RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 OR4C5Q8NGB2 326 aa13.15□□□□□ -0.3
CLN3-254ENST00000637050 HIST1H2BLQ99880 126 aa13.15□□□□□ -0.3
CLN3-254ENST00000637050 NACAE9PAV3 2078 aa13.15□□□□□ -0.3
CLN3-254ENST00000637050 IGHV4-28A0A0C4DH34 117 aa13.15□□□□□ -0.31
CLN3-254ENST00000637050 GAGE12BA1L429 117 aa13.15□□□□□ -0.31
CLN3-254ENST00000637050 GAGE7O76087 117 aa13.15□□□□□ -0.31
CLN3-254ENST00000637050 GAGE12FP0CL80 117 aa13.15□□□□□ -0.31
CLN3-254ENST00000637050 GAGE12GP0CL81 117 aa13.15□□□□□ -0.31
CLN3-254ENST00000637050 GAGE12IP0CL82 117 aa13.15□□□□□ -0.31
CLN3-254ENST00000637050 C20orf78Q9BR46 151 aa13.15□□□□□ -0.31
CLN3-254ENST00000637050 M0R143 59 aa13.14□□□□□ -0.31
CLN3-254ENST00000637050 IGLV2-18A0A075B6J9 118 aa13.13□□□□□ -0.31
CLN3-254ENST00000637050 HSBP1O75506 76 aa13.13□□□□□ -0.31
CLN3-254ENST00000637050 SUMO2P61956 95 aaKnown RBP13.13□□□□□ -0.31
CLN3-254ENST00000637050 FA2HQ7L5A8 372 aa13.13□□□□□ -0.31
CLN3-254ENST00000637050 TMEM18Q96B42 140 aa13.13□□□□□ -0.31
CLN3-254ENST00000637050 ZNF479Q96JC4 524 aa13.13□□□□□ -0.31
CLN3-254ENST00000637050 NXT2Q9NPJ8 142 aaKnown RBP13.13□□□□□ -0.31
CLN3-254ENST00000637050 DNAH3Q8TD57 4116 aa13.13□□□□□ -0.31
CLN3-254ENST00000637050 TRGV2A0A075B6R0 118 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 TRBV6-5A0A0K0K1A5 114 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 LINC01546A6NGU7 62 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 H7C1H1 209 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 IGHV3-53P01767 116 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 FABP4P15090 132 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 Q6ZSN1 163 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 Q8N8P6 123 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 C18orf15Q96N68 181 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 AP5S1Q9NUS5 200 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 LYRM9A8MSI8 78 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 DLEU1O43261 78 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 CIDEAO60543 219 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 PMCHP20382 165 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 JOSD1Q15040 202 aaPredicted RBP13.12□□□□□ -0.31
CLN3-254ENST00000637050 PACRGQ96M98 296 aaPredicted RBP13.12□□□□□ -0.31
CLN3-254ENST00000637050 SMIM2Q9BVW6 85 aa13.12□□□□□ -0.31
CLN3-254ENST00000637050 RPL32P62910 135 aaKnown RBP13.11□□□□□ -0.31
CLN3-254ENST00000637050 FAM19A2Q8N3H0 131 aa13.11□□□□□ -0.31
CLN3-254ENST00000637050 SVIPQ8NHG7 77 aa13.11□□□□□ -0.31
CLN3-254ENST00000637050 ST20Q9HBF5 79 aa13.11□□□□□ -0.31
CLN3-254ENST00000637050 DEFB4AO15263 64 aa13.1□□□□□ -0.31
CLN3-254ENST00000637050 AMTP48728 403 aa13.1□□□□□ -0.31
CLN3-254ENST00000637050 FAM222AQ5U5X8 452 aa13.1□□□□□ -0.31
CLN3-254ENST00000637050 PRO1933Q9H354 126 aa13.1□□□□□ -0.31
CLN3-254ENST00000637050 RETNQ9HD89 108 aa13.1□□□□□ -0.31
CLN3-254ENST00000637050 DKK2Q9UBU2 259 aa13.1□□□□□ -0.31
CLN3-254ENST00000637050 ZNF25P17030 456 aaPredicted RBP13.09□□□□□ -0.31
CLN3-254ENST00000637050 POLR2KP53803 58 aaKnown RBP13.09□□□□□ -0.31
CLN3-254ENST00000637050 IGHV1-24A0A0C4DH33 117 aa13.08□□□□□ -0.31
CLN3-254ENST00000637050 DEFB130BP0DP73 79 aa13.08□□□□□ -0.31
CLN3-254ENST00000637050 DEFB130AP0DP74 79 aa13.08□□□□□ -0.31
CLN3-254ENST00000637050 SBSPONQ8IVN8 264 aa13.08□□□□□ -0.31
CLN3-254ENST00000637050 TMEM70Q9BUB7 260 aa13.08□□□□□ -0.31
CLN3-254ENST00000637050 P0DMU3 169 aa13.08□□□□□ -0.32
CLN3-254ENST00000637050 FAM231AP0DMU4 169 aa13.08□□□□□ -0.32
CLN3-254ENST00000637050 FAM231CP0DMU5 169 aa13.08□□□□□ -0.32
CLN3-254ENST00000637050 G0S2P27469 103 aa13.08□□□□□ -0.32
CLN3-254ENST00000637050 PMCHL1Q16048 86 aa13.08□□□□□ -0.32
CLN3-254ENST00000637050 NBEAL2Q6ZNJ1 2754 aa13.07□□□□□ -0.32
CLN3-254ENST00000637050 SDHAF1A6NFY7 115 aa13.07□□□□□ -0.32
CLN3-254ENST00000637050 DEFB121Q5J5C9 76 aa13.07□□□□□ -0.32
CLN3-254ENST00000637050 NOTCH1P46531 2555 aa13.07□□□□□ -0.32
CLN3-254ENST00000637050 Q9UF83 564 aa13.06□□□□□ -0.32
CLN3-254ENST00000637050 MGAM2Q2M2H8 2515 aa13.06□□□□□ -0.32
CLN3-254ENST00000637050 TRBV27A0A0K0K1C4 114 aa13.05□□□□□ -0.32
CLN3-254ENST00000637050 VCYO14598 125 aa13.05□□□□□ -0.32
CLN3-254ENST00000637050 CDPF1Q6NVV7 123 aa13.05□□□□□ -0.32
CLN3-254ENST00000637050 NEXN-AS1Q8NBZ9 246 aa13.05□□□□□ -0.32
CLN3-254ENST00000637050 DNAJC30Q96LL9 226 aa13.05□□□□□ -0.32
CLN3-254ENST00000637050 NBEAL1Q6ZS30 2694 aa13.05□□□□□ -0.32
CLN3-254ENST00000637050 A0A096LNJ9 63 aa13.05□□□□□ -0.32
CLN3-254ENST00000637050 K7EMI3 77 aa13.05□□□□□ -0.32
CLN3-254ENST00000637050 SPART-AS1P0CW21 52 aa13.05□□□□□ -0.32
CLN3-254ENST00000637050 FHL2Q14192 279 aa13.05□□□□□ -0.32
CLN3-254ENST00000637050 SLC25A29Q8N8R3 303 aa13.05□□□□□ -0.32
CLN3-254ENST00000637050 CELA1Q9UNI1 258 aa13.05□□□□□ -0.32
CLN3-254ENST00000637050 K7EQD1 137 aa13.04□□□□□ -0.32
CLN3-254ENST00000637050 LAGE3Q14657 143 aa13.04□□□□□ -0.32
CLN3-254ENST00000637050 TNFRSF18Q9Y5U5 241 aa13.04□□□□□ -0.32
CLN3-254ENST00000637050 TRGV4A0A0C4DH28 118 aa13.03□□□□□ -0.32
CLN3-254ENST00000637050 TRBV10-1A0A0K0K1A3 114 aa13.03□□□□□ -0.32
CLN3-254ENST00000637050 TRBV6-4A0A1B0GX49 114 aa13.03□□□□□ -0.32
CLN3-254ENST00000637050 NEGR1Q7Z3B1 354 aa13.03□□□□□ -0.32
CLN3-254ENST00000637050 TM2D3Q9BRN9 247 aa13.03□□□□□ -0.32
CLN3-254ENST00000637050 C11orf68Q9H3H3 251 aaKnown RBP13.03□□□□□ -0.32
CLN3-254ENST00000637050 TEX48A0A1B0GUV7 120 aa13.02□□□□□ -0.32
CLN3-254ENST00000637050 DAD1P61803 113 aa13.02□□□□□ -0.32
CLN3-254ENST00000637050 SPATA25Q9BR10 227 aa13.02□□□□□ -0.32
CLN3-254ENST00000637050 EREGO14944 169 aa13.02□□□□□ -0.33
CLN3-254ENST00000637050 HBDP02042 147 aa13.02□□□□□ -0.33
CLN3-254ENST00000637050 FCER1GP30273 86 aa13.02□□□□□ -0.33
CLN3-254ENST00000637050 KIR2DL4Q99706 377 aa13.02□□□□□ -0.33
CLN3-254ENST00000637050 ORMDL2Q53FV1 153 aa13.01□□□□□ -0.33
CLN3-254ENST00000637050 ZNF664Q8N3J9 261 aa13.01□□□□□ -0.33
CLN3-254ENST00000637050 I3L3M4 83 aa13□□□□□ -0.33
CLN3-254ENST00000637050 LEPROTL1O95214 131 aa13□□□□□ -0.33
CLN3-254ENST00000637050 MRAPQ8TCY5 172 aa13□□□□□ -0.33
CLN3-254ENST00000637050 SNHG12Q9BXW3 62 aa13□□□□□ -0.33
CLN3-254ENST00000637050 TRBV7-3A0A075B6L6 115 aa12.99□□□□□ -0.33
CLN3-254ENST00000637050 RPL36AP83881 106 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms