa9.2□□□□□ -0.94
HIF3A-201ENST00000244302 PHLDA1Q8WV24 401 aaPredicted RBP9.2□□□□□ -0.94
HIF3A-201ENST00000244302 TOMM6Q96B49 74 aa9.2□□□□□ -0.94
HIF3A-201ENST00000244302 RNF183Q96D59 192 aa9.2□□□□□ -0.94
HIF3A-201ENST00000244302 C16orf74Q96GX8 76 aa9.2□□□□□ -0.94
HIF3A-201ENST00000244302 OVOL2Q9BRP0 275 aa9.2□□□□□ -0.94
HIF3A-201ENST00000244302 LINC01549A6NIU2 74 aa9.2□□□□□ -0.94
HIF3A-201ENST00000244302 SUMO2P61956 95 aaKnown RBP9.2□□□□□ -0.94
HIF3A-201ENST00000244302 ZNF56Q15929 161 aa9.2□□□□□ -0.94
HIF3A-201ENST00000244302 SPXQ9BT56 116 aa9.19□□□□□ -0.94
HIF3A-201ENST00000244302 CELA1Q9UNI1 258 aa9.19□□□□□ -0.94
HIF3A-201ENST00000244302 DAZ2Q13117 558 aaKnown RBP9.19□□□□□ -0.94
HIF3A-201ENST00000244302 Q8NAQ8 132 aa9.19□□□□□ -0.94
HIF3A-201ENST00000244302 NAA38Q9BRA0 125 aaKnown RBP9.19□□□□□ -0.94
HIF3A-201ENST00000244302 A8MZ25 164 aa9.18□□□□□ -0.94
HIF3A-201ENST00000244302 KPRPQ5T749 579 aaPredicted RBP9.18□□□□□ -0.94
HIF3A-201ENST00000244302 E9PLD3 99 aa9.17□□□□□ -0.94
HIF3A-201ENST00000244302 M0QY20 66 aa9.17□□□□□ -0.94
HIF3A-201ENST00000244302 RPL32P62910 135 aaKnown RBP9.17□□□□□ -0.94
HIF3A-201ENST00000244302 FAM222AQ5U5X8 452 aa9.17□□□□□ -0.94
HIF3A-201ENST00000244302 SCGB3A1Q96QR1 104 aa9.17□□□□□ -0.94
HIF3A-201ENST00000244302 TTTY13Q9BZ97 58 aa9.17□□□□□ -0.94
HIF3A-201ENST00000244302 NHP2Q9NX24 153 aaKnown RBP9.17□□□□□ -0.94
HIF3A-201ENST00000244302 CHTOPQ9Y3Y2 248 aaKnown RBP9.17□□□□□ -0.94
HIF3A-201ENST00000244302 RS1O15537 224 aa9.17□□□□□ -0.94
HIF3A-201ENST00000244302 NEXN-AS1Q8NBZ9 246 aa9.17□□□□□ -0.94
HIF3A-201ENST00000244302 TRGV2A0A075B6R0 118 aa9.16□□□□□ -0.94
HIF3A-201ENST00000244302 MYMXA0A1B0GTQ4 84 aa9.16□□□□□ -0.94
HIF3A-201ENST00000244302 A0A1B0GWB2 263 aa9.16□□□□□ -0.94
HIF3A-201ENST00000244302 MAPKAPK5-AS1Q8N8E1 139 aa9.16□□□□□ -0.94
HIF3A-201ENST00000244302 HIST1H4GQ99525 98 aa9.16□□□□□ -0.94
HIF3A-201ENST00000244302 TRBV7-3A0A075B6L6 115 aa9.15□□□□□ -0.94
HIF3A-201ENST00000244302 A8MWV9 139 aa9.15□□□□□ -0.94
HIF3A-201ENST00000244302 IGLL5B9A064 214 aa9.15□□□□□ -0.94
HIF3A-201ENST00000244302 LOC100131303A0A0U1RQF7 123 aa9.14□□□□□ -0.95
HIF3A-201ENST00000244302 F8W1H4 67 aa9.14□□□□□ -0.95
HIF3A-201ENST00000244302 K7ERJ3 54 aa9.14□□□□□ -0.95
HIF3A-201ENST00000244302 C12orf74Q32Q52 190 aa9.14□□□□□ -0.95
HIF3A-201ENST00000244302 PTH2Q96A98 100 aa9.14□□□□□ -0.95
HIF3A-201ENST00000244302 STAB2Q8WWQ8 2551 aa9.14□□□□□ -0.95
HIF3A-201ENST00000244302 SMIM9A6NGZ8 99 aa9.14□□□□□ -0.95
HIF3A-201ENST00000244302 PAPPA-AS1Q5QFB9 102 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms