RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 Q6ZRM9 215 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 ZNF747Q9BV97 191 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 CHD9Q3L8U1 2897 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 C1orf167Q5SNV9 1468 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 LINC01555Q8NAE3 123 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 IGHV6-1A0A0B4J1U7 121 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 SDHAF1A6NFY7 115 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 ATP11AUNQ6ZP68 121 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 MSRB1Q9NZV6 116 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 IGKV6D-41A0A0C4DH26 115 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 ZNF525Q8N782 197 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 IGKV1-9A0A0C4DH69 117 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 C1orf134Q5TEV5 83 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 PSMG3-AS1Q96PY0 264 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 KRTAP16-1A8MUX0 517 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 CRYBA2P53672 197 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 A0A0G2JMZ2 1700 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 LRRC37A2A6NM11 1700 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 LRRC37AA6NMS7 1700 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 FSHBP01225 129 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 B3GALT5-AS1P59052 145 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 ZNF689Q96CS4 500 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-221ENST00000641996 V9GYV3 84 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 SMIM27A0A1W2PRY6 76 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 H7C423 109 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 IL9P15248 144 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 ZNF580Q9UK33 172 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 NUP153P49790 1475 aaKnown RBP2.67□□□□□ -1.98
SCN1A-221ENST00000641996 LINC01548A6NM66 108 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 IGHV1-46P01743 117 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 SBSPONQ8IVN8 264 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 RNASE6Q93091 150 aaKnown RBP2.67□□□□□ -1.98
SCN1A-221ENST00000641996 IGKV1D-42A0A075B6H8 117 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 C10orf113Q5VZT2 155 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 IGHV3-72A0A0B4J1Y9 119 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 CNEP1R1Q8N9A8 125 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 ZNRF1Q8ND25 227 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 WDR90Q96KV7 1748 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 NFAT5O94916 1531 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-221ENST00000641996 POM121L12Q8N7R1 296 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 SND1-IT1Q9HBX3 110 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-221ENST00000641996 IGKV1-12A0A0C4DH73 117 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 IGKV1D-12P01611 117 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 LTBP2Q14767 1821 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 DEFB104AQ8WTQ1 72 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 THSD7BQ9C0I4 1608 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 BPESC1Q9GZL8 116 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 RICTORQ6R327 1708 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 FOXS1O43638 330 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 DEFB112Q30KQ8 113 aa2.67□□□□□ -1.98
SCN1A-221ENST00000641996 NWD1Q149M9 1564 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 LYZP61626 148 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 Q6P435 159 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 GAFA1Q96PS6 74 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 IGSF10Q6WRI0 2623 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 IGHV3-49A0A0A0MS15 119 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 IGKV1-8A0A0C4DH67 115 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 IGKV1-16P04430 117 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 LINC01465Q8N7H1 131 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 DHRS4-AS1Q9P1J3 65 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 SMCPP49901 116 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-221ENST00000641996 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 HIVEP1P15822 2718 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 TRBV7-3A0A075B6L6 115 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 ARMS2P0C7Q2 107 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 RNASE3P12724 160 aaKnown RBP2.66□□□□□ -1.98
SCN1A-221ENST00000641996 C16orf97H3BN30 126 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 HMGN4O00479 90 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 NCR3O14931 201 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 WT1P19544 449 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-221ENST00000641996 NREPQ16612 68 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 FP248Q71RG6 208 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-221ENST00000641996 CTSZQ9UBR2 303 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 R4GMQ9 66 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 IGKV3D-20A0A0C4DH25 116 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 LIMD2Q9BT23 127 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 LINC00588Q9Y4M8 146 aa2.66□□□□□ -1.98
SCN1A-221ENST00000641996 ZNF831Q5JPB2 1677 aa2.65□□□□□ -1.98
SCN1A-221ENST00000641996 C3orf84H3BNL1 204 aa2.65□□□□□ -1.98
SCN1A-221ENST00000641996 CHCHD10Q8WYQ3 142 aaPredicted RBP2.65□□□□□ -1.98
SCN1A-221ENST00000641996 IGKV1D-17A0A075B6S4 117 aa2.65□□□□□ -1.98
SCN1A-221ENST00000641996 FOLR3P41439 243 aa2.65□□□□□ -1.98
SCN1A-221ENST00000641996 CYSTM1Q9H1C7 97 aa2.65□□□□□ -1.98
SCN1A-221ENST00000641996 MINOS1-NBL1R4GNA1 71 aa2.65□□□□□ -1.98
SCN1A-221ENST00000641996 PXDNQ92626 1479 aa2.65□□□□□ -1.99
SCN1A-221ENST00000641996 CRIP2P52943 208 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-221ENST00000641996 DIRC1Q969H9 104 aa2.65□□□□□ -1.99
SCN1A-221ENST00000641996 CCL28Q9NRJ3 127 aa2.65□□□□□ -1.99
SCN1A-221ENST00000641996 K7ENP7 123 aa2.65□□□□□ -1.99
SCN1A-221ENST00000641996 ERHP84090 104 aaKnown RBP2.65□□□□□ -1.99
SCN1A-221ENST00000641996 SMIM14Q96QK8 99 aa2.65□□□□□ -1.99
SCN1A-221ENST00000641996 COL24A1Q17RW2 1714 aa2.65□□□□□ -1.99
SCN1A-221ENST00000641996 IGLV5-45A0A087WSX0 123 aa2.65□□□□□ -1.99
SCN1A-221ENST00000641996 PIN1P1O15428 100 aa2.65□□□□□ -1.99
SCN1A-221ENST00000641996 EIF4EBP3O60516 100 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-221ENST00000641996 C16orf47Q6ZP98 133 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-221ENST00000641996 TMEM254Q8TBM7 123 aa2.65□□□□□ -1.99
SCN1A-221ENST00000641996 TRAV22A0A0B4J277 110 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 198.8 ms