RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 RPL36AP83881 106 aaKnown RBP8.58□□□□□ -1.04
LINC00339-213ENST00000642137 ZFAND6Q6FIF0 208 aa8.58□□□□□ -1.04
LINC00339-213ENST00000642137 SH2D6Q7Z4S9 175 aa8.58□□□□□ -1.04
LINC00339-213ENST00000642137 ZNRF2Q8NHG8 242 aa8.58□□□□□ -1.04
LINC00339-213ENST00000642137 RPL36ALQ969Q0 106 aaKnown RBP8.58□□□□□ -1.04
LINC00339-213ENST00000642137 Q9UF83 564 aa8.58□□□□□ -1.04
LINC00339-213ENST00000642137 APLNQ9ULZ1 77 aa8.58□□□□□ -1.04
LINC00339-213ENST00000642137 TRAPPC1Q9Y5R8 145 aa8.58□□□□□ -1.04
LINC00339-213ENST00000642137 TNFRSF18Q9Y5U5 241 aa8.58□□□□□ -1.04
LINC00339-213ENST00000642137 ICOSQ9Y6W8 199 aa8.58□□□□□ -1.04
LINC00339-213ENST00000642137 A0A096LPF7 62 aa8.57□□□□□ -1.04
LINC00339-213ENST00000642137 LOC100131303A0A0U1RQF7 123 aa8.57□□□□□ -1.04
LINC00339-213ENST00000642137 GAGE12JA6NER3 117 aa8.57□□□□□ -1.04
LINC00339-213ENST00000642137 NUDT3O95989 172 aa8.57□□□□□ -1.04
LINC00339-213ENST00000642137 GAGE1Q13065 139 aa8.57□□□□□ -1.04
LINC00339-213ENST00000642137 GAGE4Q13068 117 aa8.57□□□□□ -1.04
LINC00339-213ENST00000642137 GAGE5Q13069 117 aa8.57□□□□□ -1.04
LINC00339-213ENST00000642137 GAGE13Q4V321 117 aa8.57□□□□□ -1.04
LINC00339-213ENST00000642137 ORMDL3Q8N138 153 aa8.57□□□□□ -1.04
LINC00339-213ENST00000642137 MRPL18Q9H0U6 180 aaKnown RBP8.57□□□□□ -1.04
LINC00339-213ENST00000642137 TRBV6-5A0A0K0K1A5 114 aa8.56□□□□□ -1.04
LINC00339-213ENST00000642137 D6R8Y8 96 aa8.56□□□□□ -1.04
LINC00339-213ENST00000642137 SMKR1H3BMG3 65 aa8.56□□□□□ -1.04
LINC00339-213ENST00000642137 PHOX2AO14813 284 aa8.56□□□□□ -1.04
LINC00339-213ENST00000642137 GAS8-AS1O95177 125 aa8.56□□□□□ -1.04
LINC00339-213ENST00000642137 LINC00694P0DN24 101 aa8.56□□□□□ -1.04
LINC00339-213ENST00000642137 SRIP30626 198 aa8.56□□□□□ -1.04
LINC00339-213ENST00000642137 FABP9Q0Z7S8 132 aa8.56□□□□□ -1.04
LINC00339-213ENST00000642137 OR10J3Q5JRS4 329 aa8.56□□□□□ -1.04
LINC00339-213ENST00000642137 CASC10Q5T4H9 136 aa8.56□□□□□ -1.04
LINC00339-213ENST00000642137 NEGR1Q7Z3B1 354 aa8.56□□□□□ -1.04
LINC00339-213ENST00000642137 RPL39LQ96EH5 51 aaKnown RBP8.56□□□□□ -1.04
LINC00339-213ENST00000642137 RAB5AP20339 215 aa8.55□□□□□ -1.04
LINC00339-213ENST00000642137 RPS10P46783 165 aaKnown RBP8.55□□□□□ -1.04
LINC00339-213ENST00000642137 UBE2D3P61077 147 aa8.55□□□□□ -1.04
LINC00339-213ENST00000642137 UBE2D2P62837 147 aa8.55□□□□□ -1.04
LINC00339-213ENST00000642137 NRACQ8N912 160 aa8.55□□□□□ -1.04
LINC00339-213ENST00000642137 ATP6V0E2Q8NHE4 81 aa8.55□□□□□ -1.04
LINC00339-213ENST00000642137 PRELID3AQ96N28 172 aa8.55□□□□□ -1.04
LINC00339-213ENST00000642137 ST20Q9HBF5 79 aa8.55□□□□□ -1.04
LINC00339-213ENST00000642137 LAMTOR2Q9Y2Q5 125 aa8.55□□□□□ -1.04
LINC00339-213ENST00000642137 TGP01266 2768 aa8.55□□□□□ -1.04
LINC00339-213ENST00000642137 PRSS47A8MTI9 375 aa8.54□□□□□ -1.04
LINC00339-213ENST00000642137 TNFRSF6BO95407 300 aa8.54□□□□□ -1.04
LINC00339-213ENST00000642137 NCR2O95944 276 aa8.54□□□□□ -1.04
LINC00339-213ENST00000642137 POLR2KP53803 58 aaKnown RBP8.54□□□□□ -1.04
LINC00339-213ENST00000642137 KIAA1644Q3SXP7 199 aa8.54□□□□□ -1.04
LINC00339-213ENST00000642137 DAZ4Q86SG3 579 aaKnown RBP8.54□□□□□ -1.04
LINC00339-213ENST00000642137 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.54□□□□□ -1.04
LINC00339-213ENST00000642137 C20orf78Q9BR46 151 aa8.54□□□□□ -1.04
LINC00339-213ENST00000642137 DAZ3Q9NR90 486 aaKnown RBP8.54□□□□□ -1.04
LINC00339-213ENST00000642137 DNAH7Q8WXX0 4024 aa8.53□□□□□ -1.04
LINC00339-213ENST00000642137 RPL32P62910 135 aaKnown RBP8.53□□□□□ -1.04
LINC00339-213ENST00000642137 LYPD5Q6UWN5 251 aa8.53□□□□□ -1.04
LINC00339-213ENST00000642137 ALKBH7Q9BT30 221 aaPredicted RBP8.53□□□□□ -1.04
LINC00339-213ENST00000642137 GTSF1LQ9H1H1 148 aa8.53□□□□□ -1.04
LINC00339-213ENST00000642137 SDHAF1A6NFY7 115 aa8.52□□□□□ -1.05
LINC00339-213ENST00000642137 VCYO14598 125 aa8.52□□□□□ -1.05
LINC00339-213ENST00000642137 NPYP01303 97 aa8.52□□□□□ -1.05
LINC00339-213ENST00000642137 TIRAPP58753 221 aa8.52□□□□□ -1.05
LINC00339-213ENST00000642137 SUMO2P61956 95 aaKnown RBP8.52□□□□□ -1.05
LINC00339-213ENST00000642137 TMEM97Q5BJF2 176 aa8.52□□□□□ -1.05
LINC00339-213ENST00000642137 TRBV27A0A0K0K1C4 114 aa8.51□□□□□ -1.05
LINC00339-213ENST00000642137 I3L3M4 83 aa8.51□□□□□ -1.05
LINC00339-213ENST00000642137 TRGC2P03986 189 aa8.51□□□□□ -1.05
LINC00339-213ENST00000642137 ESRGQ1W209 222 aa8.51□□□□□ -1.05
LINC00339-213ENST00000642137 TMEM70Q9BUB7 260 aa8.51□□□□□ -1.05
LINC00339-213ENST00000642137 DYNC2H1Q8NCM8 4307 aaKnown RBP8.5□□□□□ -1.05
LINC00339-213ENST00000642137 PMCHP20382 165 aa8.5□□□□□ -1.05
LINC00339-213ENST00000642137 CCL18P55774 89 aa8.5□□□□□ -1.05
LINC00339-213ENST00000642137 MAP1LC3AQ9H492 121 aa8.5□□□□□ -1.05
LINC00339-213ENST00000642137 IGHV3-38A0A0C4DH36 116 aa8.49□□□□□ -1.05
LINC00339-213ENST00000642137 SMIM2Q9BVW6 85 aa8.49□□□□□ -1.05
LINC00339-213ENST00000642137 TCAPO15273 167 aa8.48□□□□□ -1.05
LINC00339-213ENST00000642137 COTL1Q14019 142 aa8.48□□□□□ -1.05
LINC00339-213ENST00000642137 LELP1Q5T871 98 aa8.48□□□□□ -1.05
LINC00339-213ENST00000642137 NTM-AS1Q6ZSK4 140 aa8.48□□□□□ -1.05
LINC00339-213ENST00000642137 KIR2DL4Q99706 377 aa8.48□□□□□ -1.05
LINC00339-213ENST00000642137 LINC00588Q9Y4M8 146 aa8.48□□□□□ -1.05
LINC00339-213ENST00000642137 CSMD3Q7Z407 3707 aa8.47□□□□□ -1.05
LINC00339-213ENST00000642137 IGLV2-18A0A075B6J9 118 aa8.47□□□□□ -1.05
LINC00339-213ENST00000642137 TRBV6-8A0A0A6YYG3 113 aa8.47□□□□□ -1.05
LINC00339-213ENST00000642137 LOC389332A0A1B0GUA5 103 aa8.47□□□□□ -1.05
LINC00339-213ENST00000642137 LGALS9CQ6DKI2 356 aa8.47□□□□□ -1.05
LINC00339-213ENST00000642137 Q8N8P6 123 aa8.47□□□□□ -1.05
LINC00339-213ENST00000642137 NXT2Q9NPJ8 142 aaKnown RBP8.47□□□□□ -1.05
LINC00339-213ENST00000642137 MRPS16Q9Y3D3 137 aaKnown RBP8.47□□□□□ -1.05
LINC00339-213ENST00000642137 TRBV25-1A0A075B6N4 114 aa8.46□□□□□ -1.06
LINC00339-213ENST00000642137 TRAV8-6A0A0B4J262 113 aa8.46□□□□□ -1.06
LINC00339-213ENST00000642137 K7EMI3 77 aa8.46□□□□□ -1.06
LINC00339-213ENST00000642137 IFI27P40305 119 aaPredicted RBP8.46□□□□□ -1.06
LINC00339-213ENST00000642137 IQCJQ1A5X6 159 aa8.46□□□□□ -1.06
LINC00339-213ENST00000642137 PRSS3P2Q8NHM4 247 aa8.46□□□□□ -1.06
LINC00339-213ENST00000642137 C18orf32Q8TCD1 76 aa8.46□□□□□ -1.06
LINC00339-213ENST00000642137 UPK3BQ9BT76 320 aa8.46□□□□□ -1.06
LINC00339-213ENST00000642137 IGHV1-24A0A0C4DH33 117 aa8.45□□□□□ -1.06
LINC00339-213ENST00000642137 TSHBP01222 138 aa8.45□□□□□ -1.06
LINC00339-213ENST00000642137 UBE2DNLQ8IWF7 75 aa8.45□□□□□ -1.06
LINC00339-213ENST00000642137 STARD9Q9P2P6 4700 aa8.45□□□□□ -1.06
LINC00339-213ENST00000642137 LINC01546A6NGU7 62 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms