RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 C20orf197Q8N268 126 aa5.15□□□□□ -1.59
SCN1A-213ENST00000636759 FHL2Q14192 279 aa5.15□□□□□ -1.59
SCN1A-213ENST00000636759 FAM223AQ8IWN6 122 aa5.15□□□□□ -1.59
SCN1A-213ENST00000636759 A0A087WVE0 104 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 ADARB2-AS1A8MUL3 147 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 CNEP1R1Q8N9A8 125 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 PSMG3-AS1Q96PY0 264 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 TIMM17AQ99595 171 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 NCOR1O75376 2440 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 GHRHP01286 108 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 CIRBPQ14011 172 aaKnown RBP5.14□□□□□ -1.59
SCN1A-213ENST00000636759 ZNF876PQ49A33 203 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 Q6JHZ5 121 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 CCL13Q99616 98 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 PHLDA3Q9Y5J5 127 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 AKAP13Q12802 2813 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 TACC2O95359 2948 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 A0A0J9YX75 114 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 C9orf139Q6ZV77 190 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 LINC01561Q8N1V8 128 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 DEFB104AQ8WTQ1 72 aa5.14□□□□□ -1.59
SCN1A-213ENST00000636759 ADGRG4Q8IZF6 3080 aa5.13□□□□□ -1.59
SCN1A-213ENST00000636759 A0A1W2PRX2 142 aa5.13□□□□□ -1.59
SCN1A-213ENST00000636759 TMEM178BH3BS89 294 aa5.13□□□□□ -1.59
SCN1A-213ENST00000636759 IGLV2-23P01705 113 aa5.13□□□□□ -1.59
SCN1A-213ENST00000636759 TMEM61Q8N0U2 210 aa5.13□□□□□ -1.59
SCN1A-213ENST00000636759 I3L2K1 104 aa5.13□□□□□ -1.59
SCN1A-213ENST00000636759 COX7A2LO14548 114 aa5.13□□□□□ -1.59
SCN1A-213ENST00000636759 RPL39P62891 51 aaKnown RBP5.13□□□□□ -1.59
SCN1A-213ENST00000636759 IGIPA6NJ69 53 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 SPRY3O43610 288 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 C6orf226Q5I0X4 101 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 Q6ZSV7 163 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 CUL9Q8IWT3 2517 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 IGLV3-9A0A075B6K5 115 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 IGHV7-4-1A0A0J9YVY3 117 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 FAM223BA6NKX1 122 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 TSHBP01222 138 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 LOXP28300 417 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-213ENST00000636759 RBM3P98179 157 aaKnown RBP5.12□□□□□ -1.59
SCN1A-213ENST00000636759 S4R3C0 116 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 IGHV4-4A0A075B6R2 117 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 VCYO14598 125 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 MIAQ16674 131 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 RNF7Q9UBF6 113 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 NDUFA12Q9UI09 145 aa5.12□□□□□ -1.59
SCN1A-213ENST00000636759 HRNRQ86YZ3 2850 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-213ENST00000636759 F5H697 171 aa5.11□□□□□ -1.59
SCN1A-213ENST00000636759 C22orf34Q6ZV56 151 aa5.11□□□□□ -1.59
SCN1A-213ENST00000636759 Q8NA96 180 aa5.11□□□□□ -1.59
SCN1A-213ENST00000636759 IL17DQ8TAD2 202 aa5.11□□□□□ -1.59
SCN1A-213ENST00000636759 C11orf21Q9P2W6 132 aa5.11□□□□□ -1.59
SCN1A-213ENST00000636759 NBR2O15453 112 aa5.11□□□□□ -1.59
SCN1A-213ENST00000636759 MRPS36P82909 103 aaKnown RBP5.11□□□□□ -1.59
SCN1A-213ENST00000636759 ZNF575Q86XF7 245 aa5.11□□□□□ -1.59
SCN1A-213ENST00000636759 FANCD2OSQ96PS1 177 aa5.11□□□□□ -1.59
SCN1A-213ENST00000636759 CCL3L1P16619 93 aa5.11□□□□□ -1.59
SCN1A-213ENST00000636759 FAM222AQ5U5X8 452 aa5.11□□□□□ -1.59
SCN1A-213ENST00000636759 VSIG2Q96IQ7 327 aa5.11□□□□□ -1.59
SCN1A-213ENST00000636759 GAFA1Q96PS6 74 aa5.11□□□□□ -1.59
SCN1A-213ENST00000636759 A0A0U1RRA0 63 aa5.1□□□□□ -1.59
SCN1A-213ENST00000636759 IGHV3-30-3P0DP02 117 aa5.1□□□□□ -1.59
SCN1A-213ENST00000636759 XCL1P47992 114 aa5.1□□□□□ -1.59
SCN1A-213ENST00000636759 CDSNQ15517 529 aa5.1□□□□□ -1.59
SCN1A-213ENST00000636759 XCL2Q9UBD3 114 aa5.1□□□□□ -1.59
SCN1A-213ENST00000636759 MGAQ8IWI9 3026 aa5.1□□□□□ -1.59
SCN1A-213ENST00000636759 PIEZO2Q9H5I5 2752 aa5.1□□□□□ -1.59
SCN1A-213ENST00000636759 PRAC2D3DTV9 90 aa5.1□□□□□ -1.59
SCN1A-213ENST00000636759 K7EIM0 57 aa5.1□□□□□ -1.59
SCN1A-213ENST00000636759 CCL21O00585 134 aa5.1□□□□□ -1.59
SCN1A-213ENST00000636759 BUB3O43684 328 aa5.1□□□□□ -1.59
SCN1A-213ENST00000636759 RETNQ9HD89 108 aa5.1□□□□□ -1.59
SCN1A-213ENST00000636759 A0A0J9YXV3 536 aa5.1□□□□□ -1.59
SCN1A-213ENST00000636759 TRAV23DV6A0A075B6W5 121 aa5.09□□□□□ -1.59
SCN1A-213ENST00000636759 S100A7L2Q5SY68 101 aa5.09□□□□□ -1.59
SCN1A-213ENST00000636759 LRBAP50851 2863 aa5.09□□□□□ -1.59
SCN1A-213ENST00000636759 IGHV3OR16-10A0A075B7F0 116 aa5.09□□□□□ -1.59
SCN1A-213ENST00000636759 TEX22C9J3V5 150 aa5.09□□□□□ -1.59
SCN1A-213ENST00000636759 NXPH4O95158 308 aa5.09□□□□□ -1.59
SCN1A-213ENST00000636759 NDPQ00604 133 aa5.09□□□□□ -1.59
SCN1A-213ENST00000636759 PMAIP1Q13794 54 aa5.09□□□□□ -1.59
SCN1A-213ENST00000636759 GFRALQ6UXV0 394 aa5.09□□□□□ -1.59
SCN1A-213ENST00000636759 WNK2Q9Y3S1 2297 aa5.09□□□□□ -1.59
SCN1A-213ENST00000636759 TIMM17BO60830 172 aa5.09□□□□□ -1.6
SCN1A-213ENST00000636759 ADAMTSL4-AS1Q5T5F5 129 aa5.09□□□□□ -1.6
SCN1A-213ENST00000636759 ICE1Q9Y2F5 2266 aa5.09□□□□□ -1.6
SCN1A-213ENST00000636759 M0R1B8 84 aa5.08□□□□□ -1.6
SCN1A-213ENST00000636759 IGHV1-69P01742 117 aa5.08□□□□□ -1.6
SCN1A-213ENST00000636759 C14orf132Q9NPU4 83 aa5.08□□□□□ -1.6
SCN1A-213ENST00000636759 UBE2D4Q9Y2X8 147 aa5.08□□□□□ -1.6
SCN1A-213ENST00000636759 OPRPNQ99935 248 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-213ENST00000636759 IGHV3OR16-8A0A075B7F1 116 aa5.08□□□□□ -1.6
SCN1A-213ENST00000636759 SOCS3O14543 225 aa5.08□□□□□ -1.6
SCN1A-213ENST00000636759 LINC00482Q8N8I6 264 aa5.08□□□□□ -1.6
SCN1A-213ENST00000636759 LINC00846Q9NV44 126 aa5.08□□□□□ -1.6
SCN1A-213ENST00000636759 ZNF580Q9UK33 172 aa5.08□□□□□ -1.6
SCN1A-213ENST00000636759 FP248Q71RG6 208 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-213ENST00000636759 LITAFQ99732 161 aa5.07□□□□□ -1.6
SCN1A-213ENST00000636759 CADP27708 2225 aa5.07□□□□□ -1.6
SCN1A-213ENST00000636759 EPM2AB3EWF7 344 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms