RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 RHODO00212 210 aa16.03■□□□□ 0.16
PNKP-220ENST00000627232 RHOHQ15669 191 aa16.03■□□□□ 0.16
PNKP-220ENST00000627232 HHLA3Q9XRX5 114 aa16.03■□□□□ 0.16
PNKP-220ENST00000627232 NEXN-AS1Q8NBZ9 246 aa16.02■□□□□ 0.15
PNKP-220ENST00000627232 FGF6P10767 208 aa16.01■□□□□ 0.15
PNKP-220ENST00000627232 PLNP26678 52 aa16.01■□□□□ 0.15
PNKP-220ENST00000627232 IL17DQ8TAD2 202 aa16.01■□□□□ 0.15
PNKP-220ENST00000627232 MRPL35Q9NZE8 188 aaKnown RBP16.01■□□□□ 0.15
PNKP-220ENST00000627232 F8VRH5 84 aa16■□□□□ 0.15
PNKP-220ENST00000627232 RS1O15537 224 aa16■□□□□ 0.15
PNKP-220ENST00000627232 DLEU1O43261 78 aa16■□□□□ 0.15
PNKP-220ENST00000627232 BATFQ16520 125 aa16■□□□□ 0.15
PNKP-220ENST00000627232 COL5A1-AS1Q5SY13 56 aa16■□□□□ 0.15
PNKP-220ENST00000627232 CFAP126Q5VTH2 177 aa16■□□□□ 0.15
PNKP-220ENST00000627232 NF1P21359 2839 aa16■□□□□ 0.15
PNKP-220ENST00000627232 I3L3M4 83 aa15.99■□□□□ 0.15
PNKP-220ENST00000627232 BOD1L2Q8IYS8 172 aa15.99■□□□□ 0.15
PNKP-220ENST00000627232 BAALCQ8WXS3 180 aa15.99■□□□□ 0.15
PNKP-220ENST00000627232 TMEM141Q96I45 108 aa15.99■□□□□ 0.15
PNKP-220ENST00000627232 NACAE9PAV3 2078 aa15.99■□□□□ 0.15
PNKP-220ENST00000627232 AZU1P20160 251 aa15.99■□□□□ 0.15
PNKP-220ENST00000627232 C1QTNF4Q9BXJ3 329 aa15.99■□□□□ 0.15
PNKP-220ENST00000627232 TP73-AS1Q9UF72 201 aa15.99■□□□□ 0.15
PNKP-220ENST00000627232 TP53TG1Q9Y2A0 90 aa15.99■□□□□ 0.15
PNKP-220ENST00000627232 TIMM17AQ99595 171 aa15.98■□□□□ 0.15
PNKP-220ENST00000627232 MRPL16Q9NX20 251 aaKnown RBP15.98■□□□□ 0.15
PNKP-220ENST00000627232 CHTOPQ9Y3Y2 248 aaKnown RBP15.98■□□□□ 0.15
PNKP-220ENST00000627232 IGIPA6NJ69 53 aa15.97■□□□□ 0.15
PNKP-220ENST00000627232 TSHBP01222 138 aa15.97■□□□□ 0.15
PNKP-220ENST00000627232 GIG44P09565 113 aaPredicted RBP15.97■□□□□ 0.15
PNKP-220ENST00000627232 HINT1P49773 126 aaPredicted RBP15.97■□□□□ 0.15
PNKP-220ENST00000627232 RNASE8Q8TDE3 154 aaKnown RBP15.97■□□□□ 0.15
PNKP-220ENST00000627232 TMEM263Q8WUH6 116 aaKnown RBP15.97■□□□□ 0.15
PNKP-220ENST00000627232 IGHV3OR16-12A0A075B7B8 117 aa15.96■□□□□ 0.15
PNKP-220ENST00000627232 SIVA1O15304 175 aa15.96■□□□□ 0.15
PNKP-220ENST00000627232 INSL3P51460 131 aa15.96■□□□□ 0.15
PNKP-220ENST00000627232 C2orf91Q6ZV80 131 aa15.96■□□□□ 0.15
PNKP-220ENST00000627232 IGHV3-73A0A0B4J1V6 119 aa15.95■□□□□ 0.14
PNKP-220ENST00000627232 IGHV3-53P01767 116 aa15.95■□□□□ 0.14
PNKP-220ENST00000627232 ZC2HC1BQ5TFG8 222 aa15.95■□□□□ 0.14
PNKP-220ENST00000627232 WFDC10AQ9H1F0 79 aa15.95■□□□□ 0.14
PNKP-220ENST00000627232 C12orf54Q6X4T0 127 aa15.94■□□□□ 0.14
PNKP-220ENST00000627232 DNAJC30Q96LL9 226 aa15.94■□□□□ 0.14
PNKP-220ENST00000627232 RPL35AP18077 110 aaKnown RBP15.94■□□□□ 0.14
PNKP-220ENST00000627232 NMUP48645 174 aa15.94■□□□□ 0.14
PNKP-220ENST00000627232 TNFRSF18Q9Y5U5 241 aa15.94■□□□□ 0.14
PNKP-220ENST00000627232 PRSS29PA6NIE9 313 aa15.93■□□□□ 0.14
PNKP-220ENST00000627232 RPL39P62891 51 aaKnown RBP15.93■□□□□ 0.14
PNKP-220ENST00000627232 C9orf66Q5T8R8 295 aa15.93■□□□□ 0.14
PNKP-220ENST00000627232 CUBNO60494 3623 aa15.93■□□□□ 0.14
PNKP-220ENST00000627232 OTOGQ6ZRI0 2925 aa15.92■□□□□ 0.14
PNKP-220ENST00000627232 P0DMU3 169 aa15.92■□□□□ 0.14
PNKP-220ENST00000627232 FAM231AP0DMU4 169 aa15.92■□□□□ 0.14
PNKP-220ENST00000627232 FAM231CP0DMU5 169 aa15.92■□□□□ 0.14
PNKP-220ENST00000627232 PMVKQ15126 192 aa15.92■□□□□ 0.14
PNKP-220ENST00000627232 C20orf203Q8NBC4 194 aa15.92■□□□□ 0.14
PNKP-220ENST00000627232 MPV17L2Q567V2 206 aa15.91■□□□□ 0.14
PNKP-220ENST00000627232 Q6ZSN1 163 aa15.91■□□□□ 0.14
PNKP-220ENST00000627232 GTSCR1Q86UQ5 136 aa15.91■□□□□ 0.14
PNKP-220ENST00000627232 CSNK1G2-AS1Q8NCQ2 148 aa15.91■□□□□ 0.14
PNKP-220ENST00000627232 C16orf74Q96GX8 76 aa15.91■□□□□ 0.14
PNKP-220ENST00000627232 DAZ2Q13117 558 aaKnown RBP15.9■□□□□ 0.14
PNKP-220ENST00000627232 PAPPA-AS1Q5QFB9 102 aa15.9■□□□□ 0.14
PNKP-220ENST00000627232 PCP2Q8IVA1 136 aa15.9■□□□□ 0.14
PNKP-220ENST00000627232 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.9■□□□□ 0.14
PNKP-220ENST00000627232 CITED1Q99966 193 aa15.9■□□□□ 0.14
PNKP-220ENST00000627232 SETXQ7Z333 2677 aaKnown RBP15.9■□□□□ 0.14
PNKP-220ENST00000627232 IGKV2D-26A0A0A0MRZ7 120 aa15.89■□□□□ 0.13
PNKP-220ENST00000627232 TRGV1A0A0A0MS02 117 aa15.89■□□□□ 0.13
PNKP-220ENST00000627232 TCTAP57738 103 aa15.89■□□□□ 0.13
PNKP-220ENST00000627232 BVES-AS1Q5T3Y7 98 aa15.89■□□□□ 0.13
PNKP-220ENST00000627232 DEFB104AQ8WTQ1 72 aa15.89■□□□□ 0.13
PNKP-220ENST00000627232 OR4C5Q8NGB2 326 aa15.89■□□□□ 0.13
PNKP-220ENST00000627232 TMEM97Q5BJF2 176 aa15.88■□□□□ 0.13
PNKP-220ENST00000627232 CST9LQ9H4G1 147 aa15.88■□□□□ 0.13
PNKP-220ENST00000627232 FN1P02751 2386 aaKnown RBP15.88■□□□□ 0.13
PNKP-220ENST00000627232 TRAV4A0A0B4J268 109 aa15.87■□□□□ 0.13
PNKP-220ENST00000627232 HIGD1BQ9P298 99 aa15.87■□□□□ 0.13
PNKP-220ENST00000627232 RRN3P1Q2M238 152 aa15.85■□□□□ 0.13
PNKP-220ENST00000627232 OVOL2Q9BRP0 275 aa15.85■□□□□ 0.13
PNKP-220ENST00000627232 PYGO1Q9Y3Y4 419 aa15.85■□□□□ 0.13
PNKP-220ENST00000627232 NOTCH2Q04721 2471 aa15.85■□□□□ 0.13
PNKP-220ENST00000627232 IGLV4-69A0A075B6H9 119 aa15.84■□□□□ 0.13
PNKP-220ENST00000627232 PLAC8L1A1L4L8 177 aa15.84■□□□□ 0.13
PNKP-220ENST00000627232 CIDEAO60543 219 aa15.84■□□□□ 0.13
PNKP-220ENST00000627232 NPSP0C0P6 89 aa15.84■□□□□ 0.13
PNKP-220ENST00000627232 Q6ZTI0 123 aa15.84■□□□□ 0.13
PNKP-220ENST00000627232 SETD2Q9BYW2 2564 aaPredicted RBP15.84■□□□□ 0.13
PNKP-220ENST00000627232 HSD52Q0P140 79 aa15.84■□□□□ 0.13
PNKP-220ENST00000627232 NOP10Q9NPE3 64 aaKnown RBP15.84■□□□□ 0.13
PNKP-220ENST00000627232 NSD1Q96L73 2696 aaPredicted RBP15.83■□□□□ 0.12
PNKP-220ENST00000627232 TRBV10-1A0A0K0K1A3 114 aa15.82■□□□□ 0.12
PNKP-220ENST00000627232 CRYBA4P53673 196 aa15.82■□□□□ 0.12
PNKP-220ENST00000627232 ZNF479Q96JC4 524 aa15.82■□□□□ 0.12
PNKP-220ENST00000627232 Q9UF83 564 aa15.82■□□□□ 0.12
PNKP-220ENST00000627232 C2CD3Q4AC94 2353 aa15.81■□□□□ 0.12
PNKP-220ENST00000627232 E9PLD3 99 aa15.81■□□□□ 0.12
PNKP-220ENST00000627232 SEC11AP67812 179 aa15.81■□□□□ 0.12
PNKP-220ENST00000627232 IGLV4-3A0A075B6K6 122 aa15.8■□□□□ 0.12
PNKP-220ENST00000627232 C11orf86A6NJI1 115 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms